| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001N10 | Sequence | 520 | 004438 (4) | emb|CDO98827.1| | 1e-34 | unnamed protein product [Coffea canephora] | 759 | 002575 (4) | ref|XP_006354280.1| | 1e-81 | PREDICTED: P17/29C-like protein DDB_G0287399-like [Solanum tuberosum] |
| JMFF020L22 | Sequence | 533 | 004438 (4) | emb|CDO98827.1| | 2e-37 | unnamed protein product [Coffea canephora] | 733 | 002575 (4) | ref|XP_009758238.1| | 6e-77 | PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Nicotiana sylves |
| JMFF025M20 | Sequence | 551 | 004438 (4) | emb|CDO98827.1| | 3e-40 | unnamed protein product [Coffea canephora] | 337 | 002575 (4) | ref|XP_011091009.1| | 1e-17 | PREDICTED: ATP-dependent RNA helicase glh-2-like [Sesamum indicum] |
| JMSF044H05 | Sequence | 743 | 004438 (4) | emb|CDO98827.1| | 3e-65 | unnamed protein product [Coffea canephora] | 826 | 002575 (4) | ref|XP_004229269.1| | 4e-89 | PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Solanum lycopers |
This contig is upended
. : . : . : . : . : . :
rJMSF044H05+ TCCATCAAAC
____________________________________________________________
consensus TCCATCAAAC
. : . : . : . : . : . :
rJMSF044H05+ ACAACACATCTCATCCAAAGGTGGATGATTTTGGATTTTCTAATAATCAGCCACATGCTC
____________________________________________________________
consensus ACAACACATCTCATCCAAAGGTGGATGATTTTGGATTTTCTAATAATCAGCCACATGCTC
. : . : . : . : . : . :
rJMSF044H05+ AGTCCTCTGGTGGTGCTGGAGATTTTGATTCGCTTTTCCAGTCATCTACCACCTCATTTG
rJMFF001N10+ TGGAGATTTTGATTCGCTTTTCCAGTCATCTACCACCTCATTTG
rJMFF020L22+ ACCACCTCATTTG
____________________________________________________________
consensus AGTCCTCTGGTGGTGCTGGAGATTTTGATTCGCTTTTCCAGTCATCTACCACCTCATTTG
. : . : . : . : . : . :
rJMSF044H05+ GTGGATCTGCTGTGGAAAGTCAGCAATTTTCAGGGGGCGATGATTGGGGATTTGAGTCTG
rJMFF001N10+ GTGGATCTGCTGTGGAAAGTCAGCAATTTTCAGGGGGCGATGATTGGGGATTTGAGTCTG
rJMFF020L22+ GTGGATCTGCTGTGGAAAGTCAGCAATTTTCAGGGGGCGATGATTGGGGATTTGAGTCTG
____________________________________________________________
consensus GTGGATCTGCTGTGGAAAGTCAGCAATTTTCAGGGGGCGATGATTGGGGATTTGAGTCTG
. : . : . : . : . : . :
rJMSF044H05+ AGTTTGGAGGGGGACATGATAATGGCGGGACAACTGAGCTTGAAGGGCTTCCACCACCAC
rJMFF001N10+ AGTTTGGAGGGGGACATGATAATGGCGGGACAACTGAGCTTGAAGGGCTTCCACCACCAC
rJMFF020L22+ AGTTTGGAGGGGGACATGATAATGGCGGGACAACTGAGCTTGAAGGGCTTCCACCACCAC
____________________________________________________________
consensus AGTTTGGAGGGGGACATGATAATGGCGGGACAACTGAGCTTGAAGGGCTTCCACCACCAC
. : . : . : . : . : . :
rJMSF044H05+ CTGCTGGCCTCAGTGCTTCAACTGCAAAGAACAAGGGGATGGATAATTACAAGCAGGGAC
rJMFF001N10+ CTGCTGGCCTCAGTGCTTCAACTGCAAAGAACAAGGGGATGGATAATTACAAGCAGGGAC
rJMFF020L22+ CTGCTGGCCTCAGTGCTTCAACTGCAAAGAACAAGGGGATGGATAATTACAAGCAGGGAC
____________________________________________________________
consensus CTGCTGGCCTCAGTGCTTCAACTGCAAAGAACAAGGGGATGGATAATTACAAGCAGGGAC
. : . : . : . : . : . :
rJMSF044H05+ AATATGCTGATGCTATAAAATGGCTATCATGGGCCGTTGTTCTTCTTGAGAAAGCCAGTG
rJMFF001N10+ AATATGCTGATGCTATAAAATGGCTATCATGGGCCGTTGTTCTTCTTGAGAAAGCCAGTG
rJMFF020L22+ AATATGCTGATGCTATAAAATGGCTATCATGGGCCGTTGTTCTTCTTGAGAAAGCCAGTG
____________________________________________________________
consensus AATATGCTGATGCTATAAAATGGCTATCATGGGCCGTTGTTCTTCTTGAGAAAGCCAGTG
. : . : . : . : . : . :
rJMSF044H05+ ACGTAACTGGTACAGCAGAGGTGTTGTCATCTAGGGCTTCATGTTATAAAGAAGTAGGAG
rJMFF001N10+ ACGTAACTGGTACAGCAGAGGTGTTGTCATCTAGGGCTTCATGTTATAAAGAAGTAGGAG
rJMFF020L22+ ACGTAACTGGTACAGCAGAGGTGTTGTCATCTAGGGCTTCATGTTATAAAGAAGTAGGAG
____________________________________________________________
consensus ACGTAACTGGTACAGCAGAGGTGTTGTCATCTAGGGCTTCATGTTATAAAGAAGTAGGAG
. : . : . : . : . : . :
rJMSF044H05+ AGTACAAGAAGGCTGTGGCTGACTGCACAAAGGTGCTAGATCGTGATGAAACAAATGTAT
rJMFF001N10+ AGTACAAGAAGGCTGTGGCTGACTGCACAAAGGTGCTAGATCGTGATGAAACAAATGTAT
rJMFF020L22+ AGTACAAGAAGGCTGTGGCTGACTGCACAAAGGTGCTAGATCGTGATGAAACAAATGTAT
____________________________________________________________
consensus AGTACAAGAAGGCTGTGGCTGACTGCACAAAGGTGCTAGATCGTGATGAAACAAATGTAT
. : . : . : . : . : . :
rJMSF044H05+ CTGTCCTTGTACAGCGAGCTATGTTGTACGAAAATATGGAGAAGTACAAGCTTGGAGCTG
rJMFF001N10+ CTGTCCTTGTACAGCGAGCTATGTTGTACGAAAATATGGAGAAGTACAAGCTTGGAGCTG
rJMFF025M20+ CAGCGAGCTATGTTGTACGAAAATATGGAGAAGTACAAGCTTGGAGCTG
rJMFF020L22+ CTGTCCTTGTACAGCGAGCTATGTTGTACGAAAATATGGAGAAGTACAAGCTTGGAGCTG
____________________________________________________________
consensus CTGTCCTTGTACAGCGAGCTATGTTGTACGAAAATATGGAGAAGTACAAGCTTGGAGCTG
. : . : . : . : . : . :
rJMSF044H05+ AAGACTTGAGAACGGTTATGAAACTTGACCCTACTAACAGGGTCGCGAGAAGTACCATTC
rJMFF001N10+ AAGACTTGAGAACGGTTATGAAACTTGACCCTACTAACAGGGTCGCGAGAAGTACCATTC
rJMFF025M20+ AAGACTTGAGAACGGTTATGAAACTTGACCCTACTAACAGGGTCGCGAGAAGTACCATTC
rJMFF020L22+ AAGACTTGAGAACGGTTATGAAACTTGACCCTACTAACAGGGTCGCGAGAAGTACCATTC
____________________________________________________________
consensus AAGACTTGAGAACGGTTATGAAACTTGACCCTACTAACAGGGTCGCGAGAAGTACCATTC
. : . : . : . : . : . :
rJMSF044H05+ ATCGCTTGAATAAGATGGCTGGCTAGAGAAGTTGCACAGAATTATTTCTCCACAGGTCTC
rJMFF001N10+ ATCGCTTGAATAAGATGGCTGGCTAGAGAAGTTGCACAGAATTATTTCTCCACAGGTCTC
rJMFF025M20+ ATCGCTTGAATAAGATGGCTGGCTAGAGAAGTTGCACAGAATTATTTCTCCACAGGTCTC
rJMFF020L22+ ATCGCTTGAATAAGATGGCTGGCTAGAGAAGTTGCACAGAATTATTTCTCCACAGGTCTC
____________________________________________________________
consensus ATCGCTTGAATAAGATGGCTGGCTAGAGAAGTTGCACAGAATTATTTCTCCACAGGTCTC
. : . : . : . : . : . :
rJMSF044H05+ ATTTACAGATATGGCTGATGATATTGTTTTCTTTTTGCATAAGATTGTCTGATGGATCAT
rJMFF001N10+ ATTTACAGATATGGCTGATGATATTGTTTTCTTTTTGCATAAGATTGTCTGATGGATCAT
rJMFF025M20+ ATTTACAGATATGGCTGATGATATTGTTTTCTTTTTGCATAAGATTGTCTGATGGATCAT
rJMFF020L22+ ATTTACAGATATGGCTGATGATATTGTTTTCTTTTTGCATAAGATTGTCTGATGGATCAT
____________________________________________________________
consensus ATTTACAGATATGGCTGATGATATTGTTTTCTTTTTGCATAAGATTGTCTGATGGATCAT
. : . : . : . : . : . :
rJMSF044H05+ AGCACTTTACAGGGATGCGCCTTAAATCTTTCTTGATTCGTTTACTGTCTGCTTTTCACA
rJMFF001N10+ AGCACTTTACAGGGATGCGCCTTAAATCTTTCTTGATTCGTTTACTGTCTGCTTTTCACA
rJMFF025M20+ AGCACTTTACAGGGATGCGCCTTAAATCTTTCTTGATTCGTTTACTGTCTGCTTTTCACA
rJMFF020L22+ AGCACTTTACAGGGATGCGCCTTAAATCTTTCTTGATTCGTTTACTGTCTGCTTTTCACA
____________________________________________________________
consensus AGCACTTTACAGGGATGCGCCTTAAATCTTTCTTGATTCGTTTACTGTCTGCTTTTCACA
. : . : . : . : . : . :
rJMSF044H05+ TGTTGATGTTGTATTGTCTATTGAATGTTTCTCTTC
rJMFF001N10+ TGTTGATGTTGTATTGTCTATTGAATGTTTCTCTTCACTGGAAACTGTGTTATCT
rJMFF025M20+ TGTTGATGTTGTATTGTCTATTGAATGTTTCTCTTCACTNGAAACT
rJMFF020L22+ TGTTGATGTTGTATTGTCTATTGAATGTTTCTCTTCACTGGAAACTGTGTTATCTTTGGT
____________________________________________________________
consensus TGTTGATGTTGTATTGTCTATTGAATGTTTCTCTTCACTGGAAACTGTGTTATCTTTGGT