clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF014I16 | Sequence | 500 | 007859 (3) | ref|XP_009620236.1| | 3e-58 | PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Nicotian | 761 | 002553 (3) | ref|XP_006346080.1| | 4e-97 | PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Solanum |
JMFF025D11 | Sequence | 591 | 007859 (3) | ref|XP_009620236.1| | 2e-68 | PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Nicotian | 723 | 002553 (3) | ref|XP_004244333.1| | 7e-95 | PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Solanum |
JMSF019G07 | Sequence | 221 | 007859 (3) | ref|XP_009793722.1| | 2e-04 | PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Nicotian | 756 | 002553 (3) | ref|XP_006346080.1| | 1e-99 | PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Solanum |
This contig is upended
. : . : . : . : . : . :
rJMSF019G07+ GGTGGATACACAGATACATCCAGAAAATGCGAATTCCGGTCAGTCTTAA
rJMFF025D11+ TAA
rJMFF014I16+ CACAGATACATCCAGAAAATGCGAATTCCGGTCAGTCTTAA
____________________________________________________________
consensus GGTGGATACACAGATACATCCAGAAAATGCGAATTCCGGTCAGTCTTAA
. : . : . : . : . : . :
rJMSF019G07+ CCTGGGAACTGCTCTGGTTGACATGTATGCAAGGTGTGGCAGCATAGAGTTTAGCTATGA
rJMFF025D11+ CCTGGGAACTGCTCTGGTTGACATGTATGCAAGGTGTGGCAGCATAGAGTTTAGCTATGA
rJMFF014I16+ CCTGGGAACTGCTCTGGTTGACATGTATGCAAGGTGTGGCAGCATAGAGTTTAGCTATGA
____________________________________________________________
consensus CCTGGGAACTGCTCTGGTTGACATGTATGCAAGGTGTGGCAGCATAGAGTTTAGCTATGA
. : . : . : . : . : . :
rJMSF019G07+ AGTCTTCAAGAAAATGCCAAGAAAAGATGTTGTTACCTGGGGAGTCATTATTGCAGGGTT
rJMFF025D11+ AGTCTTCAAGAAAATGCCAAGAAAAGATGTTGTTACCTGGGGAGTCATTATTGCAGGGTT
rJMFF014I16+ AGTCTTCAAGAAAATGCCAAGAAAAGATGTTGTTACCTGGGGAGTCATTATTGCAGGGTT
____________________________________________________________
consensus AGTCTTCAAGAAAATGCCAAGAAAAGATGTTGTTACCTGGGGAGTCATTATTGCAGGGTT
. : . : . : . : . : . :
rJMSF019G07+ CGCAATCCATGGCCACGCTAACAAATGCTTCGAGCTTCTTGATGAGATGATCAGTGCAGG
rJMFF025D11+ CGCAATCCATGGCCACGCTAACAAATGCTTCGAGCTTCTTGATGAGATGATCAGTGCAGG
rJMFF014I16+ CGCAATCCATGGCCACGCTAACAAATGCTTCGAGCTTCTTGATGAGATGATCAGTGCAGG
____________________________________________________________
consensus CGCAATCCATGGCCACGCTAACAAATGCTTCGAGCTTCTTGATGAGATGATCAGTGCAGG
. : . : . : . : . : . :
rJMSF019G07+ AACTAACCCAAACAGCATCATTTTCGCATCCCTGCTCTCTGCCTGTTCATACGCGGGACT
rJMFF025D11+ AACTAACCCAAACAGCATCATTTTCGCATCCCTGCTCTCTGCCTGTTCATACGCGGGACT
rJMFF014I16+ AACTAACCCAAACAGCATCATTTTCGCATCCCTGCTCTCTGCCTGTTCATACGCGGGACT
____________________________________________________________
consensus AACTAACCCAAACAGCATCATTTTCGCATCCCTGCTCTCTGCCTGTTCATACGCGGGACT
. : . : . : . : . : . :
rJMSF019G07+ GCTTGAACATGGCTTCAACTATTTCCACCTGATGGTGAACCAATACAAGATCACACCAAG
rJMFF025D11+ GCTTGAACATGGCTTCAACTATTTCCACCTGATGGTGAACCAATACAAGATCACACCAAG
rJMFF014I16+ GCTTGAACATGGCTTCAACTATTTCCACCTGATGGTGAACCAATACAAGATCACACCAAG
____________________________________________________________
consensus GCTTGAACATGGCTTCAACTATTTCCACCTGATGGTGAACCAATACAAGATCACACCAAG
. : . : . : . : . : . :
rJMSF019G07+ CATTGAGCATTATGGGTGCCTGGTAGACCTCATAGGCCGCGCTGGGAGGCTTGCAGAAGC
rJMFF025D11+ CATTGAGCATTATGGGTGCCTGGTAGACCTCATAGGCCGCGCTGGGAGGCTTGCAGAAGC
rJMFF014I16+ CATTGAGCATTATGGGTGCCTGGTAGACCTCATAGGCCGCGCTGGGAGGCTTGCAGAAGC
____________________________________________________________
consensus CATTGAGCATTATGGGTGCCTGGTAGACCTCATAGGCCGCGCTGGGAGGCTTGCAGAAGC
. : . : . : . : . : . :
rJMSF019G07+ AGAAGAGCTGATTTCAGCTATGCCAATGGAACCCAACTCTGTGATATGGGGATCACTTCT
rJMFF025D11+ AGAAGAGCTGATTTCAGCTATGCCAATGGAACCCAACTCTGTGATATGGGGATCACTTCT
rJMFF014I16+ AGAAGAGCTGATTTCAGCTATGCCAATGGAACCCAACTCTGTGATATGGGGATCACTTCT
____________________________________________________________
consensus AGAAGAGCTGATTTCAGCTATGCCAATGGAACCCAACTCTGTGATATGGGGATCACTTCT
. : . : . : . : . : . :
rJMSF019G07+ CAATGCCTGCAGAATTCACAAAGACCAACAAAGGGGAGAACGGGCGTTCCGGGAGCTAAT
rJMFF025D11+ CAATGCCTGCAGAATTCACAAAGACCAACAAAGGGGAGAACGGGCGTTCCGGGAGCTAAT
rJMFF014I16+ CAATGCCTGCAGAATTCACAAAGACCAACAAAGGGGAGAACGGGCGTTCCGGGAGCTAAT
____________________________________________________________
consensus CAATGCCTGCAGAATTCACAAAGACCAACAAAGGGGAGAACGGGCGTTCCGGGAGCTAAT
. : . : . : . : . : . :
rJMSF019G07+ CAGATTAGATCCATCTGGGGATAGGTATAAACTAGCAGCTTACCTGTGGCATAACAACAG
rJMFF025D11+ CAGATTAGATCCATCTGGGGATAGGTATAAACTAGCAGCTTACCTGTGGCATAACAACAG
rJMFF014I16+ CAGATTAGATCCATCTGGGGATAGGTATAAACTAGCAGCTTACCTGTGGCATAACAACAG
____________________________________________________________
consensus CAGATTAGATCCATCTGGGGATAGGTATAAACTAGCAGCTTACCTGTGGCATAACAACAG
. : . : . : . : . : . :
rJMSF019G07+ AGAGCTAGATGAAAATATATGGAATGGAAAGGATAATAAACCTGGTTTAAGTGTCATTGA
rJMFF025D11+ AGAGCTAGATGAAAATATATGGAATGGAAAGGATAATAAACCTGGTTTAAGTGTCATTGA
rJMFF014I16+ AGAGCTAGATGAAAATATATGGAATGGAAAGGATAATAAACCTGGTTTAAGTGTCATTGA
____________________________________________________________
consensus AGAGCTAGATGAAAATATATGGAATGGAAAGGATAATAAACCTGGTTTAAGTGTCATTGA
. : . : . : . : . : . :
rJMSF019G07+ GGTCAGTGGTGTAACTCATGAGTTCATGGTAAGGGATATCAGTCATAAACACTCTCAAGA
rJMFF025D11+ GGTCAGTGGTGTAACTCATGAGTTCATGGTAAGGGATATCAGTCATAAACACTCTCAAGA
rJMFF014I16+ GGTCAGTGGTGTAACTCATGAGTTCATGGTAAGGGATATCAGTCATAAACACTCTCAAGA
____________________________________________________________
consensus GGTCAGTGGTGTAACTCATGAGTTCATGGTAAGGGATATCAGTCATAAACACTCTCAAGA
. : . : . : . : . : . :
rJMSF019G07+ CATATATCAGATGATGGAAGGATCAAGGGATTAACAAGAAGCACAAA
rJMFF025D11+ CATATATCAGATGATGGAAGGATCAAGGGATTAACAAGAAGCACAAATTCTGCAGAACTG
rJMFF014I16+ CATATATCAGATGATGGAAGGATCAAGGGATTAACAAGAAGCACAAATTCTGCAGAACTG
____________________________________________________________
consensus CATATATCAGATGATGGAAGGATCAAGGGATTAACAAGAAGCACAAATTCTGCAGAACTG