Contig 002534:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005K19Sequence467008782 (8)ref|XP_010531526.1|6e-85PREDICTED: V-type proton ATPase subunit B2 [Tarenaya hassleriana] ref|XP_0105315743002534 (8)gb|AEZ00886.1|2e-95putative nucleotide-binding subunit of vacuolar, partial [Elaeis guineensis]
JMFF009M17Sequence619008782 (8)ref|XP_010555212.1|356PREDICTED: V-type proton ATPase subunit B2-like [Tarenaya hassleriana] ref|XP_01782002534 (8)gb|AEZ00886.1|6e-80putative nucleotide-binding subunit of vacuolar, partial [Elaeis guineensis]
JMFF011B11Sequence536008782 (8)gb|KJB39257.1|3e-92hypothetical protein B456_007G004300 [Gossypium raimondii]784002534 (8)gb|AEZ00886.1|3e-93putative nucleotide-binding subunit of vacuolar, partial [Elaeis guineensis]
JMFF020L14Sequence498008782 (8)gb|KJB39257.1|1e-81hypothetical protein B456_007G004300 [Gossypium raimondii]768002534 (8)gb|AEZ00886.1|2e-94putative nucleotide-binding subunit of vacuolar, partial [Elaeis guineensis]
JMFF021A13Sequence472008782 (8)ref|XP_010555212.1|261PREDICTED: V-type proton ATPase subunit B2-like [Tarenaya hassleriana] ref|XP_01640002534 (8)ref|XP_008377719.1|6e-69PREDICTED: V-type proton ATPase subunit B 2-like [Malus domestica]
JMFF047G08Sequence428008782 (8)emb|CDP14545.1|6e-74unnamed protein product [Coffea canephora]315002534 (8)ref|XP_008382093.1|4e-19PREDICTED: V-type proton ATPase subunit B2 [Malus domestica] ref|XP_008382094.1|
JMSF026E11Sequence691008782 (8)ref|XP_010531526.1|5e-133PREDICTED: V-type proton ATPase subunit B2 [Tarenaya hassleriana] ref|XP_0105315766002534 (8)gb|AEZ00886.1|3e-95putative nucleotide-binding subunit of vacuolar, partial [Elaeis guineensis]
JMSF039B17Sequence660008782 (8)ref|XP_007036768.1|380ATPase, V1 complex, subunit B protein isoform 3 [Theobroma cacao] ref|XP_0070367854002534 (8)dbj|BAD95251.1|7e-131vacuolar-type H+-ATPase subunit B2 [Arabidopsis thaliana]

Alignment

This contig is upended


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rJMSF039B17+ TGGATATCCTGGTTATATGTATACTGATCTTGCTACAATCTA
                      ____________________________________________________________
consensus TGGATATCCTGGTTATATGTATACTGATCTTGCTACAATCTA
 
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rJMSF039B17+ TGAGCGGGCTGGGCGTATTGAAGGACGAAAGGGCTCCATTACACAAATTCCAATTCTAAC
                      ____________________________________________________________
consensus TGAGCGGGCTGGGCGTATTGAAGGACGAAAGGGCTCCATTACACAAATTCCAATTCTAAC
 
. : . : . : . : . : . :
rJMSF039B17+ CATGCCTAATGATGACATTACACATCCCACTCCTGATCTGACTGGTTATATCACTGAAGG
rJMSF026E11+ GATCTGACTGGTTATATCACTGAAGG
rJMFF005K19+ GATCTGACTGGTTATATCACTGAAGG
rJMFF020L14+ GATCTGACTGGTTATATCACTGAAGG
rJMFF011B11+ TCTGACTGGTTATATCACTGAAGG
rJMFF009M17+ GG
                      ____________________________________________________________
consensus CATGCCTAATGATGACATTACACATCCCACTCCTGATCTGACTGGTTATATCACTGAAGG
 
. : . : . : . : . : . :
rJMSF039B17+ GCAAATATATATTGACAGACAGCTTCATAA-CCGGCAGATATATCCACCAATCAATGTGC
rJMSF026E11+ GCAAATATATATTGACAGACAGCTTCATAA-CCGGCAGATATATCCACCAATCAATGTGC
rJMFF005K19+ GCAAATATATATTGACAGACAGCTTCATAA-CCGGCAGATATATCCACCAATCAATGTGC
rJMFF020L14+ GCAAATATATATNGACAGACAGCTTCATAA-CCGGCAGATATATCCACCAATCAATGTGC
rJMFF011B11+ GCAAATATATATTGACAGACAGCTTCAT-ANCCGGCAGATATATCCACCAATCAATGTGC
rJMFF009M17+ GCAAATATATATTGACAGACAGCTTCATAACCCGGCAGATATATCCACCAATCAATGTGC
                      ____________________________________________________________
consensus GCAAATATATATTGACAGACAGCTTCATAA-CCGGCAGATATATCCACCAATCAATGTGC
 
. : . : . : . : . : . :
rJMSF039B17+ TTCCATCTTTGTCTCGTTTGATGAAGAGTGCTATTGGTGAAGGTATGACTAGGAGGGATC
rJMSF026E11+ TTCCATCTTTGTCTCGTTTGATGAAGAGTGCTATTGGTGAAGGTATGACTAGGAGGGATC
rJMFF005K19+ TTCCATCTTTGTCTCGTTTGATGAAGAGTGCTATTGGTGAAGGTATGACTAGGAGGGATC
rJMFF020L14+ TTCCATCTTTGTCTCGTTTGATGAAGAGTGCTATTGGTGAAGGTATGACTAGGAGGGATC
rJMFF011B11+ TTCCATCTTTGTCTCGTTTGATGAAGAGTGCTATTGGTGAAGGTATGACTAGGAGGGATC
rJMFF021A13+ TGATGAAGAGTGCTATTGGTGAAGGTATGACTAGGAGGGATC
rJMFF009M17+ TTCCATCTTTGTCTCGTTTGATGAAGAGTGCTATTGGTGAAGGTATGACTAGGAGGGATC
                      ____________________________________________________________
consensus TTCCATCTTTGTCTCGTTTGATGAAGAGTGCTATTGGTGAAGGTATGACTAGGAGGGATC
 
. : . : . : . : . : . :
rJMSF039B17+ ATTCTGATGTATCAAACCAGCTGTATGCAAATTATGCCATTGGGAAGGATGTCCAGGCAA
rJMSF026E11+ ATTCTGATGTATCAAACCAGCTGTATGCAAATTATGCCATTGGGAAGGATGTCCAGGCAA
rJMFF005K19+ ATTCTGATGTATCAAACCAGCTGTATGCAAATTATGCCATTGGGAAGGATGTCCAGGCAA
rJMFF020L14+ ATTCTGATGTATCAAACCAGCTGTATGCAAATTATGCCATTGGGAAGGATGTCCAGGCAA
rJMFF011B11+ ATTCTGATGTATCAAACCAGCTGTATGCAAATTATGCCATTGGGAAGGATGTCCAGGCAA
rJMFF021A13+ ATTCTGATGTATCAAACCAGCTGTATGCAAATTATGCCATTGGGAAGGATGTCCAGGCAA
rJMFF009M17+ ATTCTGATGTATCAAACCAGCTGTATGCAAATTATGCCATTGGGAAGGATGTCCAGGCAA
                      ____________________________________________________________
consensus ATTCTGATGTATCAAACCAGCTGTATGCAAATTATGCCATTGGGAAGGATGTCCAGGCAA
 
. : . : . : . : . : . :
rJMSF039B17+ TGAAAGCTGTGGTTGGAGAAGAAGCCCTTTCTTCTGAGGACCTGTTGTATCTCGAGTTTC
rJMSF026E11+ TGAAAGCTGTGGTTGGAGAAGAAGCCCTTTCTTCTGAGGACCTGTTGTATCTCGAGTTTC
rJMFF005K19+ TGAAAGCTGTGGTTGGAGAAGAAGCCCTTTCTTCTGAGGACCTGTTGTATCTCGAGTTTC
rJMFF020L14+ TGAAAGCTGTGGTTGGAGAAGAAGCCCTTTCTTCTGAGGACCTGTTGTATCTCGAGTTTC
rJMFF011B11+ TGAAAGCTGTGGTTGGAGAAGAAGCCCTTTCTTCTGAGGACCTGTTGTATCTCGAGTTTC
rJMFF021A13+ TGAAAGCTGTGGTTGGAGAAGAAGCCCTTTCTTCTGAGGACCTGTTGTATCTCGAGTTTC
rJMFF009M17+ TGAAAGCTGTGGTTGGAGAAGAAGCCCTTTCTTCTGAGGACCTGTTGTATCTCGAGTTTC
                      ____________________________________________________________
consensus TGAAAGCTGTGGTTGGAGAAGAAGCCCTTTCTTCTGAGGACCTGTTGTATCTCGAGTTTC
 
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rJMSF039B17+ TTGACAAATTCGAGAGGAAGTTTGTTACTCAAGGAGCATATGATACACGCAACATCTTCC
rJMSF026E11+ TTGACAAATTCGAGAGGAAGTTTGTTACTCAAGGAGCATATGATACACGCAACATCTTCC
rJMFF005K19+ TTGACAAATTCGAGAGGAAGTTTGTTACTCAAGGAGCATATGATACACGCAACATCTTCC
rJMFF020L14+ TTGACAAATTCGAGAGGAAGTTTGTTACTCAAGGAGCATATGATACACGCAACATCTTCC
rJMFF011B11+ TTGACAAATTCGAGAGGAAGTTTGTTACTCAAGGAGCATATGATACACGCAACATCTTCC
rJMFF021A13+ TTGACAAATTCGAGAGGAAGTTTGTTACTCAAGGAGCATATGATACACGCAACATCTTCC
rJMFF047G08+ GATACACGCAACATCTTCC
rJMFF009M17+ TTGACAAATTCGAGAGGAAGTTTGTTACTCAAGGAGCATATGATACACGCAACATCTTCC
                      ____________________________________________________________
consensus TTGACAAATTCGAGAGGAAGTTTGTTACTCAAGGAGCATATGATACACGCAACATCTTCC
 
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rJMSF039B17+ AATCACTTGATTTAGCATGGACACTACTTCGAATTTTCCCCCGTGAGCTTCTTCATCGTA
rJMSF026E11+ AATCACTTGATTTAGCATGGACACTACTTCGAATTTTCCCCCGTGAGCTTCTTCATCGTA
rJMFF005K19+ AATCACTTGATTTAGCATGGACACTACTTCGAATTTTCCCCCGTGAGCTTCTTCATCGTA
rJMFF020L14+ AATCACTTGATTTAGCATGGACACTACTTCGAATTTTCCCCCGTGAGCTTCTTCATCGTA
rJMFF011B11+ AATCACTTGATTTAGCATGGACACTACTTCGAATTTTCCCCCGTGAGCTTCTTCATCGTA
rJMFF021A13+ AATCACTTGATTTAGCATGGACACTACTTCGAATTTTCCCCCGTGAGCTTCTTCATCGTA
rJMFF047G08+ AATCACTTGATTTAGCATGGACACTACTTCGAATTTTCCCCCGTGAGCTTCTTCATCGTA
rJMFF009M17+ AATCACTTGATTTAGCATGGACACTACTTCGAATTTTCCCCCGTGAGCTTCTTCATCGTA
                      ____________________________________________________________
consensus AATCACTTGATTTAGCATGGACACTACTTCGAATTTTCCCCCGTGAGCTTCTTCATCGTA
 
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rJMSF039B17+ TCCCAGCAAAGACCCTGGATCTATTCTACAGCAGAGACACAGCTAGTTAAGGGTTAGAGA
rJMSF026E11+ TCCCAGCAAAGACCCTGGATCTATTCTACAGCAGAGACACAGCTAGTTAAGGGTTAGAGA
rJMFF005K19+ TCCCAGCAAAGACCCTGGATCTATTCTACAGCAGAGACACAGCTAGTTAAGGGTTAGAGA
rJMFF020L14+ TCCCAGCAAAGACCCTGGATCTATTCTACAGCAGAGACACAGCTAGTTAAGGGTTAGAGA
rJMFF011B11+ TCCCAGCAAAGACCCTGGATCTATTCTACAGCAGAGACACAGCTAGTTAAGGGTTAGAGA
rJMFF021A13+ TCCCAGCAAAGACCCTGGATCTATTCTACAGCAGAGACACAGCTAGTTAAGGGTTAGAGA
rJMFF047G08+ TCCCAGCAAAGACCCTGGATCTATTCTACAGCAGAGACACAGCTAGTTAAGGGTTAGAGA
rJMFF009M17+ TCCCAGCAAAGACCCTGGATCTATTCTACAGCAGAGACACAGCTAGTTAAGGGTTAGAGA
                      ____________________________________________________________
consensus TCCCAGCAAAGACCCTGGATCTATTCTACAGCAGAGACACAGCTAGTTAAGGGTTAGAGA
 
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rJMSF039B17+ GCTTTGTACTCTAGATTATCTGCTGTGTGATTGCCTGCCTTGCTTGAGCGTTACTTTATG
rJMSF026E11+ GCTTTGTACTCTAGATTATCTGCTGTGTGATTGCCTGCCTTGCTTGAGCGTTACTTTATG
rJMFF005K19+ GCTTTGTACTCTAGATTATCTGCTGTGTGATTGCCTGCCTTGCTTGAGCGTTACTTTATG
rJMFF020L14+ GCTTTGTACTCTAGATTATCTGCTGTGTGATTGCCTGCCTTGCTTGAGCGTTACTTTATG
rJMFF011B11+ GCTTTGTACTCTAGATTATCTGCTGTGTGATTGCCTGCCTTGCTTGAGCGTTACTTTATG
rJMFF021A13+ GCTTTGTACTCTAGATTATCTGCTGTGTGATTGCCTGCCTTGCTTGAGCGTTACTTTATG
rJMFF047G08+ GCTTTGTACTCTAGATTATCTGCTGTGTGATTGCCTGCCTTGCTTGAGCGTTACTTTATG
rJMFF009M17+ GCTTTGTACTCTAGATTATCTGCTGTGTGATTGCCTGCCTTGCTTGAGCGTTACTTTATG
                      ____________________________________________________________
consensus GCTTTGTACTCTAGATTATCTGCTGTGTGATTGCCTGCCTTGCTTGAGCGTTACTTTATG
 
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rJMSF039B17+ GTGCTTTCTTAGCTTGTCGATCTCTTTCTCGTTCAATAATAAAAGCTTTCTTATAAAATG
rJMSF026E11+ GTGCTTTCTTAGCTTGTCGATCTCTTTCTCGTTCAATAATAAAAGCTTTCTTATAAAATG
rJMFF005K19+ GTGCTTTCTTAGCTTGTCGATCTCTTTCTCGTTCAATAATAAAAGCTTTCTTATAAAATG
rJMFF020L14+ GTGCTTTCTTAGCTTGTCGATCTCTTTCTCGTTCAATAATAAAAGCTTTCTTATAAAATG
rJMFF011B11+ GTGCTTTCTTAGCTTGTCGATCTCTTTCTCGTTCAATAATAAAAGCTTTCTTATAAAATG
rJMFF021A13+ GTGCTTTCTTAGCTTGTCGATCTCTTTCTCGTTCAATAATAAAAGCTTTCTTATAAAATG
rJMFF047G08+ GTGCTTTCTTAGCTTGTCGATCTCTTTCTCGTTCAATAATAAAAGCTTTCTTAT
rJMFF009M17+ GTGCTTTCTTAGCTTGTCGATCTCTTTCTCGTTCAATAATAAAAGCTTTCTTATAAAATG
                      ____________________________________________________________
consensus GTGCTTTCTTAGCTTGTCGATCTCTTTCTCGTTCAATAATAAAAGCTTTCTTATAAAATG
 
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rJMSF039B17+ AGTGTACGAGCTCTTCTACGGCGTTAAGACACACATTCATATTCTTTGAGACCCAGTTAA
rJMSF026E11+ AGTGTACGAGCTCTTCTACGGCGTTAAGACACACATTCATATTCTTTGAGACCCAGTTAA
rJMFF005K19+ AGTGTACGAGCTCTTCTACGGCGTTAAGACACACATTCATATTCTTTGAGACCCAGTTAA
rJMFF020L14+ AGTGTACGAGCTCTTCTACGGCGTTAAGACACACATTCATATTCTTTGAGACCCAGTTAA
rJMFF011B11+ AGTGTACGAGCTCTTCTACGGCGTTAAGACACACATTCATATTCTTTGAGACCCAGTTAA
rJMFF021A13+ AGTGTACGAGCTCTTCTACGGCGTTAAGACACACATTCATATTCTTTGAGACCCAGTTAA
rJMFF009M17+ AGTGTACGAGCTCTTCTACGGCGTTAAGACACACATTCATATTCTTTGAGACCCAGTTAA
                      ____________________________________________________________
consensus AGTGTACGAGCTCTTCTACGGCGTTAAGACACACATTCATATTCTTTGAGACCCAGTTAA
 
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rJMSF039B17+ ATTATGTAATCCGTTTCTTATTTTTATTTGGTTTGATTGTGACAGTCCATATGTATTAGT
rJMSF026E11+ ATTATGTAATCCGTTTCTTATTTTTATTTGGTTTGATTGTGACAGTCCATATGTATTAGT
rJMFF005K19+ ATTATGTAATCCGTTTCTTATTTTTATTTGGTTTGATTGTGACAGTCCATATGTATTAGT
rJMFF020L14+ ATTATGTAATCCGTTTCTTATTTTTATTTGGTTTGATTGTGACAGTCCATATGTATTAGT
rJMFF011B11+ ATTATGTAATCCGTTTCTTATTTTTATTTGGTTTGATTGTGACAGTCCATATGTATTAGT
rJMFF021A13+ ATTATGTAATCCGTTTCTTATTTTTATTTGGTTTGATTGTGACAGTCCATATGTATTAGT
rJMFF009M17+ ATTATGTAATCCGTTTCTTATTTTTATTTGGTTTGATTGTGACAGTCCATATGTATTAGT
                      ____________________________________________________________
consensus ATTATGTAATCCGTTTCTTATTTTTATTTGGTTTGATTGTGACAGTCCATATGTATTAGT
 
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rJMSF039B17+ AGATTTTAAGTTATGTATAATGTTTTGAGTTTT
rJMSF026E11+ AGATTTTAAGTTATGTATAATGTTTTGAGTTTTTATGTAATAAATTTGAATAAATAATAT
rJMFF005K19+ AGATTTTAAGTTATGTATAATGTTTTGAGTTTTTATGTAATAAATTTGAATAAATAAT
rJMFF020L14+ AGATTTTAAGTTATGTATAATGTTTTGAGTTTTTATGTAATAAATTTGAATAAATAATAT
rJMFF011B11+ AGATTTTAAGTTATGTATAATGTTTTGAGTTTTTATGTAATAAATTTGAATAAATAATAT
rJMFF021A13+ AGATTTTAAGTTATGTATAATGTTTTGAGTTTTTATGTAATAAATTTGAATAAATAAT
rJMFF009M17+ AGATTTTAAGTTATGTATAATGTTTTGAGTTTTTATGTAATAAATTTGAATAAATAATAT
                      ____________________________________________________________
consensus AGATTTTAAGTTATGTATAATGTTTTGAGTTTTTATGTAATAAATTTGAATAAATAATAT
 
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rJMSF026E11+ AGTTTTTTAAGTAGCATCTAA
rJMFF020L14+ AGTTTTTTAAGTAGCATCTAA
rJMFF011B11+ AGTTTTTTAAGTAGCATCTAAATAATAAGTGGCGGGCTCGT
rJMFF009M17+ AGTTTTTTAAGTAGCATCTAAATAATAAGTGGCGGGCTCGTTAATATTAGCTCCAAAAGG
                      ____________________________________________________________
consensus AGTTTTTTAAGTAGCATCTAAATAATAAGTGGCGGGCTCGTTAATATTAGCTCCAAAAGG