Contig 002584:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005P06Sequence484003164 (11)gb|ACF17656.1|5e-68putative glutamine synthase 2 [Capsicum annuum]717002584 (9)ref|XP_004167630.1|1e-80PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like, partial [Cucu
JMFF010I10Sequence598003164 (11)gb|ACF17656.1|1e-92putative glutamine synthase 2 [Capsicum annuum]735002584 (9)ref|XP_011071523.1|4e-112PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like [Sesamum indic
JMFF022F17Sequence589003164 (11)gb|ACF17656.1|2e-88putative glutamine synthase 2 [Capsicum annuum]773002584 (9)ref|XP_011071523.1|5e-113PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like [Sesamum indic
JMFF035E19Sequence599003164 (11)gb|ACF17656.1|1e-92putative glutamine synthase 2 [Capsicum annuum]756002584 (9)ref|XP_011071523.1|2e-125PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like [Sesamum indic
JMFF048K15Sequence482003164 (11)gb|ACF17656.1|5e-62putative glutamine synthase 2 [Capsicum annuum]522002584 (9)ref|XP_004167630.1|8e-53PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like, partial [Cucu
JMFF051K07Sequence595003164 (11)gb|ACF17656.1|7e-84putative glutamine synthase 2 [Capsicum annuum]630002584 (9)ref|XP_004167630.1|5e-72PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like, partial [Cucu
JMFN042F04Sequence186002584 (9)ref|XP_010450398.1|1e-30PREDICTED: glutamine synthetase, chloroplastic/mitochondrial-like [Camelina sat
JMSF018O14Sequence497003164 (11)gb|ACF17656.1|1e-64putative glutamine synthase 2 [Capsicum annuum]741002584 (9)ref|XP_011071523.1|4e-98PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like [Sesamum indic
JMSF028E22Sequence647003164 (11)gb|ACF17656.1|3e-86putative glutamine synthase 2 [Capsicum annuum]673002584 (9)ref|XP_011071523.1|3e-100PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like [Sesamum indic

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF035E19+ GTCGTTTGGACGTGATATATCAGACGCTCACTAC
                      ____________________________________________________________
consensus GTCGTTTGGACGTGATATATCAGACGCTCACTAC
 
. : . : . : . : . : . :
rJMFF035E19+ AAGGCCTGCTTATATGCTGGAATTAACATCAGTGGTACCAATGGGGAGGTTATGCCTGGC
rJMFF010I10+ GCTTATATGCTGGAATTAACATCAGTGGTACCAATGGGGAGGTTATGCCTGGC
rJMSF028E22+ GC
rJMFF022F17+ GCTTATATGCTGGAATTAACATCAGTGGTACCAATGGGGAGGTTATGCCTGGC
                      ____________________________________________________________
consensus AAGGCCTGCTTATATGCTGGAATTAACATCAGTGGTACCAATGGGGAGGTTATGCCTGGC
 
. : . : . : . : . : . :
rJMFF035E19+ CAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAGGCTGGAGACCATATCTGGTGT
rJMFF010I10+ CAGTGGGAATTCCAAGTAGGTCNTAGTGTGGGAATTGAGGCTGGAGACCATATCTGGTGT
rJMSF028E22+ CAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAGGCTGGAGACCATATCTGGTGT
rJMSF018O14+ GAATTCCAAGTAGGTCCTAGTGTGGGAATTGAGGCTGGAGACCATATCTGGTGT
rJMFF005P06+ GT
rJMFF022F17+ CAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAGGCTGGAGACCATATCTGGTGT
                      ____________________________________________________________
consensus CAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAGGCTGGAGACCATATCTGGTGT
 
. : . : . : . : . : . :
rJMFF035E19+ GCTAGATACATTCTTGAGAGAATTACTGAACAAGCTGGAGTTGTTCTCTCCCTTGATCCA
rJMFF010I10+ GCTAGATACATTCTTGAGAGAATTACTGAACAAGCTGGAGTTGTTCTCTCCCTTGATCCA
rJMSF028E22+ GCTAGATACATTCTTGAGAGAATTACTGAACAAGCTGGAGTTGTTCTCTCCCTTGATCCA
rJMSF018O14+ GCTAGATACATTCTTGAGAGAATTACTGAACAAGCTGGAGTTGTTCTCTCCCTTGATCCA
rJMFF005P06+ GCTAGATACATTCTNGAGAGAATTACTGANCAAGCTGGAGTTGTTCTCTCCCTTGATCCA
rJMFF051K07+ GATCCA
rJMFF022F17+ GCTAGATACATTCTTGAGAGAATTACTGAACAAGCTGGAGTTGTTCTCTCCCTTGATCCA
                      ____________________________________________________________
consensus GCTAGATACATTCTTGAGAGAATTACTGAACAAGCTGGAGTTGTTCTCTCCCTTGATCCA
 
. : . : . : . : . : . :
rJMFF035E19+ AAGCCAATTGAGGGTGACTGGAATGGTGCAGGATGCCACACCAATTACAGTACAAAGAGT
rJMFF010I10+ AAGCCAATTGAGGGTGACTGGAATGGTGCAGGATGCCACACCAATTACAGTACAAAGAGT
rJMSF028E22+ AAGCCAATTGAGGGTGACTGGAATGGTGCAGGATGCCACACCAATTACAGTACAAAGAGT
rJMSF018O14+ AAGCCAATTGAGGGTGACTGGAATGGTGCAGGATGCCACACCAATTACAGTACAAAGAGT
rJMFF005P06+ AAGCCAATTGAGGGTGACTGGAATGGTGCAGGATGCCACACCAATTACAGTACAAAGAGT
JMFN042F04- ATTGAGGGTGACTGGAATGGTGCAGGATGCCACACCAATTACAGTACAAAGAGT
rJMFF051K07+ AAGCCAATTGAGGGTGACTGGAATGGTGCAGGATGCCACACCAATTACAGTACAAAGAGT
rJMFF022F17+ AAGCCAATTGAGGGTGACTGGAATGGTGCAGGATGCCACACCAATTACAGTACAAAGAGT
                      ____________________________________________________________
consensus AAGCCAATTGAGGGTGACTGGAATGGTGCAGGATGCCACACCAATTACAGTACAAAGAGT
 
. : . : . : . : . : . :
rJMFF035E19+ ATGCGAGATGAGGGGGGTTTTGAGGTGATCAAGAAAGCAATTTTGAACCTCTCTCTTCGC
rJMFF010I10+ ATGCGAGATGAGGGGGGTTTTGAGGTGATCAAGAAAGCAATTTTGAACCTCTCTCTTCGC
rJMSF028E22+ ATGCGAGATGAGGGGGGTTTTGAGGTGATCAAGAAAGCAATTTTGAACCTCTCTCTTCGC
rJMSF018O14+ ATGCGAGATGAGGGGGGTTTTGAGGTGATCAAGAAAGCAATTTTGAACCTCTCTCTTCGC
rJMFF048K15+ GCGAGATGAGGGGGGTTTTGAGGTGATCAAGAAAGCAATTTTGAACCTCTCTCTTCGC
rJMFF005P06+ ATGCGAGATGAGGGGGGTTTTGAGGTGATCAAGAAAGCAGTTTTGAACCTCTCTCTTCGC
JMFN042F04- ATGCGAGATGAGGGGGGTTTTGAGGTGATCAAGAAAGCAATTTCGAACCTCTCTCTTCCC
rJMFF051K07+ ATGCGAGATGAGGGGGGTTTTGAGGTGATCAAGAAAGCAATTTTGAACCTCTCTCTTCGC
rJMFF022F17+ ATGCGAGATGAGGGGGGTTTTGAGGTGATCAAGAAAGCAATTTTGAACCTCTCTCTTCGC
                      ____________________________________________________________
consensus ATGCGAGATGAGGGGGGTTTTGAGGTGATCAAGAAAGCAATTTTGAACCTCTCTCTTCGC
 
. : . : . : . : . : . :
rJMFF035E19+ CATAAGGAGCACATAAGTGCTTATGGAGAAGGAAATGAGAGGAGGCTGACGGGAAAGCAT
rJMFF010I10+ CATAAGGAGCACATAAGTGCTTATGGAGAAGGAAATGAGAGGAGGCTGACGGGAAAGCAT
rJMSF028E22+ CATAAGGAGCACATAAGTGCTTATGGAGAAGGAAATGAGAGGAGGCTGACGGGAAAGCAT
rJMSF018O14+ CATAAGGAGCACATAAGTGCTTATGGAGAAGGAAATGAGAGGAGGCTGACGGGAAAGCAT
rJMFF048K15+ CATAAGGAGCACATAAGTGCTTATGGAGAAGGAAATGAGAGGAGGCTGACGGGAAAGCAT
rJMFF005P06+ CATAAGGAGCACATAAGTGCTTATGGAGAAGGAAATGAGAGGAGGCTGACGGGAAAGCAT
JMFN042F04- CATCCGGAGCACATAAGTGCTTATGGAGAAGGAAATGAGAAGAGGCTGCAGGGCAAACAT
rJMFF051K07+ CATAAGGAGCACATAAGTGCTTATGGAGAAGGAAATGAGAGGAGGCTGACGGGAAAGCAT
rJMFF022F17+ CATAAGGAGCACATAAGTGCTTATGGAGAAGGAAATGAGAGGAGGCTGACGGGAAAGCAT
                      ____________________________________________________________
consensus CATAAGGAGCACATAAGTGCTTATGGAGAAGGAAATGAGAGGAGGCTGACGGGAAAGCAT
 
. : . : . : . : . : . :
rJMFF035E19+ GAAACTGCCAGTATTAACACATTTTCTTGGGGAGTAGCTAATCGTGGTTGTTCAATTCGT
rJMFF010I10+ GAAACTGCCAGTATTAACACATTTTCTTGGGGAGTAGCTAATCGTGGTTGTTCAATTCGT
rJMSF028E22+ GAAACTGCCAGTATTAACACATTTTCTTGGGGAGTAGCTAATCGTGGTTGTTCAATTCGT
rJMSF018O14+ GAAACTGCCAGTATTAACACATTTTCTTGGGGAGTAGCTAATCGTGGTTGTTCAATTCGT
rJMFF048K15+ GAAACTGCCAGTATTAACACATTTTCTTGGGGAGTAGCTAATCGTGGTTGTTCAATTCGT
rJMFF005P06+ GAANCTGCCAGTATTAACACATTTTCTTGGGGAGTAGNTAATCGTGGTTGTTCAATTCGT
JMFN042F04- GAAACTGCCA
rJMFF051K07+ GAAACTGCCAGTATTAACACATTTTCTTGGGGAGTAGCTAATCGTGGTTGTTCAATTCGT
rJMFF022F17+ GAAACTGCCAGTATTAACACATTTTCTTGGGGAGTAGCTAATCGTGGTTGTTCAATTCGT
                      ____________________________________________________________
consensus GAAACTGCCAGTATTAACACATTTTCTTGGGGAGTAGCTAATCGTGGTTGTTCAATTCGT
 
. : . : . : . : . : . :
rJMFF035E19+ GTGGGCCGTGATACAGAGAAGAATGGCAAAGGTTATTTGGAGGACCGGCGCCCTGCTTCA
rJMFF010I10+ GTGGGCCGTGATACAGAGAAGAATGGCAAAGGTTATTTGGAGGACCGGCGCCCTGCTTCA
rJMSF028E22+ GTGGGCCGTGATACAGAGAAGAATGGCAAAGGTTATTTGGAGGACCGGCGCCCTGCTTCA
rJMSF018O14+ GTGGGCCGTGATACAGAGAAGAATGGCAAAGGTTATTTGGAGGACCGGCGCCCTGCTTCA
rJMFF048K15+ GTGGGCCGTGATACAGAGAAGAATGGCAAAGGTTATTTGGAGGACCGGCGCCCTGCTTCA
rJMFF005P06+ GTGGGCCGTGATACAGAGAAGAATGGCAAAGGTTATTTGGAGGACCGGCGCCNTGCTTCA
rJMFF051K07+ GTGGGCCGTGATACAGAGAAGAATGGCAAAGGTTATTTGGAGGACCGGCGCCCTGCTTCA
rJMFF022F17+ GTGGGCCGTGATACAGAGAAGAATGGCAAAGGTTATTTGGAGGACCGGCGCCCTGCTTCA
                      ____________________________________________________________
consensus GTGGGCCGTGATACAGAGAAGAATGGCAAAGGTTATTTGGAGGACCGGCGCCCTGCTTCA
 
. : . : . : . : . : . :
rJMFF035E19+ AACATGGATCCATATGTGGTGACTGCATTACTTGCTGAAACTACCTTACTGTGGGAACCC
rJMFF010I10+ AACATGGATCCATATGTGGTGACTGCATTACTTGCTGAAACTACCTTACTGTGGGAACCC
rJMSF028E22+ AACATGGATCCATATGTGGTGACTGCATTACTTGCTGAAACTACCTTACTGTGGGAACCC
rJMSF018O14+ AACATGGATCCATATGTGGTGACTGCATTACTTGCTGAAACTACCTTACTGTGGGAACCC
rJMFF048K15+ AACATGGATCCATATGTGGTGACTGCATTACTTGCTGAAACTACCTTACTGTGGGAACCC
rJMFF005P06+ AACATGGATCCATATGTGGTGACTGCATTACTTGCTGAAACTACCTTACTGTGGGAACCC
rJMFF051K07+ AACATGGATCCATATGTGGTGACTGCATTACTTGCTGAAACTACCTTACTGTGGGAACCC
rJMFF022F17+ AACATGGATCCATATGTGGTGACTGCATTACTTGCTGAAACTACCTTACTGTGGGAACCC
                      ____________________________________________________________
consensus AACATGGATCCATATGTGGTGACTGCATTACTTGCTGAAACTACCTTACTGTGGGAACCC
 
. : . : . : . : . : . :
rJMFF035E19+ ACGCTTGAGGCCGAAGCTCTTGCTGCCCAGAAGGTGACATTGAAGGTTTGAAACATCATA
rJMFF010I10+ ACGCTTGAGGCCGAAGCTCTTGCTGCCCAGAAGGTGACATTGAAGGTTTGAAACATCATA
rJMSF028E22+ ACGCTTGAGGCCGAAGCTCTTGCTGCCCAGAAGGTGACATTGAAGGTTTGAAACATCATA
rJMSF018O14+ ACGCTTGAGGCCGAAGCTCTTGCTGCCCAGAAGGTGACATTGAAGGTTTGAAA
rJMFF048K15+ ACGCTTGAGGCCGAAGCTCTTGCTGCCCAGAAGGTGACATTGAAGGTTTGAAACATCATA
rJMFF005P06+ ACGCTTGAGGCCGAAGCTCTTGCTGCCCAGAAGGTGACATTGAAGGTTTGAAA
rJMFF051K07+ ACGCTTGAGGCCGAAGCTCTTGCTGCCCAGAAGGTGACATTGAAGGTTTGAAA
rJMFF022F17+ ACGCTTGAGGCCGAAGCTCTTGCTGCCCAGAAGGTGACATTGAAGGTTTGAAACATCATA
                      ____________________________________________________________
consensus ACGCTTGAGGCCGAAGCTCTTGCTGCCCAGAAGGTGACATTGAAGGTTTGAAACATCATA
 
. : . : . : . : . : . :
rJMFF035E19+ TTTGAAGTGAATAATGAAACCCTTCAAAGATTCATCACTACTGCTAAGCATTTGTACTAT
rJMFF010I10+ TTTGAAGTGAATAATGAAACCCTTCAAAGATTCATCACTACTGCTAAGCATTTGTACTAT
rJMSF028E22+ TTTGAAGTGAATAATGAAACCCTTCAAAGATTCATCACTACTGCTAAGCATTTGTACTAT
rJMFF048K15+ TTTGAAGTGAATAATGAAACCCTTCAAAGATTCATCACTACTGCTAAGCATTTGTACTAT
rJMFF022F17+ TTTGAAGTGAATAATGAAACCCTTCAAAGATTCATCACTACTGCTAAGCATTTGTACTAT
                      ____________________________________________________________
consensus TTTGAAGTGAATAATGAAACCCTTCAAAGATTCATCACTACTGCTAAGCATTTGTACTAT
 
. : . : . : . : . : . :
rJMFF035E19+ TTTCTTTGATTCCTTTCTGTGACTTAAGTACCTTAGCTTGTAACATGAATATTTTTTATG
rJMFF010I10+ TTTCTTTGATTCCTTTCTGTGACTTAAGTACCTTAGCTTGTAACATGAATATTTTTTATG
rJMSF028E22+ TTTCTTTGATTCCTTTCTGTGACTTAAGTACCTTAGCTTGTAACATGAATATTTTTTATG
rJMFF048K15+ TTTCTTTGATTCCTTTCTGTGACTTAAGTACCTTAGCTTGTAACATGAATATTTTTTATG
rJMFF022F17+ TTTCTTTGATTCCTTTCTGTGACTTAAGTACCTTAGCTTGTAACATGAATATTTTTTATG
                      ____________________________________________________________
consensus TTTCTTTGATTCCTTTCTGTGACTTAAGTACCTTAGCTTGTAACATGAATATTTTTTATG
 
. : . : . : . : . : . :
rJMFF035E19+ GT
rJMFF010I10+ GTTTGAACATTATCTCTTGCTG
rJMSF028E22+ GTTTGAACATT
rJMFF048K15+ GTTTGAACATTATCTCTTGCTGTCAGTGGTCACTGACTGCATCC
rJMFF022F17+ GTTTGAACATTATCTCTTGCTGTCAGTGGTCACTGACTGCATCCTTAGAAGTGGCAATTA
                      ____________________________________________________________
consensus GTTTGAACATTATCTCTTGCTGTCAGTGGTCACTGACTGCATCCTTAGAAGTGGCAATTA