| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF018N09 | Sequence | 594 | 010561 (2) | ref|XP_009616044.1| | 7e-62 | PREDICTED: zinc finger protein 622 [Nicotiana tomentosiformis] | 812 | 002573 (3) | ref|XP_009616044.1| | 4e-104 | PREDICTED: zinc finger protein 622 [Nicotiana tomentosiformis] |
| JMSF004B05 | Sequence | 295 | 002065 (3) | ref|XP_009765930.1| | 70.1 | PREDICTED: uncharacterized protein LOC104217391 [Nicotiana sylvestris] | 327 | 002573 (3) | ref|XP_010102859.1| | 7e-26 | Zinc finger protein [Morus notabilis] ref|XP_010111936.1| Zinc finger protein [M |
| JMSF004D07 | Sequence | 260 | 010561 (2) | ref|XP_007161307.1| | 1e-38 | hypothetical protein PHAVU_001G058800g [Phaseolus vulgaris] gb|ESW33301.1| hypot | 189 | 002573 (3) | gb|KJB55201.1| | 5e-15 | hypothetical protein B456_009G068400 [Gossypium raimondii] gb|KJB55205.1| hypoth |
This contig is upended
. : . : . : . : . : . :
rJMFF018N09+ TAAAGCATAGACCAATAGAACGCTGTATGGTTC
____________________________________________________________
consensus TAAAGCATAGACCAATAGAACGCTGTATGGTTC
. : . : . : . : . : . :
rJMFF018N09+ ACATGCACAAGCAGCATGGATTCTTTATACCCGATGTTGAATATCTCAAGGACCCAAAAG
____________________________________________________________
consensus ACATGCACAAGCAGCATGGATTCTTTATACCCGATGTTGAATATCTCAAGGACCCAAAAG
. : . : . : . : . : . :
rJMFF018N09+ GCTTTCTGACTTATGTTGGTCTCAAGGTTAAGAGGGACTACCTATGTTTGTATTGCAATG
____________________________________________________________
consensus GCTTTCTGACTTATGTTGGTCTCAAGGTTAAGAGGGACTACCTATGTTTGTATTGCAATG
. : . : . : . : . : . :
rJMFF018N09+ ATAGATGCCAACCTTTCAGCAGTTTAGAAGGAGTTAGGAAGCATATGGAAGCAAAAAGTC
____________________________________________________________
consensus ATAGATGCCAACCTTTCAGCAGTTTAGAAGGAGTTAGGAAGCATATGGAAGCAAAAAGTC
. : . : . : . : . : . :
rJMFF018N09+ ATTGTAAAGTGCACTATGGTGATGGTGGTGATGATGAAGAGGCAGAATTAGAAGAATTTT
____________________________________________________________
consensus ATTGTAAAGTGCACTATGGTGATGGTGGTGATGATGAAGAGGCAGAATTAGAAGAATTTT
. : . : . : . : . : . :
rJMFF018N09+ ATGACTATAGCAGCAGTTATTTGGATGCAAATGGAAAAGAGCTGGTTGCATCAGATGACA
____________________________________________________________
consensus ATGACTATAGCAGCAGTTATTTGGATGCAAATGGAAAAGAGCTGGTTGCATCAGATGACA
. : . : . : . : . : . :
rJMFF018N09+ CTAGCAGTGGAGTTGAGCTTGGAAGTGGTGGGGCTGAGCTAATTATTAAAAAGAGAACTG
____________________________________________________________
consensus CTAGCAGTGGAGTTGAGCTTGGAAGTGGTGGGGCTGAGCTAATTATTAAAAAGAGAACTG
. : . : . : . : . : . :
rJMFF018N09+ ATGATGGAGTATCTACCATAACACTTGGATCAAGAGAGTATTTGCGATATTATCGACAAA
____________________________________________________________
consensus ATGATGGAGTATCTACCATAACACTTGGATCAAGAGAGTATTTGCGATATTATCGACAAA
. : . : . : . : . : . :
rJMSF004B05+ CGATATTGCTCTTACTGCTGCATTAGCTTCCAGGTATA
rJMSF004D07+ CTTCCAGGTATA
rJMFF018N09+ AACTGAGGCCCACTCGCACGAACGATATTGCTCTTACTGCTGCATTAGCTTCCAGGTATA
____________________________________________________________
consensus AACTGAGGCCCACTCGCACGAACGATATTGCTCTTACTGCTGCATTAGCTTCCAGGTATA
. : . : . : . : . : . :
rJMSF004B05+ GAAGCATGGGCCTAGCAACNGTGCAGTCGAGAGAAAACATGGTTAAGATGAAGGTGATGA
rJMSF004D07+ GAAGCATGGGCCTAGCAACCGTGCAGTCGAGAGAAAACATGGTTAAGATGAAGGTGATGA
rJMFF018N09+ GAAGCATGGGCCTAGCAACCGTGCAGTCGAGAGAAAACATGGTTAAGATGAAGGTGATGA
____________________________________________________________
consensus GAAGCATGGGCCTAGCAACCGTGCAGTCGAGAGAAAACATGGTTAAGATGAAGGTGATGA
. : . : . : . : . : . :
rJMSF004B05+ AGGCCACGAATAGGNATGGTAACGAGGCAATGCGCACCAAGATTGGTATAAGAAATAATG
rJMSF004D07+ AGGCCATGNATAGGTATGGTAACGAGGCAATGCGCACCAAGATTGGTATAAGAAATAATG
rJMFF018N09+ AGGCCATGAATAGGTATGGTAACGAGGCAATGCGCACCAAGATTGGTATAAGAAATAATG
____________________________________________________________
consensus AGGCCATGAATAGGTATGGTAACGAGGCAATGCGCACCAAGATTGGTATAAGAAATAATG
. : . : . : . : . : . :
rJMSF004B05+ TCATCCGAAATCTCCCCANTAACGNACCCTATTNATCCTTGTTATGTTATAAAGGTGATG
rJMSF004D07+ TCATCCGAAATCTCCCCAATAACGTACCCTATTAATCCTTGTTATGTTATAAAGG
rJMFF018N09+ TCATCCGAAATCTCCCCAATAACGTACCCTATTAATCCTTGTTATGTTATAAAGGTGATG
____________________________________________________________
consensus TCATCCGAAATCTCCCCAATAACGTACCCTATTAATCCTTGTTATGTTATAAAGGTGATG
. : . : . : . : . : . :
rJMSF004B05+ CTAGTTGTGNAACTTTTAATGGAGTTAANGAAATATATTGGGTGGGTGTTCGTCTTTGTT
rJMFF018N09+ CTAGTTGTGAAACTTTTAATGGAGTTAAGGAAATATATTGGGTGGGTGTTCGT-TTTGTT
____________________________________________________________
consensus CTAGTTGTGAAACTTTTAATGGAGTTAAGGAAATATATTGGGTGGGTGTTCGTCTTTGTT
. : . : . : . : . : . :
rJMSF004B05+ ACTTTTGTGCTTTCTCATTCTTGCCCTGGAATNTTTTCAGAGCGAATAT
rJMFF018N09+ ACTTTTGTGCTTTCTCATTCTTGCCTTGGAATGTTTTCAGAGAGAATATTGATAAGAATG
____________________________________________________________
consensus ACTTTTGTGCTTTCTCATTCTTGCCTTGGAATGTTTTCAGAGCGAATATTGATAAGAATG