Contig 002671:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004G23Sequence222005892 (6)380002671 (7)emb|CAN77628.1|6e-75hypothetical protein VITISV_029424 [Vitis vinifera]
JMFF040N10Sequence566005892 (6)ref|XP_008348693.1|4e-45PREDICTED: dihydroorotase, mitochondrial-like isoform X1 [Malus domestica]786002671 (7)emb|CAN77628.1|2e-73hypothetical protein VITISV_029424 [Vitis vinifera]
JMFF043D19Sequence633005892 (6)ref|XP_008348693.1|1e-44PREDICTED: dihydroorotase, mitochondrial-like isoform X1 [Malus domestica]628002671 (7)emb|CAN77628.1|2e-70hypothetical protein VITISV_029424 [Vitis vinifera]
JMFN020H07Sequence578002671 (7)emb|CAN77628.1|1e-62hypothetical protein VITISV_029424 [Vitis vinifera]
JMSF025L15Sequence682005892 (6)ref|XP_002274917.2|2e-90PREDICTED: dihydroorotase, mitochondrial isoform X2 [Vitis vinifera]758002671 (7)emb|CAN77628.1|7e-114hypothetical protein VITISV_029424 [Vitis vinifera]
JMSF026L15Sequence566005892 (6)ref|XP_010656978.1|7e-70PREDICTED: dihydroorotase, mitochondrial isoform X1 [Vitis vinifera]814002671 (7)ref|XP_010656979.1|4e-119PREDICTED: dihydroorotase, mitochondrial isoform X3 [Vitis vinifera] emb|CBI2186
JMSF051F11Sequence137005892 (6)792002671 (7)ref|XP_010656979.1|9e-131PREDICTED: dihydroorotase, mitochondrial isoform X3 [Vitis vinifera] emb|CBI2186

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF051F11+ GAGAGGTNACTAGCCCAGAGGTTGATGTATTTGATCGAGAAAAGGTATT
rJMSF026L15+ CAGAGGTTGATGTATTTGATCGAG-AAAGGTATT
                      ____________________________________________________________
consensus GAGAGGTNACTAGCCCAGAGGTTGATGTATTTGATCGAGAAAAGGTATT
 
. : . : . : . : . : . :
rJMSF051F11+ CATTGAGACAGTTTTAGGCCCTTTGGTTCAGAGACTTCCACAGTTGAAGATTGTGATGGA
rJMSF026L15+ CATTGAGACAGTTTTAGGCCCTTTGGTTCAGAGACTTCCACAGNTGAAGATTGTGATGGA
rJMSF025L15+ GAAGATTGTGATGGA
rJMFF040N10+ GAAGATTGTGATGGA
                      ____________________________________________________________
consensus CATTGAGACAGTTTTAGGCCCTTTGGTTCAGAGACTTCCACAGTTGAAGATTGTGATGGA
 
. : . : . : . : . : . :
rJMSF051F11+ GCACGTCACCACC-TCGGATGCTGTGAAGTTTGTAGAATCTTGCCGTGAAGGATCTGTTG
rJMSF026L15+ GCACGTCACCACC-TCGGATGCTGTGAAGTTTGTAGAATCTTGCCGTGAAGGATCTGTTG
rJMFF004G23+ CGTGAAGGATCTGTTG
rJMSF025L15+ GCACGTCACCACC-TCGGATGCTGTGAAGTTTGTAGAATCTTGCCGTGAAGGATCTGTTG
rJMFF040N10+ GCACGTCACCACCTTCGGATGCTGTGAAGTTTGTAGAATCTTGCCGTGAAGGATCTGTTG
                      ____________________________________________________________
consensus GCACGTCACCACC-TCGGATGCTGTGAAGTTTGTAGAATCTTGCCGTGAAGGATCTGTTG
 
. : . : . : . : . : . :
rJMSF051F11+ CAGCCACTGTCACTCCACAACATCTTGTTCTAAACAGGAATTCTTTGTTCCAAGGGGGAC
rJMSF026L15+ CAGCCACTGTCACTCCACAACATCTTGTTCTAAACAGGAATTCTTTGTTNCAAGGGGGAC
rJMFF004G23+ CAGCCACTGTCACTCCACAACATCTTGTTCTAAACAGGAATTCTTTGTTCCAAGGGGGAC
rJMSF025L15+ CAGCCACTGTCACTCCACAACATCTTGTTCTAAACAGGAATTCTTTGTTCCAAGGGGGAC
rJMFF040N10+ CAGCCACTGTCACTCCACAACATCTTGTTCTAAACAGGAATTCTTTGTTCCAAGGGGGAC
                      ____________________________________________________________
consensus CAGCCACTGTCACTCCACAACATCTTGTTCTAAACAGGAATTCTTTGTTCCAAGGGGGAC
 
. : . : . : . : . : . :
rJMSF051F11+ TGCAGCCACACAATTATTGTCTTCCCGTACTTAAAAGAGAGATCCATAGACAAGCTATTG
rJMSF026L15+ TGCAGCCACACAATTATTGTCTTCCCGTACTTAAAAGAGAGATCCATAGACAAGCTATTG
rJMFF004G23+ TGCAGCCACACAATTATTGTCTTCCCGTACTTAAAAGAGAGATCCATAGACAAGCTATTG
rJMSF025L15+ TGCAGCCACACAATTATTGTCTTCCCGTACTTAAAAGAGAGATCCATAGACAAGCTATTG
rJMFF040N10+ TGCAGCCACACAATTATT-TCTTCCCGTACTTAAAAGAGAGATCCATAGACAAGCTATTG
rJMFF043D19+ AAAAGAGAGATCCATAGACAAGCTATTG
                      ____________________________________________________________
consensus TGCAGCCACACAATTATTGTCTTCCCGTACTTAAAAGAGAGATCCATAGACAAGCTATTG
 
. : . : . : . : . : . :
rJMSF051F11+ TCTCAGCGGTGACGAGTGGCAGCAAACGATTTTTCCTCGGAACTGATAGCGCCCCGCATG
rJMSF026L15+ TCTCAGCGGTGACGAGTGGCAGCAAACGATTTTTCCTCGGAACTGATAGCGCCCCGCATG
rJMFF004G23+ TCTCAGCGGTGACGAGTGGCAGCAAACGATTTTTCCTCGGAACTGATAGCGCCCCGCATG
rJMSF025L15+ TCTCAGCGGTGACGAGTGGCAGCAAACGATTTTTCCTCGGAACTGATAGCGCCCCGCATG
rJMFF040N10+ TCTCAGCGGTGACGAGTGGCAGCAAACGATTTTTCCTCGGAACTGATAGCGCCCCGCATG
JMFN020H07- GCGGTGACGAGTGGCAGCAAACGATTTTTCCTCGGAACTGATAGCGCCCCGCATG
rJMFF043D19+ TCTCAGCGGTGACGAGTGGCAGCAAACGATTTTTCCTCGGAACTGATAGCGCCCCGCATG
                      ____________________________________________________________
consensus TCTCAGCGGTGACGAGTGGCAGCAAACGATTTTTCCTCGGAACTGATAGCGCCCCGCATG
 
. : . : . : . : . : . :
rJMSF051F11+ ATCGAAAGAAGAAAGAATGTCCATGTGGATGCGCTGGTATTTACAACTCTACCGTAGCCT
rJMSF026L15+ ATCGAAAGAAGAAAGAATGTCCATGTGGATGCGCTGGTATTTACAACTCTACCGTAGCCT
rJMFF004G23+ ATCGAAAGAAGAAAGAATGTCCATGTGGATGCGCTGGTATTTACAACTCTACCGTAGCCT
rJMSF025L15+ ATCGAAAGAAGAAAGAATGTCCATGTGGATGCGCTGGTATTTACAACTCTACCGTAGCCT
rJMFF040N10+ ATCGAAAGAAGAAAGAATGTCCATGTGGATGCGCTGGTATTTACAACTCTACCGTAGCCT
JMFN020H07- ATCGAAAGAAGAAAGAATGTCCATGTGGATGCGCTGGTATTTACAACTCTACCGTAGCCT
rJMFF043D19+ ATCGAAAGAAGAAAGAATGTCCATGTGGATGCGCTGGTATTTACAACTCTACCGTAGCCT
                      ____________________________________________________________
consensus ATCGAAAGAAGAAAGAATGTCCATGTGGATGCGCTGGTATTTACAACTCTACCGTAGCCT
 
. : . : . : . : . : . :
rJMSF051F11+ TGTCAGTGTACGCAAAGGTTTTCGAGGAGGCTGGTGCCCTCGACAAGCTAGAAGCATTTA
rJMSF026L15+ TGTCAGTGTACGCAAAGGTTTTCGAGGAGGCTGGTGCCCTCGACAAGCTAGAAGCATTTA
rJMFF004G23+ TGTCAGTGTACGCAAAGGTTTTCGAGGAGGCTGGTGCCCTCGACAAGCTAGAAGCATTTA
rJMSF025L15+ TGTCAGTGTACGCAAAGGTTTTCGAGGAGGCTGGTGCCCTCGACAAGCTAGAAGCATTTA
rJMFF040N10+ TGTCAGTGTACGCAAAGGTTTTCGAGGAGGCTGGTGCCCTCGACAAGCTAGAAGCATTTA
JMFN020H07- TGTCAGTGTACGCAAAGGTTTTCGAGGAGGCTGGTGCCCTCGACAAGCTAGAAGCATTTA
rJMFF043D19+ TGTCAGTGTACGCAAAGGTTTTCGAGGAGGCTGGTGCCCTCGACAAGCTAGAAGCATTTA
                      ____________________________________________________________
consensus TGTCAGTGTACGCAAAGGTTTTCGAGGAGGCTGGTGCCCTCGACAAGCTAGAAGCATTTA
 
. : . : . : . : . : . :
rJMSF051F11+ CAAGCTTTAACGGACCAGATTTCTATGGCCTCCCGAGGAACACAACCAAAATTAAACTGA
rJMSF026L15+ CAAGCTTTAACGGACCAGATTTCTATGGCCTCCCGAGGAACACAACCAAAATTAAACTGA
rJMFF004G23+ CAAGCTTTAACGGACCAGATTTCTATGGCCTCCCGAGGAA
rJMSF025L15+ CAAGCTTTAACGGACCAGATTTCTATGGCCTCCCGAGGAACACAACCAAAATTAAACTGA
rJMFF040N10+ CAAGCTTTAACGGACCAGATTTCTATGGCCTCCCGAGGAACACAACCAAAATTAAACTGA
JMFN020H07- CAAGCTTTAACGGACCAGATTTCTATGGCCTCCCTAGGAACACAACCAAAATTAAACTGA
rJMFF043D19+ CAAGCTTTAACGGACCAGATTTCTATGGCCTCCCGAGGAACACAACCAAAATTAAACTGA
                      ____________________________________________________________
consensus CAAGCTTTAACGGACCAGATTTCTATGGCCTCCCGAGGAACACAACCAAAATTAAACTGA
 
. : . : . : . : . : . :
rJMSF051F11+ CTAAAACTCCATGGAAGGTACCAAAATCGTATCCTTATGCATCTGGTGACGTGATCCCCA
rJMSF026L15+ CTAAAACTCCATGGAAGGTACCAAAATCGTATCCTTATGCATCTGGTGACGTGATCCCCA
rJMSF025L15+ CTAAAACTCCATGGAAGGTACCAAAATCGTATCCTTATGCATCTGGTGACGTGATCCCCA
rJMFF040N10+ CTAAAACTCCATGGAAGGTACCAAAATCGTATCCTTATGCATCTGGTGACGTGATCCCCA
JMFN020H07- CTAAAACTCCATGGAAGGTACCAAAATCGTATCCTTATGCATCTGGTGACGTGATCCCCA
rJMFF043D19+ CTAAAACTCCATGGAAGGTACCAAAATCGTATCCTTATGCATCTGGTGACGTGATCCCCA
                      ____________________________________________________________
consensus CTAAAACTCCATGGAAGGTACCAAAATCGTATCCTTATGCATCTGGTGACGTGATCCCCA
 
. : . : . : . : . : . :
rJMSF051F11+ TGTTTGCCGGTGAAACATTGGACTGGCAGCCATTCTCTCTATAAGCATATTAGAAACATT
rJMSF026L15+ TGTTTGCCGGTGAAACATTGGACTGGCAGCCATTCTCTCTATAAGCATATTAGAAACATT
rJMSF025L15+ TGTTTGCCGGTGAAACATTGGACTGGCAGCCATTCTCTCTATAAGCATATTAGAAACATT
rJMFF040N10+ TGTTTGCCGGTGAAACATTGGACTGGCAGCCATTCTCTCTATAAGCATATTAGAAACATT
JMFN020H07- TGTTTGCCGGTGAAACATTGGACTGGCAGCCATTCTCTCTATAAGCATATTAGAAACATT
rJMFF043D19+ TGTTTGCCGGTGAAACATTGGACTGGCAGCCATTCTCTCTATAAGCATATTAGAAACATT
                      ____________________________________________________________
consensus TGTTTGCCGGTGAAACATTGGACTGGCAGCCATTCTCTCTATAAGCATATTAGAAACATT
 
. : . : . : . : . : . :
rJMSF051F11+ TTCAGAATAAGGATGTTGGCATATGATGTTGGAACATCATAATAAAACCAACAAACAACC
rJMSF026L15+ TTCAGAATAAGGATGTTGGCATATGATGTTGGAACATCATAATAAAACCAACAAACAACC
rJMSF025L15+ TTCAGAATAAGGATGTTGGCATATGATGTTGGAACATCATAATAAAACCAACAAACAACC
rJMFF040N10+ TTCAGAATAAGGATGTTGGCATATGATGTTGGAACATCATAATAAAACCAACAAACAACC
JMFN020H07- TTCAGAATAAGGATGTTGGCATATGATGTTGGAACATCATAATAAAACCAACAAACAACC
rJMFF043D19+ TTCAGAATAAGGATGTTGGCATATGATGTTGGAACATCATAATAAAACCAACAAACAACC
                      ____________________________________________________________
consensus TTCAGAATAAGGATGTTGGCATATGATGTTGGAACATCATAATAAAACCAACAAACAACC
 
. : . : . : . : . : . :
rJMSF051F11+ TTAATTAGCTACTGCAGAAGGGATGATAATCTTATTCTGTGCATTGGATGCCAACTTGTA
rJMSF026L15+ TTAATTAGCTACTGCAGAAGGGATGATAATCTTATTCTGTGCATTGGATGCCAACTTGTA
rJMSF025L15+ TTAATTAGCTACTGCAGAAGGGATGATAATCTTATTCTGTGCATTGGATGCCAACTTGTA
rJMFF040N10+ TTAATTAGCTACTGCAGAAGGGATGATAATCTTATTCTGTGCATTGGATGCCAACTTGTA
JMFN020H07- TTAATTAGCTACTGCAGAAGGGATGATAATCTTATTCTGTGCATTGGATGCCAACTTGTA
rJMFF043D19+ TTAATTAGCTACTGCAGAAGGGATGATAATCTTATTCTGTGCATTGGATGCCAACTTGTA
                      ____________________________________________________________
consensus TTAATTAGCTACTGCAGAAGGGATGATAATCTTATTCTGTGCATTGGATGCCAACTTGTA
 
. : . : . : . : . : . :
rJMSF051F11+ AACAGCTTTT
rJMSF026L15+ AACAGCTTTTTAGTTAACAATTAAGTTGAAATTTACGCCTCGATTATCTGCGTCTTATGA
rJMSF025L15+ AACAGCTTTTTAGTTAACAATTAAGTTGAAATTTACGCCTCGATTATCTGCGTCTTATGA
rJMFF040N10+ AACAGCTTTTTAGTTAACAATTAAGTTGAAATTTACGCCTCGATTATCTGCGTCTTATGA
JMFN020H07- AACAGCTTTTTAGTTAACAATTAAGTTGAAATTTACGCCTCGATTATCTGCGTCTTATGA
rJMFF043D19+ AACAGCTTTTTAGTTAACAATTAAGTTGAAATTTACGCCTCGATTATCTGCGTCTTATGA
                      ____________________________________________________________
consensus AACAGCTTTTTAGTTAACAATTAAGTTGAAATTTACGCCTCGATTATCTGCGTCTTATGA
 
. : . : . : . : . : . :
rJMSF026L15+ TG
rJMSF025L15+ TGT
rJMFF040N10+ TGTTAAACCTCTTAATTAAGAAGAAA
JMFN020H07- TGTTAAACCTCTTAATTAAGAAGAAATATTAGTATTTTTGTTT
rJMFF043D19+ TGTTAAACCTCTTAATTAAGAAGAAATATTAGTATTTTTGTTTACAAAAAAAAAAAAAAA
                      ____________________________________________________________
consensus TGTTAAACCTCTTAATTAAGAAGAAATATTAGTATTTTTGTTTACAAAAAAAAAAAAAAA