Contig 002676:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043L12Sequence614002442 (2)ref|XP_009415499.1|1e-16PREDICTED: TOX high mobility group box family member 4-A-like isoform X2 [Musa 535002676 (2)
JMSF047I10Sequence694002442 (2)ref|XP_004502456.1|4e-17PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Ci763002676 (2)ref|XP_009603929.1|3e-12PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like iso

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF047I10+ TTCAGTAGNGTCGACTTCTTTTCACATCAACGCCCATCAATGCTGCAAAC
                      ____________________________________________________________
consensus TTCAGTAGNGTCGACTTCTTTTCACATCAACGCCCATCAATGCTGCAAAC
 
. : . : . : . : . : . :
rJMSF047I10+ TATTNTATGACGAAGCCAGAACGGCCCCTCTCAGATCCAAGCGTTCTCATGCCAGCACAG
                      ____________________________________________________________
consensus TATTNTATGACGAAGCCAGAACGGCCCCTCTCAGATCCAAGCGTTCTCATGCCAGCACAG
 
. : . : . : . : . : . :
rJMSF047I10+ GCGGTTAACCCTCCTCCGAGCAACCCTTATCAGTCGGTGATGGTGATGCACCCGACAATG
                      ____________________________________________________________
consensus GCGGTTAACCCTCCTCCGAGCAACCCTTATCAGTCGGTGATGGTGATGCACCCGACAATG
 
. : . : . : . : . : . :
rJMSF047I10+ CAGGGCCAATTCTCCAACTCCCAAGCTCAGTATCATTCGCTCCCAAACCCACCTTCCCAG
                      ____________________________________________________________
consensus CAGGGCCAATTCTCCAACTCCCAAGCTCAGTATCATTCGCTCCCAAACCCACCTTCCCAG
 
. : . : . : . : . : . :
rJMSF047I10+ CAATACTTACAACCCTCGGGTGGAATTGTGGGTTCATATGGGTATGGCGGGATTCCTCCC
                      ____________________________________________________________
consensus CAATACTTACAACCCTCGGGTGGAATTGTGGGTTCATATGGGTATGGCGGGATTCCTCCC
 
. : . : . : . : . : . :
rJMSF047I10+ GGGCCATCTCCCGCCCCTCCATACTTGGGTCCTTTGGTGCCCTTAGCCCAGCCGCCATTG
                      ____________________________________________________________
consensus GGGCCATCTCCCGCCCCTCCATACTTGGGTCCTTTGGTGCCCTTAGCCCAGCCGCCATTG
 
. : . : . : . : . : . :
rJMSF047I10+ CAAATGAGTCAGCAACAGCTAACGATGCCCCACCAGTTAGCGTTGCCTCAACAAGCACAT
                      ____________________________________________________________
consensus CAAATGAGTCAGCAACAGCTAACGATGCCCCACCAGTTAGCGTTGCCTCAACAAGCACAT
 
. : . : . : . : . : . :
rJMSF047I10+ CCGCCTCCAAATTTCCGGCCATTGCCCGCTACTCAGCCCCCTCAACCCGGAATGGTTTAC
rJMFF043L12+ TCCAAATTTCCGGCCATTGTCCGCTACTCAGCCCCCTCAACCCGGAATGGTTTAC
                      ____________________________________________________________
consensus CCGCCTCCAAATTTCCGGCCATTGTCCGCTACTCAGCCCCCTCAACCCGGAATGGTTTAC
 
. : . : . : . : . : . :
rJMSF047I10+ TATTCTCAACCCAATCGTTCCCAGTGACTATCTCGGCTTAATAGCTCACAGCCACCATAC
rJMFF043L12+ TATTCTCAACCCAATCGTTCCCAGTGACTATCTCGGCTTAATAGCTCACAGCCACCATAC
                      ____________________________________________________________
consensus TATTCTCAACCCAATCGTTCCCAGTGACTATCTCGGCTTAATAGCTCACAGCCACCATAC
 
. : . : . : . : . : . :
rJMSF047I10+ AATCATCAAGGAAGAAGCACCAGACATACAGAGGTGTCCAATTGACAACATTACATAGGT
rJMFF043L12+ AATCATCAAGGAAGAAGCACCAGACATACAGAGGTGTCCAATTGACAACATTACATAGGT
                      ____________________________________________________________
consensus AATCATCAAGGAAGAAGCACCAGACATACAGAGGTGTCCAATTGACAACATTACATAGGT
 
. : . : . : . : . : . :
rJMSF047I10+ AAATGCTAAAAGCACAGGTTATAGTTTGCCATGTTTTCATGAAGCTCTGTCTGGTTAGCA
rJMFF043L12+ AAATGCTAAAAGCACAGGTTATAGTTTGCCATGTTTTCATGAAGCTCTGTCTGGTTAGCA
                      ____________________________________________________________
consensus AAATGCTAAAAGCACAGGTTATAGTTTGCCATGTTTTCATGAAGCTCTGTCTGGTTAGCA
 
. : . : . : . : . : . :
rJMSF047I10+ CATTCCTAGAATGTCCACCCACCCCAGTGTTGTCACCATTGTTGTCTCAGGCATTTTTTT
rJMFF043L12+ CATTCCTAGAATGTCCACCCACCCCAGTGTTGTCACCATTGTTGTCTCAGGCATTTTTTT
                      ____________________________________________________________
consensus CATTCCTAGAATGTCCACCCACCCCAGTGTTGTCACCATTGTTGTCTCAGGCATTTTTTT
 
. : . : . : . : . : . :
rJMSF047I10+ TCTTCTTTTCCATTTCTGTAAAATGATGGATAGAGGCAGCTGACAATTTTGTA
rJMFF043L12+ TCTTCTTTTCCATTTCTGTAAAATGATGGATAGAGGCAGCTGACAATTTTGTATTGCAAG
                      ____________________________________________________________
consensus TCTTCTTTTCCATTTCTGTAAAATGATGGATAGAGGCAGCTGACAATTTTGTATTGCAAG
 
. : . : . : . : . : . :
rJMFF043L12+ ACAACCTAGATTTATAGTTAATTCTGTTGATGCCATTATATGGAGTCATTCCTTCAGCCT
                      ____________________________________________________________
consensus ACAACCTAGATTTATAGTTAATTCTGTTGATGCCATTATATGGAGTCATTCCTTCAGCCT
 
. : . : . : . : . : . :
rJMFF043L12+ GTATCTAACAGAAGCCATATCTGTACTGCTCATATCCAGATCAGCCTGTATCAAGCTTGT
                      ____________________________________________________________
consensus GTATCTAACAGAAGCCATATCTGTACTGCTCATATCCAGATCAGCCTGTATCAAGCTTGT
 
. : . : . : . : . : . :
rJMFF043L12+ GAAAGTTTCCATTTAGTAATTCAAAAGATTTTCTTCATGTTTGAGTAAAAAAAAAAAAAG
                      ____________________________________________________________
consensus GAAAGTTTCCATTTAGTAATTCAAAAGATTTTCTTCATGTTTGAGTAAAAAAAAAAAAAG