| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014N21 | Sequence | 502 | 000914 (4) | ref|XP_009587605.1| | 1e-77 | PREDICTED: SNW/SKI-interacting protein-like [Nicotiana tomentosiformis] ref|XP_0 | 736 | 002557 (3) | ref|XP_002530606.1| | 1e-93 | nuclear protein skip, putative [Ricinus communis] gb|EEF31786.1| nuclear protein |
| JMSF033L16 | Sequence | 584 | 000914 (4) | ref|XP_009587605.1| | 2e-78 | PREDICTED: SNW/SKI-interacting protein-like [Nicotiana tomentosiformis] ref|XP_0 | 706 | 002557 (3) | gb|KHG23995.1| | 3e-91 | SNW domain-containing 1 [Gossypium arboreum] |
| JMSF041O13 | Sequence | 788 | 000914 (4) | ref|XP_009587605.1| | 2e-99 | PREDICTED: SNW/SKI-interacting protein-like [Nicotiana tomentosiformis] ref|XP_0 | 591 | 002557 (3) | ref|XP_002530606.1| | 5e-73 | nuclear protein skip, putative [Ricinus communis] gb|EEF31786.1| nuclear protein |
This contig is upended
. : . : . : . : . : . :
rJMFF014N21+ GGGACCGCGATGTTAG
____________________________________________________________
consensus GGGACCGCGATGTTAG
. : . : . : . : . : . :
rJMSF033L16+ TTGGTATGGCCTCAACTGGTGGCACAAGAGGAGAGGTTATGTATG
rJMFF014N21+ GTGAGAAAATGGCCNTTGGTATGNCCTCAACTGGTGGCACAAGAGGAGAGGTTATGTATG
____________________________________________________________
consensus GTGAGAAAATGGCCNTTGGTATGGCCTCAACTGGTGGCACAAGAGGAGAGGTTATGTATG
. : . : . : . : . : . :
rJMSF033L16+ ATCAGAGNTTATTTAACCAGGAGAAGGGGATGGAATCTGGTTTTGCCACTGATGATGCAT
rJMSF041O13+ CCACTGATGATGCAT
rJMFF014N21+ ATCAGAGGTTATTTAACCAGGAGAAGGGGATGGAATCTGGTTTTGCCACTGATGATGCAT
____________________________________________________________
consensus ATCAGAGGTTATTTAACCAGGAGAAGGGGATGGAATCTGGTTTTGCCACTGATGATGCAT
. : . : . : . : . : . :
rJMSF033L16+ ATAATATTTATGACAAAGGTCTCTTTACTGCCCAACCTACACTCTCTACTCTCTACAGAC
rJMSF041O13+ ATAATATTTATGACAAAGGTCTCTTTACTGCCCAACCTACACTCTCTACTCTCTACAGAC
rJMFF014N21+ ATAATATTTATGACAAAGGTCTCTTTACTGCCCAACCTACACTCTCTACTCTCTACAGAC
____________________________________________________________
consensus ATAATATTTATGACAAAGGTCTCTTTACTGCCCAACCTACACTCTCTACTCTCTACAGAC
. : . : . : . : . : . :
rJMSF033L16+ CAAAGAAAGATGCCGATGCTGAGATGTATGGTGGNGCAGATGAGCAACTGGATAAAATTA
rJMSF041O13+ CAAAGAAAGATGCCGATGCTGAGATGTATGGTGGTGCAGATGAGCAACTGGATAAAATTA
rJMFF014N21+ CAAAGAAAGATGCCGATGCTGAGATGTATGGTGGTGCAGATGAGCAACTGGATAAAATTA
____________________________________________________________
consensus CAAAGAAAGATGCCGATGCTGAGATGTATGGTGGTGCAGATGAGCAACTGGATAAAATTA
. : . : . : . : . : . :
rJMSF033L16+ TGAAAACAGNCCGTTTTAAACCCGACAAGGGATTTACTGGAGCCTCTGAGAGGGCTGGTG
rJMSF041O13+ TGAAAACAGACCGTTTTAAACCCGACAAGGGATTTACTGGAGCCTCTGAGAGGGCTGGTG
rJMFF014N21+ TGAAAACAGACCGTTTTAAACCCGACAAGGGATTTACTGGAGCCTCTGAGAGGGCTGGTG
____________________________________________________________
consensus TGAAAACAGACCGTTTTAAACCCGACAAGGGATTTACTGGAGCCTCTGAGAGGGCTGGTG
. : . : . : . : . : . :
rJMSF033L16+ CTAGAGATAGGCCTGTAGAGTTTGAGAAGGAGGCTGAGGAGGCAGATCCATTTGGGTTGG
rJMSF041O13+ CTAGAGATAGGCCTGTAGAGTTTGAGAAGGAGGCTGAGGAGGCAGATCCATTTGGGTTGG
rJMFF014N21+ CTAGAGATAGGCCTGTAGAGTTTGAGAAGGAGGCTGAGGAGGCAGATCCATTTGGGTTGG
____________________________________________________________
consensus CTAGAGATAGGCCTGTAGAGTTTGAGAAGGAGGCTGAGGAGGCAGATCCATTTGGGTTGG
. : . : . : . : . : . :
rJMSF033L16+ ACCAGTTTTTAACTGAGGTGAAGAAGGGTAAAAAAGCCATGGACAAAGTAGGCGGTGGAG
rJMSF041O13+ ACCAGTTTTTAACTGAGGTGAAGAAGGGTAAAAAAGCCATGGACAAAGTAGGCGGTGGAG
rJMFF014N21+ ACCAGTTTTTAACTGAGGTGAAGAAGGGTAAAAAAGCCATGGACAAAGTAGGCGGTGGAG
____________________________________________________________
consensus ACCAGTTTTTAACTGAGGTGAAGAAGGGTAAAAAAGCCATGGACAAAGTAGGCGGTGGAG
. : . : . : . : . : . :
rJMSF033L16+ GTACCATGAAGGCCAGTGCCGGCTCCACTCGAGATGGCTATGAAGGAGGATCTAGTAGAT
rJMSF041O13+ GTACCATGAAGGCCAGTGCCGGCTCCACTCGAGATGGCTATGAAGGAGGATCTAGTAGAT
rJMFF014N21+ GTACCATGAAGGCCAGTGCCGGCTCCACTCGAGATGGCTATGAAGGAGGATCTAGTAGAT
____________________________________________________________
consensus GTACCATGAAGGCCAGTGCCGGCTCCACTCGAGATGGCTATGAAGGAGGATCTAGTAGAT
. : . : . : . : . : . :
rJMSF033L16+ CAAGGATTAACTTTGAGAGGGGGCGTTAAGATGTATCTTTGCGAAAGAGTCTATGCTTGC
rJMSF041O13+ CAAGGATTAACTTTGAGAGGGGGCGTTAAGATGTATCTTTGCGAAAGAGTCTATGCTTGC
rJMFF014N21+ CAAGGATTAACTTTGAGAGGGGGCGTTAAGATGTATCTTTGCGAAAGAGTCTATGCTTGC
____________________________________________________________
consensus CAAGGATTAACTTTGAGAGGGGGCGTTAAGATGTATCTTTGCGAAAGAGTCTATGCTTGC
. : . : . : . : . : . :
rJMSF033L16+ CCAGGTCATGAAGAATTCGACACTCCAAACTCCAAATTGTCTTTTTATGTTCCTTGTGTG
rJMSF041O13+ CCAGGTCATGAAGAATTCGACACTCCAAACTCCAAATTGTCTTTTTATGTTCCTTGTGTG
rJMFF014N21+ CCAGGTCATGAAGAATTCGACACTCCAAACTCCAAATTGTCTTTTTATGTTCCTTGTGTG
____________________________________________________________
consensus CCAGGTCATGAAGAATTCGACACTCCAAACTCCAAATTGTCTTTTTATGTTCCTTGTGTG
. : . : . : . : . : . :
rJMSF033L16+ GTTTTACAGAGTTGTTAGACTCAAACTATTTATACAATTTGGTTTCTTCCTTTGTTTGAT
rJMSF041O13+ GTTTTACAGAGTTGTTAGACTCAAACTATTTATACAATTTGGTTTCTTCCTTTGTTTGAT
rJMFF014N21+ GTTTTACAGAGTTGTTAGACTCAAACTATTTATACAATTTGGTTTCTTCCTTTGTGTGAT
____________________________________________________________
consensus GTTTTACAGAGTTGTTAGACTCAAACTATTTATACAATTTGGTTTCTTCCTTTGTTTGAT
. : . : . : . : . : . :
rJMSF033L16+ GCTATTTTGTATCATATTTAAATTGTCTAATAGGCACTGTTNTTAATCATTATAAGAACC
rJMSF041O13+ GCTATTTTGTATCATATTTAAATTGTCTAATAGGCA
rJMFF014N21+ GCTATTTTGTATCATATTTAAATTGTCTAATAGGCACTGTTTTTAATCATTATAAGAACC
____________________________________________________________
consensus GCTATTTTGTATCATATTTAAATTGTCTAATAGGCACTGTTTTTAATCATTATAAGAACC