Contig 002725:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016I04Sequence604012117 (4)ref|XP_006340574.1|4e-94PREDICTED: chorismate synthase 1, chloroplastic-like [Solanum tuberosum]749002725 (4)ref|XP_006340574.1|6e-96PREDICTED: chorismate synthase 1, chloroplastic-like [Solanum tuberosum]
JMFF049F15Sequence621012117 (4)ref|XP_006340574.1|6e-98PREDICTED: chorismate synthase 1, chloroplastic-like [Solanum tuberosum]341002725 (4)
JMSF024C24Sequence612017833ref|XP_006340574.1|1e-64PREDICTED: chorismate synthase 1, chloroplastic-like [Solanum tuberosum]776002725 (4)ref|XP_006340574.1|2e-131PREDICTED: chorismate synthase 1, chloroplastic-like [Solanum tuberosum]
JMSF039P16Sequence671012117 (4)ref|XP_006340574.1|1e-66PREDICTED: chorismate synthase 1, chloroplastic-like [Solanum tuberosum]849002725 (4)ref|XP_006340574.1|3e-119PREDICTED: chorismate synthase 1, chloroplastic-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF024C24+                                                                     A
rJMSF039P16+                                           ATCAGATTNGAAAACCATATTNGCCGA
                      ____________________________________________________________
consensus                                              ATCAGATTNGAAAACCATATTNGCCGA
 
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rJMSF024C24+          TGCCCAGATCCTGAATACGCAGAAAAGATGATAGCTGCCA-TTGATGCTGTTCGTGTAAA
rJMSF039P16+          TGCCCAGATCCTGAATACGCAGAAAAGATGATAGCTGCCATTTGATGCTGTTCGTGTAAA
                      ____________________________________________________________
consensus             TGCCCAGATCCTGAATACGCAGAAAAGATGATAGCTGCCATTTGATGCTGTTCGTGTAAA
 
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rJMSF024C24+          GGGAGATTCTGTTGGTGGTGTAGTTACTTGCATCGTCAGGAATGCTCCACGGGGTCTTGG
rJMSF039P16+          GGGAGATTCTGTTGGTGGTGTAGTTACTTGCATCGTCAGGAATGCTCCACGGGGTCTTGG
                      ____________________________________________________________
consensus             GGGAGATTCTGTTGGTGGTGTAGTTACTTGCATCGTCAGGAATGCTCCACGGGGTCTTGG
 
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rJMSF024C24+          ATATCCCGTATTTGATAAACTTGAAGCTGAGCTTGCTAAAGCTTGCATGTCGTTACCTGC
rJMSF039P16+          ATATCCCGTATTTGATAAACTTGAAGCTGAGCTTGCTAAAGCTTGCATGTCGTTACCTGC
rJMFF016I04+                                GAAGCTGAGCTTGCTAAAGCTTGCATGTCGTTACCTGC
                      ____________________________________________________________
consensus             ATATCCCGTATTTGATAAACTTGAAGCTGAGCTTGCTAAAGCTTGCATGTCGTTACCTGC
 
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rJMSF024C24+          AACAAAAGGATTTGAGTTTGGCAGTGGGTTTGCAGGCACATTCATGACTGGTAGTGAACA
rJMSF039P16+          AACAAAAGGATTTGAGTTTGGCAGTGGGTTTGCAGGCACATTCATGACTGGTAGTGAACA
rJMFF016I04+          AACAAAAGGATTTGAGTTTGGCAGTGGGTTTGCAGGCACATTCATGACTGGTAGTGAACA
                      ____________________________________________________________
consensus             AACAAAAGGATTTGAGTTTGGCAGTGGGTTTGCAGGCACATTCATGACTGGTAGTGAACA
 
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rJMSF024C24+          CAATGATGAATTTTATATGGATGAACATGGTAAAATCAGGACAAGAACCAACCGATCTGG
rJMSF039P16+          CAATGATGAATTTTATATGGATGAACATGGTAAAATCAGGACAAGAACCAACCGATCTGG
rJMFF016I04+          CAATGATGAATTTTATATGGATGAACATGGTAAAATCAGGACAAGAACCAACCGATCTGG
                      ____________________________________________________________
consensus             CAATGATGAATTTTATATGGATGAACATGGTAAAATCAGGACAAGAACCAACCGATCTGG
 
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rJMSF024C24+          TGGGATACAGGGTGGAATATCAAATGGAGAAGTTATTAATATGAGAATAGCTTTCAAGCC
rJMSF039P16+          TGGGATACAGGGTGGAATATCAAATGGAGAAGTTATTAATATGAGAATAGCTTTCAAGCC
rJMFF016I04+          TGGGATACAGGGTGGAATATCAAATGGAGAAGTTATTAATATGAGAATAGCTTTCAAGCC
                      ____________________________________________________________
consensus             TGGGATACAGGGTGGAATATCAAATGGAGAAGTTATTAATATGAGAATAGCTTTCAAGCC
 
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rJMSF024C24+          TACATCTACAATCTCAAGGAAGCAGAATACAGTGACAAGAGACAAACACGAGACTGAGCT
rJMSF039P16+          TACATCTACAATCTCAAGGAAGCAGAATACAGTGACAAGAGACAAACACGAGACTGAGCT
rJMFF016I04+          TACATCTACAATCTCAAGGAAGCAGAATACAGTGACAAGAGACAAACACGAGACTGAGCT
                      ____________________________________________________________
consensus             TACATCTACAATCTCAAGGAAGCAGAATACAGTGACAAGAGACAAACACGAGACTGAGCT
 
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rJMSF024C24+          CATTGCTCGTGGTCGACATGATCCTTGTGTAGTGCCTCGAGCTGTTCCAATGGTGGAAGC
rJMSF039P16+          CATTGCTCGTGGTCGACATGATCCTTGTGTAGTGCCTCGAGCTGTTCCAATGGTGGAAGC
rJMFF016I04+          CATTGCTCGTGGTCGACATGATCCTTGTGTAGTGCCTCGAGCTGTTCCAATGGTGGAAGC
                      ____________________________________________________________
consensus             CATTGCTCGTGGTCGACATGATCCTTGTGTAGTGCCTCGAGCTGTTCCAATGGTGGAAGC
 
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rJMSF024C24+          CATGGTAGCCCTTGTGCTTGTTGATCAACTAATGGCACAATATGCTCAATGCATGCTTTT
rJMSF039P16+          CATGGTAGCCCTTGTGCTTGTTGATCAACTAATGGCACAATATGCTCAATGCATGCTTTT
rJMFF016I04+          CATGGTAGCCCTTGTGCTTGTTGATCAACTAATGGCACAATATGCTCAATGCATGCTTTT
                      ____________________________________________________________
consensus             CATGGTAGCCCTTGTGCTTGTTGATCAACTAATGGCACAATATGCTCAATGCATGCTTTT
 
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rJMSF024C24+          TCCAATAAACCCTGCATTACAGGAGCCCCTGCAATCAAACTCCGAGCCAGCAGCTGCTAA
rJMSF039P16+          TCCAATAAACCCTGCATTACAGGAGCCCCTGCAATCAAACTCCGAGCCAGCAGCTGCTAA
rJMFF016I04+          TCCAATAAACCCTGCATTACAGGAGCCCCTGCAATCAAACTCCGAGCCAGCAGCTGCTAA
rJMFF049F15+                             CAGGAGCCCCTGCAATCAAACTCCGAGCCAGCAGCTGTTAA
                      ____________________________________________________________
consensus             TCCAATAAACCCTGCATTACAGGAGCCCCTGCAATCAAACTCCGAGCCAGCAGCTGCTAA
 
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rJMSF024C24+          TGTTGCCCTTTGAATGGTTGGTCGCAAAATGCTGTCTACTTCATTGCTATGTTTTAGCTT
rJMSF039P16+          TGTTGCCCTTTGAATGGTTGGTCGCAAAATGCTGTCTACTTCATTGCTATGTTTTAGCTT
rJMFF016I04+          TGTTGCCCTTTGAATGGTTGGTCGCAAAATGCTGTCTACTTCATTGCTATGTTTTAGCTT
rJMFF049F15+          TGTTGCCCTTTGAATGGTTGGTCGCAAAATGCTGTCTACTTCATTGCTATGTTTTAGCTT
                      ____________________________________________________________
consensus             TGTTGCCCTTTGAATGGTTGGTCGCAAAATGCTGTCTACTTCATTGCTATGTTTTAGCTT
 
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rJMSF024C24+          TGCTTCACCCAACGTGTGCAAGTTTTGTTTGAAGGCTATATCATACCACCATACCTATAC
rJMSF039P16+          TGCTTCACCCAACGTGTGCAAGTTTTGTTTGAAGGCTATATCATACCACCATACCTATAC
rJMFF016I04+          TGCTTCACCCAACGTGTGCAAGTTTTGTTTGAAGGCTATATCATACCACCATACCTATAC
rJMFF049F15+          TGCTTCACCCAACGTGTGCAAGTTTTGTTTGAAGGCTATATCATACCCCCATACCTATAC
                      ____________________________________________________________
consensus             TGCTTCACCCAACGTGTGCAAGTTTTGTTTGAAGGCTATATCATACCACCATACCTATAC
 
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rJMSF024C24+          TCTGAACACTCTATTATGTATTATTCGGCGATTACAATTGTATTGCT             
rJMSF039P16+          TCTGAACACTCTATTATGTATTATTCGGCGATTACAATTGTATTGCTTTTGGATCTCTCT
rJMFF016I04+          TCTGAACACTCTATTATGTATTATTCGGCGATTACAATTGTATTGCTTTTGGATCTCTCT
rJMFF049F15+          TTTGAACACTTTATTATGTATTATTCGGCGATTACAATTGTATTGCTTTTGGATCTCTCT
                      ____________________________________________________________
consensus             TCTGAACACTCTATTATGTATTATTCGGCGATTACAATTGTATTGCTTTTGGATCTCTCT
 
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rJMSF039P16+          ATTATATTGTAGGTTGTTGATTAAA                                   
rJMFF016I04+          ATTATATTGTAGGTTGTTGATTAAACACAGTGGCAGGGCTTGTAGGAAGAATAAGGCCTT
rJMFF049F15+          ATTATATTGTAGGTTGTTGATTAAACCCAGTGGCAGGGCTTGTAGGAAGAATAAGGCCTT
                      ____________________________________________________________
consensus             ATTATATTGTAGGTTGTTGATTAAACCCAGTGGCAGGGCTTGTAGGAAGAATAAGGCCTT
 
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rJMFF016I04+          TAATTGGCAATTTTAGGTTTTTTCTACCATTTTCACCGAGACCAAT              
rJMFF049F15+          TAATTGGCAATTTTAGGTTTTTTTTACCATTTTCCCCGAGACCAATTGAATTTATACTTT
                      ____________________________________________________________
consensus             TAATTGGCAATTTTAGGTTTTTTTTACCATTTTCCCCGAGACCAATTGAATTTATACTTT