Contig 002699:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012H22Sequence573011861 (14)gb|EYU30283.1|4e-57hypothetical protein MIMGU_mgv1a000455mg [Erythranthe guttata]738002699 (3)dbj|BAK19067.1|7e-92GIGANTEA [Ipomoea nil]
JMFF035P02Sequence426011861 (14)dbj|BAK19067.1|2e-49GIGANTEA [Ipomoea nil]694002699 (3)dbj|BAK19067.1|2e-81GIGANTEA [Ipomoea nil]
JMFF046K07Sequence636011861 (14)dbj|BAK19067.1|1e-93GIGANTEA [Ipomoea nil]623002699 (3)dbj|BAK19067.1|3e-47GIGANTEA [Ipomoea nil]

Alignment

This contig is upended


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rJMFF035P02+                                                          ACTGGAGCTTCT
rJMFF012H22+               CCGATGGAATGCTTGTTGATGGTGAAGCATGCACCTTACCTCAACTGGAGCTTCT
                      ____________________________________________________________
consensus                  CCGATGGAATGCTTGTTGATGGTGAAGCATGCACCTTACCTCAACTGGAGCTTCT
 
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rJMFF035P02+          CGAAGTGACAGCTAGAGCAGTTCAACCAGTGCTCGAGTGGGGAGAATCTGGATTGGCAGT
rJMFF012H22+          CGAAGTGACAGCTAGAGCAGTTCAACCAGTGCTCGAGTGGGGAGAATCTGGATTGGCAGT
                      ____________________________________________________________
consensus             CGAAGTGACAGCTAGAGCAGTTCAACCAGTGCTCGAGTGGGGAGAATCTGGATTGGCAGT
 
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rJMFF035P02+          TGCAGATGGCCTCTCAAACCTTTTGAAGTGTCGTATACCAGCCACAGTTCGCTGTCTTTC
rJMFF012H22+          TGCAGATGGCCTCTCAAACCTTTTGAAGTGTCGTATACCAGCCACAGTTCGCTGTCTTTC
rJMFF046K07+                                              ACCAGCCACAGTTCGCTGTC-TTC
                      ____________________________________________________________
consensus             TGCAGATGGCCTCTCAAACCTTTTGAAGTGTCGTATACCAGCCACAGTTCGCTGTCTTTC
 
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rJMFF035P02+          TCATCCAAGTGCTCATGTCCGTGCTCTTAGCATATCAGTTCTTCGTGCAATTCTGCATTC
rJMFF012H22+          TCATCCAAGTGCTCATGTCCGTGCTCTTAGCATATCAGTTCTTCGTGCAATTCTGCATTC
rJMFF046K07+          TCATCCAAGTGCTCATGTCCGTGCTCTTAGCATATCAGTTCTTCGTGCAATTCTGCATTC
                      ____________________________________________________________
consensus             TCATCCAAGTGCTCATGTCCGTGCTCTTAGCATATCAGTTCTTCGTGCAATTCTGCATTC
 
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rJMFF035P02+          CGGTTCAATAAAATCGAGAGCCAAACCAGTGAATATGAACGGCATCCATGGTCCTGCATA
rJMFF012H22+          CGGTTCAATAAAATCGAGAGCCAAACCAGTGAATATGAACGGCATCCATGGTCCTGCATA
rJMFF046K07+          CGGTTCAATAAAATCGAGAGCCAAACCAGTGAATATGAACGGCATCCATGGTCCTGCATA
                      ____________________________________________________________
consensus             CGGTTCAATAAAATCGAGAGCCAAACCAGTGAATATGAACGGCATCCATGGTCCTGCATA
 
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rJMFF035P02+          TCAGTGCTTGAACGTAGGAGGCACTATTGACTGGCAAGCCGACATCGAGAGGTGCTTGAA
rJMFF012H22+          TCAGTGCTTGAACGTAGGAGGCACTATTGACTGGCAAGCCGACATCGAGAGGTGCTTGAA
rJMFF046K07+          TCAGTGCTTGAACGTAGGAGGCACTATTGACTGGCAAGCCGACATCGAGAGGTGCTTGAA
                      ____________________________________________________________
consensus             TCAGTGCTTGAACGTAGGAGGCACTATTGACTGGCAAGCCGACATCGAGAGGTGCTTGAA
 
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rJMFF035P02+          TTGCGAAGCTCATAGCCAGCTTGCAAATGGGATGTCTGCAGAATTTCTTGATACTGCTGC
rJMFF012H22+          TTGCGAAGCTCATAGCCAGCTTGCAAATGGGATGTCTGCAGAATTTCTTGATACTGCTGC
rJMFF046K07+          TTGCGAAGCTCATAGCCAGCTTGCAAATGGGATGTCTGCAGAATTTCTTGATACTGCTGC
                      ____________________________________________________________
consensus             TTGCGAAGCTCATAGCCAGCTTGCAAATGGGATGTCTGCAGAATTTCTTGATACTGCTGC
 
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rJMFF035P02+          TAAGGAGTTAGGCTGCACTATATCTGTGTGAAGTTGGTTCATCATTTTGGGTGTTATTAG
rJMFF012H22+          TAAGGAGTTAGGCTGCACTATATCTGTGTGAAGTTGGTTCATCATTTTGGGTGTTATTAG
rJMFF046K07+          TAAGGAGTTAGGCTGCACTATATCTGTGTGAAGTTGGTTCATCATTTTGGGTGTTATTAG
                      ____________________________________________________________
consensus             TAAGGAGTTAGGCTGCACTATATCTGTGTGAAGTTGGTTCATCATTTTGGGTGTTATTAG
 
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rJMFF035P02+          GTGGTTTCTTACTCAACTTCTCCGAAAAACCTTTCTTCACCGAATCAAAAGAATAGAACG
rJMFF012H22+          GTGGTTTCTTACTCAACTTCTCCGAAAAACCTTTCTTCACCGAATCAAAAGAATAGAACG
rJMFF046K07+          GTGGTTTCTTACTCAACTTCTCCGAAAAACCTTTCTTCACCGAATCAAAAGAATAGAACG
                      ____________________________________________________________
consensus             GTGGTTTCTTACTCAACTTCTCCGAAAAACCTTTCTTCACCGAATCAAAAGAATAGAACG
 
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rJMFF035P02+          AATGCATTACCAATTCGTTTGGTGGATGCAGAAACTGAATCCAAACTAAATGTTGCTTTT
rJMFF012H22+          AATGCATTACCAATTCGTTTGGTGGATGCAGAAACTGAATCCAAACTAAATGTTGCTTTT
rJMFF046K07+          AATGCATTACCAATTCGTTTGGTGGATGCAGAAACTGAATCCAAACTAAATGTTGCTTTT
                      ____________________________________________________________
consensus             AATGCATTACCAATTCGTTTGGTGGATGCAGAAACTGAATCCAAACTAAATGTTGCTTTT
 
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rJMFF035P02+          CCAGTGAGTGATTGGTATATACTGCAAACTTTGACATAGTAAGTTATGCATTGAATCAGT
rJMFF012H22+          CCAGTGAGTGATTGGTATATACTGCAAACTTTGACATAGTAAGTTATGCATTGAATCAGT
rJMFF046K07+          CCAGTGAGTGATTGGTATATACTGCAAACTTTGACATAGTAAGTTATGCATTGAATCAGT
                      ____________________________________________________________
consensus             CCAGTGAGTGATTGGTATATACTGCAAACTTTGACATAGTAAGTTATGCATTGAATCAGT
 
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rJMFF035P02+          GCCCCTATGGTATGGTATGGTATGTATGTATAACCTAAACCACCATAGCATAATCAAGAA
rJMFF012H22+          GCCCCTATGGTATGGTATGGTATGTATGTATAACCTAAACCACCATAGCATAATCAAGAA
rJMFF046K07+          GCCCCTATGGTATGGTTTGGTATGTATGTATAACCTAAACCACCATAGCATAATCAAGAA
                      ____________________________________________________________
consensus             GCCCCTATGGTATGGTATGGTATGTATGTATAACCTAAACCACCATAGCATAATCAAGAA
 
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rJMFF035P02+          ATAGATGTTTGATGCTT                                           
rJMFF012H22+          ATAGATGTTTGATGCTT                                           
rJMFF046K07+          ATAGATGTTTGATGCTTTACAAATTTGACAGATAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             ATAGATGTTTGATGCTTTACAAATTTGACAGATAAAAAAAAAAAAAAAACTCTCCAGGGT