Contig 002613:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014J11Sequence442006001 (3)ref|XP_010323878.1|1e-41PREDICTED: protein DGCR14 [Solanum lycopersicum]743002613 (3)ref|XP_006363025.1|1e-121PREDICTED: protein DGCR14-like [Solanum tuberosum]
JMFF029B18Sequence578006001 (3)ref|XP_009762150.1|7e-60PREDICTED: protein DGCR14 [Nicotiana sylvestris]722002613 (3)ref|XP_006363025.1|4e-88PREDICTED: protein DGCR14-like [Solanum tuberosum]
JMFF030C06Sequence567006001 (3)ref|XP_009762150.1|2e-58PREDICTED: protein DGCR14 [Nicotiana sylvestris]673002613 (3)ref|XP_006363025.1|8e-106PREDICTED: protein DGCR14-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF029B18+ TTTCCTTGATAGAA
rJMFF014J11+ TCCTGGAGCTACACNTATTCCTTTCCTTGATAGAA
                      ____________________________________________________________
consensus TCCTGGAGCTACACNTATTCCTTTCCTTGATAGAA
 
. : . : . : . : . : . :
rJMFF029B18+ GTGGGGACAAGGCGAAGAAATATGATCTGGAGGACCTGAGGAAGACACCAAATCAGTTTT
rJMFF014J11+ GTGGGGACAAGGCGAAGAAATATGATCTGGAGGACCTGAGGAAGACACCAAATCAGTTTT
rJMFF030C06+ ACCAAATCAGTTTT
                      ____________________________________________________________
consensus GTGGGGACAAGGCGAAGAAATATGATCTGGAGGACCTGAGGAAGACACCAAATCAGTTTT
 
. : . : . : . : . : . :
rJMFF029B18+ ATGCAGAGTCTGGGAAGAAAGCTGAGAATGGATACAGTTTTGTTATGACTCCTTCCCCCT
rJMFF014J11+ ATGCAGAGTCTGGGAAGAAAGCTGAGAATGGATACAGTTTTGTTATGACTCCTT-CCCCT
rJMFF030C06+ ATGCAGAGTCTGGGAAGAAAGCTGAGAATGGATACAGTTTTGTTATGACTCCTT-CCCCT
                      ____________________________________________________________
consensus ATGCAGAGTCTGGGAAGAAAGCTGAGAATGGATACAGTTTTGTTATGACTCCTT-CCCCT
 
. : . : . : . : . : . :
rJMFF029B18+ GCACCAGGTGTGGATGAGTCCCCTTTTATTACATGGGGTGAAATTGAAGGGACTCCATTG
rJMFF014J11+ GCACCAGGTGTGGATGAGTCCCCTTTTATTACATGGGGTGAAATTGAAGGGACTCCATTG
rJMFF030C06+ GCACCAGGTGTGGATGAGTCCCCTTTTATTACATGGGGTGAAATTGAAGGGACTCCATTG
                      ____________________________________________________________
consensus GCACCAGGTGTGGATGAGTCCCCTTTTATTACATGGGGTGAAATTGAAGGGACTCCATTG
 
. : . : . : . : . : . :
rJMFF029B18+ AGGTTGGAACCAGAAGACACTCCAGTTGATATTGGGGGTAATGGAGAGGGGCCTCACTAT
rJMFF014J11+ AGGTTGGAACCAGAAGACACTCCAGTTGATATTGGGGGTAATGGAGAGGGGCCTCACTAT
rJMFF030C06+ AGGTTGGAACCAGAAGACACTCCAGTTGATATTGGGGGTAATGGAGAGGGGCCTCACTAT
                      ____________________________________________________________
consensus AGGTTGGAACCAGAAGACACTCCAGTTGATATTGGGGGTAATGGAGAGGGGCCTCACTAT
 
. : . : . : . : . : . :
rJMFF029B18+ AACATACCAATGCCACCTTCCAGAGATATCAAGGCCCATTCTTTATCTCGGGAAGCTTCC
rJMFF014J11+ AACATACCAATGCCACCTTCCAGAGATATCAAGGCCCATTCTTTATCTCGGGAAGCTTCC
rJMFF030C06+ AACATACCAATGCCACCTTCCAGAGATATCAAGGCCCATTCTTTATCTCGGGAAGCTTCC
                      ____________________________________________________________
consensus AACATACCAATGCCACCTTCCAGAGATATCAAGGCCCATTCTTTATCTCGGGAAGCTTCC
 
. : . : . : . : . : . :
rJMFF029B18+ CGTAAACTTAGAGAGAGGTCAAAGATGTTTCAGAAACCACCACTGCCCTCACCAGTTCGA
rJMFF014J11+ CGTAAACTTAGAGAGAGGTCAAAGATGTTTCAGAAACCACCACTGCCCTCACCAGTTCGA
rJMFF030C06+ CGTAAACTTAGAGAGAGGTCAAAGATGTTTCAGAAACCACCACTGCCCTCACCAGTTCGA
                      ____________________________________________________________
consensus CGTAAACTTAGAGAGAGGTCAAAGATGTTTCAGAAACCACCACTGCCCTCACCAGTTCGA
 
. : . : . : . : . : . :
rJMFF029B18+ GGGGGAAGTGCTAGTCCAAGTGCACGTACTCTATCCCCAGCTGCACAGAAGTTTGTGAGG
rJMFF014J11+ GGGGGAAGTGCTAGTCCAAGTGCACGTACTCTATCCCCAGCTGCACAGAAGTTTGTGAGG
rJMFF030C06+ GGGGGAAGTGCTAGTCCAAGTGCACGTACTCTATCCCCAGCTGCACAGAAGTTTGTGAGG
                      ____________________________________________________________
consensus GGGGGAAGTGCTAGTCCAAGTGCACGTACTCTATCCCCAGCTGCACAGAAGTTTGTGAGG
 
. : . : . : . : . : . :
rJMFF029B18+ AATGCTATTGCCAAGTCTTCTCGCTCTTTAGATGAATCTCTAAGGGCTAGTTATCGTGGC
rJMFF014J11+ AATGCTATTGCCAAGTCTTCTCGCTCTTTAGATGAATCTCTAAGGGCTAGTTATCGTGGC
rJMFF030C06+ AATGCTATTGCCAAGTCTTCTCGCTCTTTAGATGAATCTCTAAGGGCTAGTTATCGTGGC
                      ____________________________________________________________
consensus AATGCTATTGCCAAGTCTTCTCGCTCTTTAGATGAATCTCTAAGGGCTAGTTATCGTGGC
 
. : . : . : . : . : . :
rJMFF029B18+ TCAAGTCCTGGTTTGAGCACTCCTAAAGCTGGTAGGAGTATGTCAAGGTTAGGAAGAGAC
rJMFF014J11+ TCAAGTCCTGGTTTGAGCACTCCTAAAGCTGGTAGGAGTATGTCAAGGTTAGGAAGAGAC
rJMFF030C06+ TCAAGTCCTGGTTTGAGCACTCCTAAAGCTGGTAGGAGTATGTCAAGGTTAGGAAGAGAC
                      ____________________________________________________________
consensus TCAAGTCCTGGTTTGAGCACTCCTAAAGCTGGTAGGAGTATGTCAAGGTTAGGAAGAGAC
 
. : . : . : . : . : . :
rJMFF029B18+ AGTAGTCTGGCTTCCAGGTCACCTTCTGTTAGAGAGGGGTCTAATCCTCCTTGGTAACTG
rJMFF014J11+ AGTAGTCTGGCTTCCAGGTCACCTTCTGTTAGAGAGGGGTCTAATCCTCCTTGGTAACTG
rJMFF030C06+ AGTAGTCTGGCTTCCAGGTCACCTTCTGTTAGAGAGGGGTCTAATCCTCCTTGGTAACTG
                      ____________________________________________________________
consensus AGTAGTCTGGCTTCCAGGTCACCTTCTGTTAGAGAGGGGTCTAATCCTCCTTGGTAACTG
 
. : . : . : . : . : . :
rJMFF029B18+ TATGCCTTATGTACTAATCCAGCAATTTCCTTCAGACTGTATTATAGTTTGCCTTACTTG
rJMFF014J11+ TATGCCTTATGTACTAATCCAGCAATTTCCTTCAGACTGTATTATAGTTTGCCTTACTTG
rJMFF030C06+ TATGCCTTATGTACTAATCCAGCAATTTCCTTCAGACTGTATTATAGTTTGCCTTACTTG
                      ____________________________________________________________
consensus TATGCCTTATGTACTAATCCAGCAATTTCCTTCAGACTGTATTATAGTTTGCCTTACTTG
 
. : . : . : . : . : . :
rJMFF029B18+ CAACTTCAATGGTTATGAAGTTTGAAACATGTTAGTTTTATTTCATAA
rJMFF014J11+ CAACTTCAATGGTTATGAAGTTTGAAACATGTTAGTTTTATTTCATAA
rJMFF030C06+ CAACTTCAATGGTTATGAAGTTTGAAACATGTTAGTTTTATTTCATAAAAGTTGTATTGA
                      ____________________________________________________________
consensus CAACTTCAATGGTTATGAAGTTTGAAACATGTTAGTTTTATTTCATAAAAGTTGTATTGA