clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF035G20 | Sequence | 575 | 007450 (4) | ref|XP_011099633.1| | 6e-44 | PREDICTED: tubby-like F-box protein 5 [Sesamum indicum] | 637 | 002655 (4) | ref|XP_004232417.1| | 8e-61 | PREDICTED: tubby-like F-box protein 5 [Solanum lycopersicum] ref|XP_010316378.1| |
JMFF040H16 | Sequence | 535 | 007450 (4) | ref|XP_011099633.1| | 1e-25 | PREDICTED: tubby-like F-box protein 5 [Sesamum indicum] | 688 | 002655 (4) | ref|XP_004232417.1| | 3e-65 | PREDICTED: tubby-like F-box protein 5 [Solanum lycopersicum] ref|XP_010316378.1| |
JMFF041I02 | Sequence | 639 | 007450 (4) | ref|XP_011099633.1| | 3e-58 | PREDICTED: tubby-like F-box protein 5 [Sesamum indicum] | 615 | 002655 (4) | ref|NP_001266362.1| | 5e-55 | uncharacterized protein LOC101202709 [Zea mays] gb|ACF80993.1| unknown [Zea mays |
JMSF024L18 | Sequence | 643 | 007450 (4) | ref|XP_011099633.1| | 8e-51 | PREDICTED: tubby-like F-box protein 5 [Sesamum indicum] | 765 | 002655 (4) | ref|XP_009779244.1| | 2e-91 | PREDICTED: tubby-like F-box protein 5 [Nicotiana sylvestris] ref|XP_009779245.1| |
This contig is upended
. : . : . : . : . : . :
rJMSF024L18+ CAAGCAAGTGTCTCCAATANTATCTGCGTGTAAT
____________________________________________________________
consensus CAAGCAAGTGTCTCCAATANTATCTGCGTGTAAT
. : . : . : . : . : . :
rJMSF024L18+ TACAGTGTTGCCAGTATTTCCTACGAACTCAATGTCCTACGCACCAGAGGGCCGAGGAGA
____________________________________________________________
consensus TACAGTGTTGCCAGTATTTCCTACGAACTCAATGTCCTACGCACCAGAGGGCCGAGGAGA
. : . : . : . : . : . :
rJMSF024L18+ ATGCGATGCATAATGCAATCAATTCCTTTCTCCTCGATTCAGGAGGGGGGCACAGCTCCC
rJMFF035G20+ TCCC
rJMFF040H16+ CTCGATTCAGGAGGGGGGCACAGCTCCC
____________________________________________________________
consensus ATGCGATGCATAATGCAATCAATTCCTTTCTCCTCGATTCAGGAGGGGGGCACAGCTCCC
. : . : . : . : . : . :
rJMSF024L18+ ACGCCAACATCATTCCCACAAAGCTTTGATAGAACATCATCGTCCTTAACAGCTTCAATA
rJMFF035G20+ ACGCCAACATCATTCCCACAAAGCTTTGATAGAACATCATCGTCCTTAACAGCTTCAATA
rJMFF041I02+ ACATCATCGTCCTTAACAGCTTCAATA
rJMFF040H16+ ACGCCAACATCATTCCCACAAAGCTTTGATAGAACATCATCGTCCTTAACAGCTTCAATA
____________________________________________________________
consensus ACGCCAACATCATTCCCACAAAGCTTTGATAGAACATCATCGTCCTTAACAGCTTCAATA
. : . : . : . : . : . :
rJMSF024L18+ GATAAAAAGCCAGCTGGTGATTTTACGGGCTCTCTAGAGTCAGCACCACCGCCTTCTGAA
rJMFF035G20+ GATAAAAAGCCAGCTGGTGATTTTACGGGCTCTCTAGAGTCAGCACCACCGCCTTCTGAA
rJMFF041I02+ GATAAAAAGCCAGCTGGTGATTTTACGGGCTCTCTAGAGTCAGCACCACCGCCTTCTGAA
rJMFF040H16+ GATAAAAAGCCAGCTGGTGATTTTACGGGCTCTCTAGAGTCAGCACCACCGCCTTCTGAA
____________________________________________________________
consensus GATAAAAAGCCAGCTGGTGATTTTACGGGCTCTCTAGAGTCAGCACCACCGCCTTCTGAA
. : . : . : . : . : . :
rJMSF024L18+ GAGCCACTTACCCTAAAAAACAAGGCCCCTAGATGGCACGAACAGTTGCAGTGCTGGTGC
rJMFF035G20+ GAGCCACTTACCCTAAAAAACAAGGCCCCTAGATGGCACGAACAGTTGCAGTGCTGGTGC
rJMFF041I02+ GAGCCACTTACCCTAAAAAACAAGGCCCCTAGATGGCACGAACAGTTGCAGTGCTGGTGC
rJMFF040H16+ GAGCCACTTACCCTAAAAAACAAGGCCCCTAGATGGCACGAACAGTTGCAGTGCTGGTGC
____________________________________________________________
consensus GAGCCACTTACCCTAAAAAACAAGGCCCCTAGATGGCACGAACAGTTGCAGTGCTGGTGC
. : . : . : . : . : . :
rJMSF024L18+ CTAAATTTTAAAGGCCGGGTCACAGTGGCTTCGGTTAAAAACTTCCAACTCGTGGCTGCA
rJMFF035G20+ CTAAATTTTAAAGGCCGGGTCACAGTGGCTTCGGTTAAAAACTTCCAACTCGTGGCTGCA
rJMFF041I02+ CTAAATTTTAAAGGCCGGGTCACAGTGGCTTCGGTTAAAAACTTCCAACTCGTGGCTGCA
rJMFF040H16+ CTAAATTTTAAAGGCCGGGTCAAAGTGGCTTCGGTTAAAAACTTCCAACTCGTGGCTGCA
____________________________________________________________
consensus CTAAATTTTAAAGGCCGGGTCACAGTGGCTTCGGTTAAAAACTTCCAACTCGTGGCTGCA
. : . : . : . : . : . :
rJMSF024L18+ GTCGACCCGTCTCACAACATCCCAGCTGCAGAACAGGAGAAAGTGATCCTGCAGTTTGGG
rJMFF035G20+ GTCGACCCGTCTCACAACATCCCAGCTGCAGAACAGGAGAAAGTGATCCTGCAGTTTGGG
rJMFF041I02+ GTCGACCCGTCTCACAACATCCCAGCTGCAGAACAGGAGAAAGTGATCCTGCAGTTTGGG
rJMFF040H16+ GTCGACCCGTCTCACAACATCCCAGCTGCAGAACAGGAGAAAGTGATCCTGCAGTTTGGG
____________________________________________________________
consensus GTCGACCCGTCTCACAACATCCCAGCTGCAGAACAGGAGAAAGTGATCCTGCAGTTTGGG
. : . : . : . : . : . :
rJMSF024L18+ AAAATCGGGAAGGATATCTTCACCATGGACTATCGCTACCCTCTTTCCGCCTTCCAGGCT
rJMFF035G20+ AAAATCGGGAAGGATATCTTCACCATGGACTATCGCTACCCTCTTTCCGCCTTCCAGGCT
rJMFF041I02+ AAAATCGGGAAGGATATCTTCACCATGGACTATCGCTACCCTCTTTCCGCCTTCCAGGCT
rJMFF040H16+ AAAATCGGGAAGGATATCTTCACCATGGACTATCGCTACCCTCTTTCCGCCTTCCAGGCT
____________________________________________________________
consensus AAAATCGGGAAGGATATCTTCACCATGGACTATCGCTACCCTCTTTCCGCCTTCCAGGCT
. : . : . : . : . : . :
rJMSF024L18+ TTTGCCATCTGCTTGAGCAGCTATGACACGAAACTAGCCTGCGAATGATCTTAATGCGGA
rJMFF035G20+ TTTGCCATCTGCTTGAGCAGCTATGACACGAAACTAGCCTGCGAATGATCTTAATGCGGA
rJMFF041I02+ TTTGCCATCTGCTTGAGCAGCTATGACACGAAACTAGCCTGCGAATGATCTTAATGCGGA
rJMFF040H16+ TTTGCCATCTGCTTGAGCAGCTATGACACGAAACTAGCCTGCGAATGATCTTAATGCGGA
____________________________________________________________
consensus TTTGCCATCTGCTTGAGCAGCTATGACACGAAACTAGCCTGCGAATGATCTTAATGCGGA
. : . : . : . : . : . :
rJMSF024L18+ TCGTAAATCCTCATCATCTTTTGTTTTTGTTGCTGGTAACACAGTAGAGTTCTCTGTTTA
rJMFF035G20+ TCGTAAATCCTCATCATCTTTTGTTTTTGTTGCTGGTAACACAGTAGAGTTCTCTGTTTA
rJMFF041I02+ TCGTAAATCCTCATCATCTTTTGTTTTTGTTGCTGGTAACACAGTAGAGTTCTCTGTTTA
rJMFF040H16+ TCGTAAATCCTCATCATCTTTTGTTTTTGTTGCTGGTAACACAGTAGAGTTCTCTGTTTA
____________________________________________________________
consensus TCGTAAATCCTCATCATCTTTTGTTTTTGTTGCTGGTAACACAGTAGAGTTCTCTGTTTA
. : . : . : . : . : . :
rJMSF024L18+ TTCCCTATAAAAGATGCCACTGCCCATTAATTATTGCTGAGAATAATGCTGCTTAGTAGT
rJMFF035G20+ TTCCCTATAAAAGATGCCACTGCCCATTAATTATTGCTGAGAATAATGCTGCTTAGTAGT
rJMFF041I02+ TTCCCTATAAAAGATGCCACTGCCCATTAATTATTGCTGAGAATAATGCTGCTTAGTAGT
rJMFF040H16+ TTCCCTATAAAAGATGCCACTGCCCATTAATTATTGCTGAGAATAATGCTGCTTAGTAGT
____________________________________________________________
consensus TTCCCTATAAAAGATGCCACTGCCCATTAATTATTGCTGAGAATAATGCTGCTTAGTAGT
. : . : . : . : . : . :
rJMSF024L18+ AAGTAGCTTCTTCAGTGTTAGTTGCTCAGATCAAAGGAACTGCTCTTTTACTTCCCTGTT
rJMFF035G20+ AAGTAGCTTCTTCAGTGTTAGTTGCTCAGATCAAAGGAACTGCTCTTTTACTTCCCTGTT
rJMFF041I02+ AAGTAGCTTCTTCAGTGTTAGTTGCTCAGATCAAAGGAACTGCTCTTTTACTTCCCTGTT
rJMFF040H16+ AAGTAGCTTCTTCAGTGTTAGTTGCTCAGATCAAAGGAACTGCTCTTTTACTTCCCTGTT
____________________________________________________________
consensus AAGTAGCTTCTTCAGTGTTAGTTGCTCAGATCAAAGGAACTGCTCTTTTACTTCCCTGTT
. : . : . : . : . : . :
rJMSF024L18+ TATTGT
rJMFF035G20+ TATTGTTGAAATTGAGGAAT
rJMFF041I02+ TATTGTTGAAATTGAGGAATTGAGGCAGAAGCTCAATATA
rJMFF040H16+ TATTGTTGAAATTGAGGAATTGAGGCAGAAGCTCAATATAGAAGACCAAAAGACAAAGAG
____________________________________________________________
consensus TATTGTTGAAATTGAGGAATTGAGGCAGAAGCTCAATATAGAAGACCAAAAGACAAAGAG