Contig 002681:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016D23Sequence489011932 (3)679002681 (2)ref|XP_006341915.1|2e-09PREDICTED: zinc finger protein JACKDAW-like [Solanum tuberosum]
JMFF043P12Sequence633011932 (3)gb|KDO84481.1|1e-23hypothetical protein CISIN_1g026210mg [Citrus sinensis] gb|KDO84482.1| hypotheti610002681 (2)ref|XP_006341915.1|1e-05PREDICTED: zinc finger protein JACKDAW-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMFF016D23+                                              GGCAAGTGCAGAGCCAATGTTTCT
                      ____________________________________________________________
consensus                                                 GGCAAGTGCAGAGCCAATGTTTCT
 
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rJMFF016D23+          GTCTTTATCGTGTCCGATTTATCTCTCCGGCAACGCGGCTTCATCTGTNTTTCCATGGGC
rJMFF043P12+                                                            TTCCATGGGC
                      ____________________________________________________________
consensus             GTCTTTATCGTGTCCGATTTATCTCTCCGGCAACGCGGCTTCATCTGTNTTTCCATGGGC
 
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rJMFF016D23+          GGCGGCATCCCAAGATCTCCACCGGCAGTACGCAGCACCTAGCCGTCCCCCG-CGGCGCT
rJMFF043P12+          GGCGGCATCCCAAGATCTCCACCGGCAGTACGCAGCACCTAGCCGTCCCCCGCCGGCGCT
                      ____________________________________________________________
consensus             GGCGGCATCCCAAGATCTCCACCGGCAGTACGCAGCACCTAGCCGTCCCCCGCCGGCGCT
 
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rJMFF016D23+          CTCAGGGACGGCGTTGCTGCAAAAGGCGGCCGAAATCGGTGCAACGTCGTCTCACGGCTC
rJMFF043P12+          CTCAGCGACGGCGTTGCTGCAAAAGGCGGCCGAAATCGGTGCAACGTCGTCTCACGGCTC
                      ____________________________________________________________
consensus             CTCAGGGACGGCGTTGCTGCAAAAGGCGGCCGAAATCGGTGCAACGTCGTCTCACGGCTC
 
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rJMFF016D23+          GTTTCTCTGCGGCCTTGGATTAGCGACGTCGAGCGGTTCTAACCCGCAAGATGGCTTAAC
rJMFF043P12+          GTTTCTCTGCGGCCTTGGATTAGCGACGTCGAGCGGTTCTAACCCGCAAGATGGCTTAAC
                      ____________________________________________________________
consensus             GTTTCTCTGCGGCCTTGGATTAGCGACGTCGAGCGGTTCTAACCCGCAAGATGGCTTAAC
 
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rJMFF016D23+          GAAATGGAACGAACATGTAAAGCAGGAGAATAAGTCAATCTCGTCGCCGTCGTCTCCGAC
rJMFF043P12+          GAAATGGAACGAACATGTAAAGCAGGAGAATAAGTCAATCTCGTCGCCGTCGTCTCCGAC
                      ____________________________________________________________
consensus             GAAATGGAACGAACATGTAAAGCAGGAGAATAAGTCAATCTCGTCGCCGTCGTCTCCGAC
 
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rJMFF016D23+          GACAATGATCTTCACCAACAACCCTCCGACGCTCGATTTTCTCGGTGTGGGAGCGGGTGC
rJMFF043P12+          GACAATGATCTTCACCAACAACCCTCCGACGCTCGATTTTCTCGGTGTGGGAGCGGGTGC
                      ____________________________________________________________
consensus             GACAATGATCTTCACCAACAACCCTCCGACGCTCGATTTTCTCGGTGTGGGAGCGGGTGC
 
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rJMFF016D23+          CACTCCGGCTTCTTTTCTGGGCTCAATGAATAATAGCGGCGGCGGCGGCGGCGTGGCTTC
rJMFF043P12+          CACTCCGGCTTCTTTTCTGGGCTCAATGAATAATAGCGGCGGCGGCGGCGGCGTGGCTTC
                      ____________________________________________________________
consensus             CACTCCGGCTTCTTTTCTGGGCTCAATGAATAATAGCGGCGGCGGCGGCGGCGTGGCTTC
 
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rJMFF016D23+          TACCGGAGACTGTTGGGATGACACCTCCGATCGGAAATTCGGTTTCCATTAGCAAAAATA
rJMFF043P12+          TACCGGAGACTGTTGGGATGACACCTCCGATCGGAAATTCGGTTTCCATTAGCAAAAATA
                      ____________________________________________________________
consensus             TACCGGAGACTGTTGGGATGACACCTCCGATCGGAAATTCGGTTTCCATTAGCAAAAATA
 
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rJMFF016D23+          TAATAATGAATGCTTTTTTGTCCATTCAATTCAATTCGTAGTTTTAATCCTTTGGCGTTT
rJMFF043P12+          TAATAATGAATGCTTTTTTGTCCATTCAATTCAATTCGTAGTTTTAATCCTTTGGCGTTT
                      ____________________________________________________________
consensus             TAATAATGAATGCTTTTTTGTCCATTCAATTCAATTCGTAGTTTTAATCCTTTGGCGTTT
 
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rJMFF016D23+          CAATCCCCACCAGGATCCCAGAAAAAACCTTAATTATAAATCGTAGTCGCAGGTTGATGG
rJMFF043P12+          CAATCCCCACCAGGATCCCAGAAAAAACCTTAATTATAAATCGTAGTCGCAGGTTGATGG
                      ____________________________________________________________
consensus             CAATCCCCACCAGGATCCCAGAAAAAACCTTAATTATAAATCGTAGTCGCAGGTTGATGG
 
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rJMFF016D23+          AACTTAGTTTTGTCTGTATATATTGTCATTTGATTATGTAGCTAGCAGGTTAGTGA    
rJMFF043P12+          AACTTAGTTTTGTCTGTATATATTGTCATTTGATTATGTAGCTAGCAGGTTAGTGATGAT
                      ____________________________________________________________
consensus             AACTTAGTTTTGTCTGTATATATTGTCATTTGATTATGTAGCTAGCAGGTTAGTGATGAT