| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008M01 | Sequence | 495 | 005965 (9) | ref|XP_009780936.1| | 5e-81 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like [Nico | 654 | 002581 (9) | ref|XP_002540513.1| | 6e-89 | glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis] gb|EEF2187 |
| JMFF022A03 | Sequence | 472 | 005965 (9) | ref|XP_009780936.1| | 8e-67 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like [Nico | 771 | 002581 (9) | ref|XP_011034836.1| | 5e-107 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic isoform X1 |
| JMFF024H10 | Sequence | 560 | 005965 (9) | ref|XP_009780936.1| | 3e-81 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like [Nico | 757 | 002581 (9) | ref|XP_011034836.1| | 1e-111 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic isoform X1 |
| JMFF039B20 | Sequence | 678 | 002581 (9) | ref|XP_011034836.1| | 2e-90 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic isoform X1 | |||||
| JMSF002P10 | Sequence | 270 | 005965 (9) | ref|XP_009780936.1| | 1e-26 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like [Nico | 747 | 002581 (9) | ref|XP_011034836.1| | 2e-105 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic isoform X1 |
| JMSF008L11 | Sequence | 377 | 005965 (9) | ref|XP_009780936.1| | 3e-53 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like [Nico | 761 | 002581 (9) | ref|XP_011034836.1| | 1e-89 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic isoform X1 |
| JMSF021N16 | Sequence | 636 | 005965 (9) | ref|XP_009780936.1| | 7e-115 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like [Nico | 752 | 002581 (9) | ref|XP_011034836.1| | 9e-118 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic isoform X1 |
| JMSF034G15 | Sequence | 673 | 005965 (9) | ref|XP_009780936.1| | 1e-124 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like [Nico | 751 | 002581 (9) | ref|XP_011034836.1| | 2e-117 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic isoform X1 |
| JMSF038B20 | Sequence | 661 | 005965 (9) | ref|XP_009780936.1| | 9e-125 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like [Nico | 833 | 002581 (9) | ref|XP_011034836.1| | 1e-107 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic isoform X1 |
This contig is upended
. : . : . : . : . : . :
rJMFF024H10+ CAAACTGCTTGGCTCCC-TTTGTA
rJMSF021N16+ CGTAAGCAATGCTTCTTGCACCACAAACTGCTTGGCTCCC-TTTGTA
rJMSF034G15+ ATCGTAAGCNATGCTTCTTGCACCACAAACTGCTTGGCTCCC-TTTGTA
rJMSF008L11+ GTAAGCAATGCTTCTTGCACCACAAACTGCTTGGCTCCC-TTTGTA
rJMSF002P10+ ATCGTGAGCAATGCTTCNTGCACCACAAACTGCTTGGCTCCC--TTGTA
rJMSF038B20+ ATCGTAAGCAATGCTTCTTGCACCACAAACTGCTTGGCTCCCCTTTGTA
rJMFF022A03+ ACATCGTAAGCAATGCTTCTTGCACCACAAACTGCTTGGCTCCCCTTTGTA
____________________________________________________________
consensus ACATCGTAAGCAATGCTTCTTGCACCACAAACTGCTTGGCTCCC-TTTGTA
. : . : . : . : . : . :
rJMFF024H10+ AAGGTCATGGATGAGGAATTTGGTATTGTCAAGGGAACAATGACAACCACTCACTCTTAC
rJMFF039B20+ TTAC
rJMSF021N16+ AAGGTCATGGATGAGGAATTTGGTATTGTCAAGGGAACAATGACAACCACTCACTCTTAC
rJMSF034G15+ AAGGTCATGGATGAGGAATTTGGTATTGTCAAGGGAACAATGACAACCACTCACTCTTAC
rJMSF008L11+ AAGGTCATGGATGAGGAATTTGGTATTGTCAAGGGAACAATGACAACCACTCACTCTTAC
rJMSF002P10+ AAGGTCATGGATGAGGAATTTGGTATTGTCAAGGGAACAATGACAACCACTCACTCTTAC
rJMSF038B20+ AAGGTCATGGATGAGGAATTTGGTATTGTCAAGGGAACAATGACAACCACTCACTCTTAC
rJMFF022A03+ AAGGTCATGGATGAGGAATTTGGTATTGTCAAGGGAACAATGACAACCACTCACTCTTAC
____________________________________________________________
consensus AAGGTCATGGATGAGGAATTTGGTATTGTCAAGGGAACAATGACAACCACTCACTCTTAC
. : . : . : . : . : . :
rJMFF024H10+ ACCGGTGATCAGAGGCTGTTGGATGCATCACACAGGGACTTGAGAAGGGCAAGAGCTGCA
rJMFF039B20+ ACCGGTGATCAGAGGCTGTTGGATGCATCACACAGGGACTTGAGAAGGGCAAGAGCTGCA
rJMSF021N16+ ACCGGTGATCAGAGGCTGTTGGATGCATCACACAGGGACTTGAGAAGGGCAAGAGCTGCA
rJMSF034G15+ ACCGGTGATCAGAGGCTGTTGGATGCATCACACAGGGACTTGAGAAGGGCAAGAGCTGCA
rJMSF008L11+ ACCGGTGATCAGAGGCTGTTGGATGCATCACACAGGGACTTGAGAAGGGCAAGAGCTGCA
rJMSF002P10+ ACCGGTGATCAGAGGCTGTTGGATGCATCACACAGGGACTTGAGAAGGGCAAGAGCTGCA
rJMFF008M01+ CGGTGATCAGAGGCTGTTGGATGCATCACACAGGGACTTGAGAAGGGCAAGAGCTGCA
rJMSF038B20+ ACCGGTGATCAGAGGCTGTTGGATGCATCACACAGGGACTTGAGAAGGGCAAGAGCTGCA
rJMFF022A03+ ACCGGTGATCAGAGGCTGTTGGATGCATCACACAGGGACTTGAGAAGGGCAAGAGCTGCA
____________________________________________________________
consensus ACCGGTGATCAGAGGCTGTTGGATGCATCACACAGGGACTTGAGAAGGGCAAGAGCTGCA
. : . : . : . : . : . :
rJMFF024H10+ GCATTGAACATAGTCCCAACCAGCACTGGTGCTGCCAAAGCAGTGTCTCTGGTGCTACCC
rJMFF039B20+ GCATTGAACATAGTCCCAACCAGCACTGGTGCTGCCAAAGCAGTGTCTCTGGTGCTACCC
rJMSF021N16+ GCATTGAACATAGTCCCAACCAGCACTGGTGCTGCCAAAGCAGTGTCTCTGGTGCTACCC
rJMSF034G15+ GCATTGAACATAGTCCCAACCAGCACTGGTGCTGCCAAAGCAGTGTCTCTGGTGCTACCC
rJMSF008L11+ GCATTGAACATAGTCCCAACCAGCACTGGTGCTGCCAAAGCAGTGTCTCTGGTGCTACCC
rJMSF002P10+ GCATTGAACATAGTCCCAACCAGCACTGGTGCTGCCAAAGCAGTGTCTCTGGTGCTACCC
rJMFF008M01+ GCATTGAACATAGTCCCAACCAGCACTGGTGCTGCCAAAGCAGTGTCTCTGGTGCTACCC
rJMSF038B20+ GCATTGAACATAGTCCCAACCAGCACTGGTGCTGCCAAAGCAGTGTCTCTGGTGCTACCC
rJMFF022A03+ GCATTGAACATAGTCCCAACCAGCACTGGTGCTGCCAAAGCAGTGTCTCTGGTGCTACCC
____________________________________________________________
consensus GCATTGAACATAGTCCCAACCAGCACTGGTGCTGCCAAAGCAGTGTCTCTGGTGCTACCC
. : . : . : . : . : . :
rJMFF024H10+ CAGCTGAAGGGCAAGCTCAACGGCATTGCTCTCCGAGTGCCAACGCCTAACGTCTCCGTT
rJMFF039B20+ CAGCTGAAGGGCAAGCTCAACGGCATTGCTCTCCGAGTGCCAACGCCTAACGTCTCCGTT
rJMSF021N16+ CAGCTGAAGGGCAAGCTCAACGGCATTGCTCTCCGAGTGCCAACGCCTAACGTCTCCGTT
rJMSF034G15+ CAGCTGAAGGGCAAGCTCAACGGCATTGCTCTCCGAGTGCCAACGCCTAACGTCTCCGTT
rJMSF008L11+ CAGCTGAAGGGCAAGCTCAACGGCATTGCTCTCCGAGTGCCAACGCCTAACGTCTCCGTT
rJMSF002P10+ CAGCTGAAGGGCAAGCTCAACGGCATTGCTCTCCGAGTGCCAACGCCTAACGTCTCCGTT
rJMFF008M01+ CAGCTGAAGGGCAAGCTCAACGGCATTGCTCTCCGAGTGCCAACGCCTAACGTCTCCGTT
rJMSF038B20+ CAGCTGAAGGGCAAGCTCAACGGCATTGCTCTCCGAGTGCCAACGCCTAACGTCTCCGTT
rJMFF022A03+ CAGNTGAAGGGCAAGCTCAACGGCATTGCTCTCCGAGTGCCAACGCCTAACGTCTCCGTT
____________________________________________________________
consensus CAGCTGAAGGGCAAGCTCAACGGCATTGCTCTCCGAGTGCCAACGCCTAACGTCTCCGTT
. : . : . : . : . : . :
rJMFF024H10+ GTAGACCTCGTGGTCAACGTCCAGAAGAAAGGACTCACCGCGGAAGATGTCAATGCAGCC
rJMFF039B20+ GTAGACCTCGTGGTCAACGTCCAGAAGAAAGGACTCACCGCGGAAGATGTCAATGCAGCC
rJMSF021N16+ GTAGACCTCGTGGTCAACGTCCAGAAGAAAGGACTCACCGCGGAAGATGTCAATGCAGCC
rJMSF034G15+ GTAGACCTCGTGGTCAACGTCCAGAAGAAAGGACTCACCGCGGAAGATGTCAATGCAGCC
rJMSF008L11+ GTAGACCTCGTGGTCAACGTCCAGAAGAAAGGACTCACCGCGGAAGATGTCAATGCAGCC
rJMSF002P10+ GTAGACCTCGTGGTCAACGTCCAGAAGAAAGGACTCACCGCGGAAGATGTCAATGCAGCC
rJMFF008M01+ GTAGACCTCGTGGTCAACGTCCAGAAGAAAGGACTCACCGCGGAAGATGTCAATGCAGCC
rJMSF038B20+ GTAGACCTCGTGGTCAACGTCCAGAAGAAAGGACTCACCGCGGAAGATGTCAATGCAGCC
rJMFF022A03+ GTAGACCTCGTGGTCAACGTCCAGAAGAAAGGACTCACCGCGGAAGATGTCAATGCAGCC
____________________________________________________________
consensus GTAGACCTCGTGGTCAACGTCCAGAAGAAAGGACTCACCGCGGAAGATGTCAATGCAGCC
. : . : . : . : . : . :
rJMFF024H10+ TTCAGAAAGGCGTCCGATGGCCCACTCAAAGGCGTGTTGGATGTCTGTGATGCCCCTCTT
rJMFF039B20+ TTCAGAAAGGCGTCCGATGGCCCACTCAAAGGCGTGTTGGATGTCTGTGATGCCCCTCTT
rJMSF021N16+ TTCAGAAAGGCGTCCGATGGCCCACTCAAAGGCGTGTTGGATGTCTGTGATGCCCCTCTT
rJMSF034G15+ TTCAGAAAGGCGTCCGATGGCCCACTCAAAGGCGTGTTGGATGTCTGTGATGCCCCTCTT
rJMSF008L11+ TTCAGGAAGGCGTCCGATGGCCCACTCAAAGGCGTGTTGGATGTCTGTGATGCCCCTCTT
rJMSF002P10+ TTCAGAAAGGCGTCCGATGGCCCACTCAAAGGCGTGTTGGATGTCTGTGATGCCCCTCTT
rJMFF008M01+ TTCAGAAAGGCGTCCGATGGCCCACTCAAAGGCGTGTTGGATGTCTGTGATGCCCCTCTT
rJMSF038B20+ TTCAGAAAGGCGTCCGATGGCCCACTCAAAGGCGTGTTGGATGTCTGTGATGCCCCTCTT
rJMFF022A03+ TTCAGAAAGGCGTCCGATGGCCCACTCAAAGGCGTGTTGGATGTCTGTGATGCCCCTCTT
____________________________________________________________
consensus TTCAGAAAGGCGTCCGATGGCCCACTCAAAGGCGTGTTGGATGTCTGTGATGCCCCTCTT
. : . : . : . : . : . :
rJMFF024H10+ GTGTCTGTTGATTTCAGATGCAGCGATGTTTCCTCAACCATCGACTCTTCCTTGACCATG
rJMFF039B20+ GTGTCTGTTGATTTCAGATGCAGCGATGTTTCCTCAACCATCGACTCTTCCTTGACCATG
rJMSF021N16+ GTGTCTGTTGATTTCAGATGCAGCGATGTTTCCTCAACCATCGACTCTTCCTTGACCATG
rJMSF034G15+ GTGTCTGTTGATTTCAGATGCAGCGATGTTTCCTCAACCATCGACTCTTCCTTGACCATG
rJMSF008L11+ GTGTCT-TTGATTTCAGATGCAGCGATGTTTCCTCAACCATCGACTCTTCCTTGACCATG
rJMSF002P10+ GTGTCTGTTGATTTCAGATGCAGCGATGTTTCCTCAACCATCGACTCTTCCTTGACCATG
rJMFF008M01+ GTGTCTGTTGATTTCAGATGCAGCGATGTTTCCTCAACCATCGACTCTTCCTTGACCATG
rJMSF038B20+ GTGTCTGTTGATTTCAGATGCAGCGATGTTTCCTCAACCATCGACTCTTCCTTGACCATG
rJMFF022A03+ GTGTCTGTTGATTTCAGATGCAGCGATGTTTCCTCAACCATCGACTCTTCCTTGACCATG
____________________________________________________________
consensus GTGTCTGTTGATTTCAGATGCAGCGATGTTTCCTCAACCATCGACTCTTCCTTGACCATG
. : . : . : . : . : . :
rJMFF024H10+ GTCATGGGAGACGACATGGTCAAGGTCGTCGCCTGGTACGACAATGAGTGGGGATACAGC
rJMFF039B20+ GTCATGGGAGACGACATGGTCAAGGTCGTCGCCTGGTACGACAATGAGTGGGGATACAGC
rJMSF021N16+ GTCATGGGAGACGACATGGTCAAGGTCGTCGCCTGGTACGACAATGAGTGGGGATACAGC
rJMSF034G15+ GTCATGGGAGACGACATGGTCAAGGTCGTCGCCTGGTACGACAATGAGTGGGGATACAGC
rJMSF008L11+ GTCATGGGAGACGACATGGTCAAGGTCGTCGCCTGGTACGACAATGAGTGGGGATACAGC
rJMSF002P10+ GTCATGGGAGACGACATGGTCAAGGTCGTCGCCTGGTACGACAATGAGTGGGGATACAGC
rJMFF008M01+ GTCATGGGAGACGACATGGTCAAGGTCGTCGCCTGGTACGACAATGAGTGGGGATACAGC
rJMSF038B20+ GTCATGGGAGACGACATGGTCAAGGTCGTCGCCTGGTACGACAATGAGTGGGGATACAGC
rJMFF022A03+ GTCATGGGAGACGACATGGTCAAGGTCGTCGCCTGGTACGACAATGAGTGGGGATACAGC
____________________________________________________________
consensus GTCATGGGAGACGACATGGTCAAGGTCGTCGCCTGGTACGACAATGAGTGGGGATACAGC
. : . : . : . : . : . :
rJMFF024H10+ CAACGTGTGGTGGATTTGGCACATCTAGTAGCTAGCAAGTGGCCGGGGGTGGCAGTTGCA
rJMFF039B20+ CAACGTGTGGTGGATTTGGCACATCTAGTAGCTAGCAAGTGGCCGGGGGTGGCAGTTGCA
rJMSF021N16+ CAACGTGTGGTGGATTTGGCACATCTAGTAGCTAGCAAGTGGCCGGGGGTGGCAGTTGCA
rJMSF034G15+ CAACGTGTGGTGGATTTGGCACATCTAGTAGCTAGCAAGTGGCCGGGGGTGGCAGTTGCA
rJMSF008L11+ CAACGTGTGGTGGATTTGGCACATCTAGTAGCTAGCAAGTGGCCGGGGGTGGCAGTTGCA
rJMSF002P10+ CAACGTGTGGTGGATTTGGCACATCTAGTAGCTAGCAAGTGGCCGGTGGTGGCAGTTGCA
rJMFF008M01+ CAACGTGTGGTGGATTTGGCACATCTAGTAGCTAGCAAGTGGCCGGGGGTGGCAGTTGCA
rJMSF038B20+ CAACGTGTGGTGGATTTGGCACATCTAGTAGCTAGCAAGTGGCCGGGGGTGGCAGTTGCA
rJMFF022A03+ CAACGTGTGGTGGATTTGGCACATCTAGTAGCTAGCAAGTGGCCGGGGGTGGCAGTTGCA
____________________________________________________________
consensus CAACGTGTGGTGGATTTGGCACATCTAGTAGCTAGCAAGTGGCCGGGGGTGGCAGTTGCA
. : . : . : . : . : . :
rJMFF024H10+ GGAAGCGGAGACCCTTTGGAGGACTACTGCAAGACAAACCCGGGAGACAAGGAATGCAAA
rJMFF039B20+ GGAAGCGGAGACCCTTTGGAGGACTACTGCAAGACAAACCCGGGAGACAAGGAATGCAAA
rJMSF021N16+ GGAAGCGGAGACCCTTTGGAGGACTACTGCAAGACAAACCCGGGAGACAAGGAATGCAAA
rJMSF034G15+ GGAAGCGGAGACCCTTTGGAGGACTACTGCAAGACAAACCCGGGAGACAAGGAATGCAAA
rJMSF008L11+ GGAAGCGGAGACCCTTTGGAGGACTACTGCAAGACAAACCCGGGAGACAAGGAATGCAAA
rJMSF002P10+ GGAAGCGGAGACCCTTTGGAGGACTACTGCAAGACAAACCCGGGAGACAAGGAATGCAAA
rJMFF008M01+ GGAAGCGGAGACCCTTTGGAGGACTACTGCAAGACAAACCCGGGAGACAAGGAATGCAAA
rJMSF038B20+ GGAAGCGGAGACCCTTTGGAGGACTACTGCAAGACAAACCCGGGAGACAAGGAATGCAAA
rJMFF022A03+ GGAAGCGGAGACCCTTTGGAGGACTACTGCAAGACAAACCCGGGAGACAAGGAATGCAAA
____________________________________________________________
consensus GGAAGCGGAGACCCTTTGGAGGACTACTGCAAGACAAACCCGGGAGACAAGGAATGCAAA
. : . : . : . : . : . :
rJMFF024H10+ GTCT
rJMFF039B20+ GTCT
rJMSF021N16+ GTCTTTGAAGCTTGATTCACCACCAATTTTTTTGGTGAAATCAATGATTTTAGGTGTTAT
rJMSF034G15+ GTCTTTGAAGCTTGATTCACCACCAATTTTTTTGGTGAAATCAATGATTTTAGGTGTTAT
rJMSF008L11+ GTCTTTGAAGCTTGATTCACCACCAATTTTTTTGGTGAAATCAATGATTTTAGGTGTTAT
rJMSF002P10+ GTCTTTGAAGCTTGATTCACCACCAATTTTTTTGGTGAAATCAATGATTTTAGGTGTTAT
rJMFF008M01+ GTCTTTGAAGCTTGATTCACCACCAATTTTTTTGGTGAAATCAATGATTTTAGGTGTTAT
rJMSF038B20+ GTCT
rJMFF022A03+ GTCTTTGAAGCTTGATTCACCACCAATTTTTTTGGTGAAATCAATGATTTTAGGTGTTAT
____________________________________________________________
consensus GTCTTTGAAGCTTGATTCACCACCAATTTTTTTGGTGAAATCAATGATTTTAGGTGTTAT
. : . : . : . : . : . :
rJMSF021N16+ GTTTGAGGGAGATAGTTAATTAAGATAATACTGAAATATGTACACA
rJMSF034G15+ GTTTGAGGGAGATAGTTAATTAAGATAATACTGAAATATGTAC
rJMSF008L11+ GTTTGAGGGAGATAGTTAATTAAGATAATACTGAAATATGTACACATTTCGAAAGTC
rJMSF002P10+ GTTTGAGGGAGATAGTTAATTAAGATAATACTGAAATAT
rJMFF008M01+ GTTTGAGGGAGATAGTTAATTAAGATAATACTGAAATATGTACACATTTCGAAAGT
rJMFF022A03+ GTTTGAGGGAGATAGTTAATTAAGATAATACTGAAATATGTACACATTTCGAAAGTCTAA
____________________________________________________________
consensus GTTTGAGGGAGATAGTTAATTAAGATAATACTGAAATATGTACACATTTCGAAAGTCTAA