Contig 002580:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021O18Sequence403000995 (9)gb|KJB37865.1|3e-64hypothetical protein B456_006G223600 [Gossypium raimondii]583002580 (2)ref|NP_001051683.1|1e-55Os03g0815200 [Oryza sativa Japonica Group] sp|Q75HE6.1|MTHR_ORYSJ RecName: Full=
JMFF028D20Sequence559000995 (9)ref|XP_009785052.1|1e-98PREDICTED: probable methylenetetrahydrofolate reductase [Nicotiana sylvestris]645002580 (2)ref|XP_008457198.1|4e-71PREDICTED: probable methylenetetrahydrofolate reductase [Cucumis melo] ref|XP_0

Alignment

This contig is upended


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rJMFF028D20+                         TGCAGATTTAATCATTACTCAACTCTTCTATGACACTGACTGTTT
                      ____________________________________________________________
consensus                            TGCAGATTTAATCATTACTCAACTCTTCTATGACACTGACTGTTT
 
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rJMFF028D20+          CCTCAAATTTGTGAATGATTGTCGTCAAATTGGAATAACATGCCCCATTGTTCCTGGTAT
rJMFF021O18+                              GTCGTCAAATTGGAATAACATGCCCCATTGTTCCTGGTAT
                      ____________________________________________________________
consensus             CCTCAAATTTGTGAATGATTGTCGTCAAATTGGAATAACATGCCCCATTGTTCCTGGTAT
 
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rJMFF028D20+          TATGCCCATTAAAGATTACAGGGGCTTCGTCAGGTGGACTGGCGTATGCAAAACCAAGGT
rJMFF021O18+          TATGCCCATTAAAGATTACAGGGGCTTCGTCAGGTGGACTGGCGTATGCAAAACCAAGGT
                      ____________________________________________________________
consensus             TATGCCCATTAAAGATTACAGGGGCTTCGTCAGGTGGACTGGCGTATGCAAAACCAAGGT
 
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rJMFF028D20+          TCCCCCTGAGGTTATGGCTGCTCTGGAACCAATTAAGGACAATGAAGAAGCTATAAGAGC
rJMFF021O18+          TCCCCCTGAGGTTATGGCTGCTCTGGAACCAATTAAGGACAATGAAGAAGCTATAAGAGC
                      ____________________________________________________________
consensus             TCCCCCTGAGGTTATGGCTGCTCTGGAACCAATTAAGGACAATGAAGAAGCTATAAGAGC
 
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rJMFF028D20+          TTATGGAGTTCACCTAGGAACTGAGATGTGCAAGAAGATTATGGCGAGTGGGATTAAGAC
rJMFF021O18+          TTATGGAGTTCACCTAGGAACTGAGATGTGCAAGAAGATTATGGCGAGTGGGATTAAGAC
                      ____________________________________________________________
consensus             TTATGGAGTTCACCTAGGAACTGAGATGTGCAAGAAGATTATGGCGAGTGGGATTAAGAC
 
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rJMFF028D20+          ATTACATCTTTATACATTAAATAACGAGAAATCTGCATTGGCAATATTGATGAATCTTGG
rJMFF021O18+          ATTACATCTTTATACATTAAATAACGAGAAATCTGCATTGGCAATATTGATGAATCTTGG
                      ____________________________________________________________
consensus             ATTACATCTTTATACATTAAATAACGAGAAATCTGCATTGGCAATATTGATGAATCTTGG
 
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rJMFF028D20+          ATTAATAGAGGAGTCCAGGGTTTCAAGGTCATTACCTTGTGTAAAGGAAGATGTCTTATC
rJMFF021O18+          ATTAATAGAGGAGTCCAGGGTTTCAAGGTCATTACCTTGTGTAAAGGAAGATGTCTTATC
                      ____________________________________________________________
consensus             ATTAATAGAGGAGTCCAGGGTTTCAAGGTCATTACCTTGTGTAAAGGAAGATGTCTTATC
 
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rJMFF028D20+          CGCACCCAAAACGAAGGATGCAAATCAGGCAAATCAGAATACACATGGGAGTGGGAATTG
rJMFF021O18+          CGCACCCAAAACGAAGGATGCAAATCAGGCAAATCAGAATACACATGGGAGTGGGAATTG
                      ____________________________________________________________
consensus             CGCACCCAAAACGAAGGATGCAAATCAGGCAAATCAGAATACACATGGGAGTGGGAATTG
 
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rJMFF028D20+          ACAGAAATAAAATCATCTCAATCATCTCCTTTTCTATAATTAGTTATTTTCTAGTCTAGC
rJMFF021O18+          ACAGAAATAAAATCATCTCAATCATCTCCTTTTCTATAATTAGTTATTTTCTAGTCTAGC
                      ____________________________________________________________
consensus             ACAGAAATAAAATCATCTCAATCATCTCCTTTTCTATAATTAGTTATTTTCTAGTCTAGC
 
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rJMFF028D20+          AGTATAAATTAGAATCTCTAGATGAGGAGAGTAAATCATCATATCTTTTACCTTAGTCTT
rJMFF021O18+          AGTATAAATTAGAATCTCTAGATGAGGAGAGTAAATCATCATATCTTTTACCTTAGTCTT
                      ____________________________________________________________
consensus             AGTATAAATTAGAATCTCTAGATGAGGAGAGTAAATCATCATATCTTTTACCTTAGTCTT
 
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rJMFF028D20+          TAAGCTCTGAGTAGCGGGGCAAGAGCCTAAAGCTGTTGTTGGAGTAAGTCTCGTGACTTC
rJMFF021O18+          TAAGCTCTGAGTAGCGGGGCAAGAGCCTAAAGCTGTTGTTGGAGTAAGTCTCGTGACTTC
                      ____________________________________________________________
consensus             TAAGCTCTGAGTAGCGGGGCAAGAGCCTAAAGCTGTTGTTGGAGTAAGTCTCGTGACTTC