| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF044G22 | Sequence | 643 | 002751 (7) | emb|CDP03254.1| | 6e-121 | unnamed protein product [Coffea canephora] | 581 | 002751 (7) | gb|KHN16645.1| | 5e-55 | Putative oxidoreductase ykwC [Glycine soja] |
| JMSF002J06 | Sequence | 351 | 013207 (2) | ref|XP_011095280.1| | 1e-23 | PREDICTED: calcium-binding protein PBP1 [Sesamum indicum] | 737 | 002751 (7) | ref|XP_011093637.1| | 2e-69 | PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial [S |
| JMSF022L19 | Sequence | 694 | 002751 (7) | ref|XP_004230209.1| | 3e-120 | PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial [S | 714 | 002751 (7) | emb|CDP03254.1| | 2e-82 | unnamed protein product [Coffea canephora] |
| JMSF052H22 | Sequence | 664 | 002751 (7) | ref|XP_004230209.1| | 5e-108 | PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial [S | 835 | 002751 (7) | emb|CDP03254.1| | 1e-114 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF052H22- GATGAGACTCTTATCGCTCTTCCGTTCACTCCACCTCTCCAACAGCAAAG
JMSF022L19- GTTCACTCCACCTCTCCAACAGCAAAG
____________________________________________________________
consensus GATGAGACTCTTATCGCTCTTCCGTTCACTCCACCTCTCCAACAGCAAAG
. : . : . : . : . : . :
JMSF052H22- CTCACAGTGTCTCAACCCGCTTCGCCGCCCGTATCCGCTCCATGGCCACCGCTACCGATG
JMSF022L19- CTCACAGTGTCTCAACCCGCTTCGCCGCCCGTATCCGCTCCATGGCCACCGCTACCGATG
JMFF044G22- ATGGCCACCGCTACCGATG
____________________________________________________________
consensus CTCACAGTGTCTCAACCCGCTTCGCCGCCCGTATCCGCTCCATGGCCACCGCTACCGATG
. : . : . : . : . : . :
JMSF052H22- CCGTGAATCCGTCAAACACCCGTCTGGGATGGATTGGTACCGGCGTGATGGGCCGATCAA
JMSF022L19- CCGTGAATCCGTCAAACACCCGTCTGGGATGGATTGGTACCGGCGTGATGGGCCGATCAA
JMFF044G22- CCGTGAATCCGTCAAACACCCGTCTGGGATGGATTGGTACCGGCGTGATGGGCCGATCAA
____________________________________________________________
consensus CCGTGAATCCGTCAAACACCCGTCTGGGATGGATTGGTACCGGCGTGATGGGCCGATCAA
. : . : . : . : . : . :
JMSF052H22- TGTGTGCCCACTTGATCAAGGCGGGATATAAGCTCACCGTCTTCACCAGGACTCCGAGCA
JMSF022L19- TGTGTGCCCACTTGATCAAGGCGGGATATAAGCTCACCATCTTCACCAGGACTCCGAGCA
JMFF044G22- TGTGTGCCCACTTGATCAAGGCGGGATATAAGCTCACCGTCTTCACCAGGACTCCGAGCA
____________________________________________________________
consensus TGTGTGCCCACTTGATCAAGGCGGGATATAAGCTCACCGTCTTCACCAGGACTCCGAGCA
. : . : . : . : . : . :
JMSF052H22- AAGCCCAAGAGCTCATTTCCATGGGGGCGCAGTGGGCTGACACTCCGAAATCCGTCTCTG
JMSF022L19- AAGCCCAAGAGCTCATTTCCATGGGGGCGCAGTGGGCTGACACTCCGAAATCCGTCTCTG
JMFF044G22- AAGCCCAAGAGCTCATTTCCATGGGGGCGCAGTGGGCTGACACTCCGAAATCCGTCTCTG
____________________________________________________________
consensus AAGCCCAAGAGCTCATTTCCATGGGGGCGCAGTGGGCTGACACTCCGAAATCCGTCTCTG
. : . : . : . : . : . :
JMSF052H22- CCCAATCGGACGTTGTATTCTCCATCGTCGGCTACCCCTCCGACGTCCGCCACGTCATCC
JMSF022L19- CCCAATCGGACGTTGTATTCTCCATCGTCGGCTACCCCTCCGACGTCCGCCACGTCATCC
JMFF044G22- CCCAATCGGACGTTGTATTCTCCATCGTCGGCTACCCCTCCGACGTCCGCCACGTCATCC
____________________________________________________________
consensus CCCAATCGGACGTTGTATTCTCCATCGTCGGCTACCCCTCCGACGTCCGCCACGTCATCC
. : . : . : . : . : . :
JMSF052H22- TCGATCCCAACTCCGGCGCCCTCTCCGGCCTTCGTCAAGGCGGCGTCGTGGTCGACTTGA
JMSF022L19- TCGATCCCAACTCCGGCGCCCTCTCCGGCCTTCGTCAAGGCGGCGTCGTGGTCGACTTGA
JMFF044G22- TCGATCCCAACTCCGGCGCCCTCTCCGGCCTTCGTCAAGGCGGCGTCGTGGTCGACTTGA
rJMSF052H22+ CGGCGTCGTGGTCGACTTGA
____________________________________________________________
consensus TCGATCCCAACTCCGGCGCCCTCTCCGGCCTTCGTCAAGGCGGCGTCGTGGTCGACTTGA
. : . : . : . : . : . :
JMSF052H22- CCACCTCCGAGCCCTCCCTCGC-GGTTGAAATCTACTCCGCCGCGACGTCCGCCGGCTGC
JMSF022L19- CCACCTCCGAGCCCTCCCTCGC-GGTTGAAATCTACTCCGCCGCGACGTCCGCCGGCTGC
JMFF044G22- CCACCTCCGAGCCCTCCCTCGC-GGTTGAAATCTACTCCGCCGCGACGTCCGCCGGCTGC
rJMSF052H22+ CCACCTCCGAGCCCTCCCTCGCGGGTTGAAATCTACTCCGCCGCGACGTCCGCCGGCTGC
____________________________________________________________
consensus CCACCTCCGAGCCCTCCCTCGC-GGTTGAAATCTACTCCGCCGCGACGTCCGCCGGCTGC
. : . : . : . : . : . :
JMSF052H22- TCCGCGATAGATGCCCCCGTTTCGGGCGGCGATCGGGGAGCCCGCAACGCCGCACTTTCA
JMSF022L19- TCCGCGATAGATGCCCCCGTTTCGGGCGGCGATCGGGGAGCCCGCAACGCCGCACTTTCA
JMFF044G22- TCCGCGATAGATGCCCCCGTTTCGGGCGGCGATCGGGGAGCCCGCAACGCCGCACTTTCA
rJMSF052H22+ TCCGCGATAGATGCCCCCGTTTCGGGCGGCGATCGGGGAGCCCGCAACGCCGCACTTTCA
____________________________________________________________
consensus TCCGCGATAGATGCCCCCGTTTCGGGCGGCGATCGGGGAGCCCGCAACGCCGCACTTTCA
. : . : . : . : . : . :
JMSF052H22- ATCTTTGCCGGCGGCGACGAAACCCTTGTTCAGCGGCTCTCCCCCATCTTTGCCCTCATG
JMSF022L19- ATCTTTGCCGGCGGCGACGAAACCCTTGTTCAGCGGCTCTCCCCCATCTTTGCCCTCATG
JMFF044G22- ATCTTTGCCGGCGGCGACGAAACCCTTGTTCAGCGGCTCTCCCCCATCTTTGCCCTCATG
rJMSF052H22+ ATCTTTGCCGGCGGCGACGAAACCCTTGTTCAGCGGCTCTCCCCCATCTTTGCCCTCATG
rJMSF022L19+ TCATG
____________________________________________________________
consensus ATCTTTGCCGGCGGCGACGAAACCCTTGTTCAGCGGCTCTCCCCCATCTTTGCCCTCATG
. : . : . : . : . : . :
JMSF052H22- GGTAGAGTTTATTACATGGGTGCCCCTGGAAAAGGCCAATTCACAAAACTAGCTAATCAA
JMSF022L19- GGTAGAGTTTATTACATGGGTGCCCCTGGAAAAGGCCAATTCACAAAACTAGCTAATCAA
JMFF044G22- GGTAGAGTTTATTACATGGGTGCCCCTGGAAAAGGCCAATTCACAANACTAGCTAATCAA
rJMSF052H22+ GGTAGAGTTTATTACATGGGTGCCCCTGGAAAAGGCCAATTCACAAAACTAGCTAATCAA
rJMSF022L19+ GGTAGAGTTTATTACATGGGTGCCCCTGGAAAAGGCCAATTCACAAAACTAGCTAATCAA
rJMSF002J06+ CAAAACTAGCTAATCAA
____________________________________________________________
consensus GGTAGAGTTTATTACATGGGTGCCCCTGGAAAAGGCCAATTCACAAAACTAGCTAATCAA
. : . : . : . : . : . :
JMSF052H22- ATAACCATAGCTTCG
JMSF022L19- ATAACCATAGCTTCGGGTATGGTTGGGCTTTGTGAAGGCCTTATATATGCCCACAAAGCT
JMFF044G22- ATAACCATAGCTTCGGGTATGGTTGGGCTTTGTGAAGGCCTTATATATGCCCANCAAGCT
rJMSF052H22+ ATAACCATAGCTTCGGGTATGGTTGGGCTTTGTGAAGGCCTTATATATGCCCACAAAGCT
rJMSF022L19+ ATAACCATAGCTTCGGGTATGGTTGGGCTTTGTGAAGGCCTTATATATGCCCACAAAGCT
rJMFF044G22+ AAAGCT
rJMSF002J06+ ATANCCATAGCTTCGGGTATGGTTGGGCTTTGTGAAGGCCTTATATATGCCCACAAAGCT
____________________________________________________________
consensus ATAACCATAGCTTCGGGTATGGTTGGGCTTTGTGAAGGCCTTATATATGCCCACAAAGCT
. : . : . : . : . : . :
JMSF022L19- GGTTTGG
JMFF044G22- GGTTTGGACTTGGAATTATATCTC
rJMSF052H22+ GGTTTGGACTTGGAATTATATCTCAGTGCAATTTCAACTGGAGCCGCGGGCTCAAAATCA
rJMSF022L19+ GGTTTGGACTTGGAATTATATCTCAGTGCAATTTCAACTGGAGCCGCGGGCTCAAAATCA
rJMFF044G22+ GGTTTGGACTTGGAATTATATCTCAGTGCAATTTCAACTGGAGCCGCGGGCTCAAAATCA
rJMSF002J06+ GGTTTGGACTTGGAATTATATCTCAGTGCAATTTCAACTGGAGCCGCGGGCTCAAAATCA
____________________________________________________________
consensus GGTTTGGACTTGGAATTATATCTCAGTGCAATTTCAACTGGAGCCGCGGGCTCAAAATCA
. : . : . : . : . : . :
rJMSF052H22+ TTGGACTTGTATGGGAATAGAATACTGAGCAGAGATTTGGATCCTGGATTTTATGTGAAT
rJMSF022L19+ TTGGACTTGTATGGGAATAGAATACTGAGCAGAGATTTGGATCCTGGATTTTATGTGAAT
rJMFF044G22+ TTGGACTTGTATGGGAATAGAATACTGAGCAGAGATTTGGATCCTGGATTTTATGTGAAT
rJMSF002J06+ TTGGACTTGTATGGGAATAGAATACTGAGCAGAGATTTGGATCCTGGATTTTATGTGAAT
____________________________________________________________
consensus TTGGACTTGTATGGGAATAGAATACTGAGCAGAGATTTGGATCCTGGATTTTATGTGAAT
. : . : . : . : . : . :
rJMSF052H22+ CACTTTGTTAAGGATTTGGGTATCTGCTTAAAAGAATGCCAAAACATGGGTTTGTCATTG
rJMSF022L19+ CACTTTGTTAAGGATTTGGGTATCTGCTTAAAAGAATGCCAAAACATGGGTTTGTCATTG
rJMFF044G22+ CACTTTGTTAAGGATTTGGGTATCTGCTTAAAAGAATGCCAAAACATGGGTTTGTCATTG
rJMSF002J06+ CACTTTGTTAAGGATTTGGGTATCTGCTTAAAAGAATGCCAAAACATGGGTTTGTCATTG
____________________________________________________________
consensus CACTTTGTTAAGGATTTGGGTATCTGCTTAAAAGAATGCCAAAACATGGGTTTGTCATTG
. : . : . : . : . : . :
rJMSF052H22+ CCAGGATTGGCATTGGCTCAGCAGCTTTATCTATCACTTAAGGCTCATGGAGAGGGTGAT
rJMSF022L19+ CCAGGATTGGCATTGGCTCAGCAGCTTTATCTATCACTTAAGGCTCATGGAGAGGGTGAT
rJMFF044G22+ CCAGGATTGGCATTGGCTCAGCAGCTTTATCTATCACTTAAGGCTCATGGAGAGGGTGAT
rJMSF002J06+ CCAGGATTGGCATTGGCTCAGCAGCTTTATCTATCACTTAAGGCTCATGGAGAGGGTGAT
____________________________________________________________
consensus CCAGGATTGGCATTGGCTCAGCAGCTTTATCTATCACTTAAGGCTCATGGAGAGGGTGAT
. : . : . : . : . : . :
rJMSF052H22+ TTAGGTACCCAAGCTCTTGTTTTGGCACTGGAGAGGCTTAACAATGTATCACTGTCAAGT
rJMSF022L19+ TTAGGTACCCAAGCTCTTGTTTTGGCACTGGAGAGGCTTAACAATGTATCACTGTCAAGT
rJMFF044G22+ TTAGGTACCCAAGCTCTTGTTTTGGCACTGGAGAGGCTTAACAATGTATCACTGTCAAGT
rJMSF002J06+ TTAGGTACCCAAGCTCTTGTTTTGGCACTGGAGAGGCTTAACAATGTATCACTGTCAAGT
____________________________________________________________
consensus TTAGGTACCCAAGCTCTTGTTTTGGCACTGGAGAGGCTTAACAATGTATCACTGTCAAGT
. : . : . : . : . : . :
rJMSF052H22+ TCTTCAAAGGGAAAAGCTTAGATGGATGAAGAGTAATGCATGACTTGCCGATTCTAGTTC
rJMSF022L19+ TCTTCAAAGGGAAAAGCTTAGATGGATGAAGAGTAATGCATGACTTGCCGATTCTAGTTC
rJMFF044G22+ TCTTCAAAGGGAAAAGCTTAGATGGATGAAGAGTAATGCATGACTTGCCGATTCTAGTTC
rJMSF002J06+ TCTTCAAAGGGAAAAGCTTAGATGGATGAAGAGTAATGCATGACTTGCCGATTCTAGTTC
____________________________________________________________
consensus TCTTCAAAGGGAAAAGCTTAGATGGATGAAGAGTAATGCATGACTTGCCGATTCTAGTTC
. : . : . : . : . : . :
rJMSF052H22+ TTTGGGTATATGGCTCTGGGTGTAGTAAGATTTTGCGCTATGGAGTTTGGAAACTGCAGC
rJMSF022L19+ TTTGGGTATATGGCTCTGGGTGTAGTAAGATTTTGCGCTATGGAGTTTGGAAACTGCAGC
rJMFF044G22+ TTTGGGTATATGGCTCTGGGTGTAGTAAGATTTTGCGCTATGGAGTTTGGAAACTGCAGC
rJMSF002J06+ TTTGGGTATATGGCTCTGGGTGTAGTAAGATTTTGCGCTATGGAGTTTGGAAACTGCAGC
____________________________________________________________
consensus TTTGGGTATATGGCTCTGGGTGTAGTAAGATTTTGCGCTATGGAGTTTGGAAACTGCAGC
. : . : . : . : . : . :
rJMSF052H22+ AGTGGCACAGTGCTAGTAGAAATGCCTGATTATTTGTCTATTTAAATAAGATTGTTGGTT
rJMSF022L19+ AGTGGCACAGTGCTAGTAGAAATGCCTGATTATTTGTCTATTTAAATAAGATTGTTGGTT
rJMFF044G22+ AGTGGCACAGTGCTAGTAGAAATGCCTGATTATTTGTCTATTTAAATAAGATTGTTGGTT
rJMSF002J06+ AGTGGCACAGTGCTAGTAGAAATGCCTGATTATTTGTCTATTTAAATAAGATTGTTGGTT
____________________________________________________________
consensus AGTGGCACAGTGCTAGTAGAAATGCCTGATTATTTGTCTATTTAAATAAGATTGTTGGTT
. : . : . : . : . : . :
rJMSF052H22+ TCATTTTTCATTGAAACTCATAGCTAATGTATATT
rJMSF022L19+ TCATTTTTCATTGAAACTCATAGCTAATGTATATTTGCTATAAGAAACAATGGTAGAAGA
rJMFF044G22+ TCATTTTTCATTGAAACTCATAGCTAATGTATATTTGCTATAAGAAACAATGGTAGAAGA
rJMSF002J06+ TCATTTTTCATTGAAACTCATAGCTAATGTATATTTGCTATAAGAAACAATGGTAGAAGA
____________________________________________________________
consensus TCATTTTTCATTGAAACTCATAGCTAATGTATATTTGCTATAAGAAACAATGGTAGAAGA
. : . : . : . : . : . :
rJMSF022L19+ CGAATTAATGATTTAAAGTGTGAAACTCCTTTGGTAACT
rJMFF044G22+ CGAATTAATGATTTAAAGTGTGAAACTCCTTTGGT
rJMSF002J06+ CGAATTAATGATTTAAAGTGTGAAACTCCTTTGGTAACTTGAAAAGTGTTTATGGTGAGA
____________________________________________________________
consensus CGAATTAATGATTTAAAGTGTGAAACTCCTTTGGTAACTTGAAAAGTGTTTATGGTGAGA
. : . : . : . : . : . :
rJMSF002J06+ GAGGAGTCATTATAATCTAATACTATAGTACCATGGGGCTAGTGAGCAATCGTGTAAGTA
____________________________________________________________
consensus GAGGAGTCATTATAATCTAATACTATAGTACCATGGGGCTAGTGAGCAATCGTGTAAGTA