clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF005K19 | Sequence | 467 | 008782 (8) | ref|XP_010531526.1| | 6e-85 | PREDICTED: V-type proton ATPase subunit B2 [Tarenaya hassleriana] ref|XP_0105315 | 743 | 002534 (8) | gb|AEZ00886.1| | 2e-95 | putative nucleotide-binding subunit of vacuolar, partial [Elaeis guineensis] |
JMFF009M17 | Sequence | 619 | 008782 (8) | ref|XP_010555212.1| | 356 | PREDICTED: V-type proton ATPase subunit B2-like [Tarenaya hassleriana] ref|XP_01 | 782 | 002534 (8) | gb|AEZ00886.1| | 6e-80 | putative nucleotide-binding subunit of vacuolar, partial [Elaeis guineensis] |
JMFF011B11 | Sequence | 536 | 008782 (8) | gb|KJB39257.1| | 3e-92 | hypothetical protein B456_007G004300 [Gossypium raimondii] | 784 | 002534 (8) | gb|AEZ00886.1| | 3e-93 | putative nucleotide-binding subunit of vacuolar, partial [Elaeis guineensis] |
JMFF020L14 | Sequence | 498 | 008782 (8) | gb|KJB39257.1| | 1e-81 | hypothetical protein B456_007G004300 [Gossypium raimondii] | 768 | 002534 (8) | gb|AEZ00886.1| | 2e-94 | putative nucleotide-binding subunit of vacuolar, partial [Elaeis guineensis] |
JMFF021A13 | Sequence | 472 | 008782 (8) | ref|XP_010555212.1| | 261 | PREDICTED: V-type proton ATPase subunit B2-like [Tarenaya hassleriana] ref|XP_01 | 640 | 002534 (8) | ref|XP_008377719.1| | 6e-69 | PREDICTED: V-type proton ATPase subunit B 2-like [Malus domestica] |
JMFF047G08 | Sequence | 428 | 008782 (8) | emb|CDP14545.1| | 6e-74 | unnamed protein product [Coffea canephora] | 315 | 002534 (8) | ref|XP_008382093.1| | 4e-19 | PREDICTED: V-type proton ATPase subunit B2 [Malus domestica] ref|XP_008382094.1| |
JMSF026E11 | Sequence | 691 | 008782 (8) | ref|XP_010531526.1| | 5e-133 | PREDICTED: V-type proton ATPase subunit B2 [Tarenaya hassleriana] ref|XP_0105315 | 766 | 002534 (8) | gb|AEZ00886.1| | 3e-95 | putative nucleotide-binding subunit of vacuolar, partial [Elaeis guineensis] |
JMSF039B17 | Sequence | 660 | 008782 (8) | ref|XP_007036768.1| | 380 | ATPase, V1 complex, subunit B protein isoform 3 [Theobroma cacao] ref|XP_0070367 | 854 | 002534 (8) | dbj|BAD95251.1| | 7e-131 | vacuolar-type H+-ATPase subunit B2 [Arabidopsis thaliana] |
This contig is upended
. : . : . : . : . : . :
rJMSF039B17+ TGGATATCCTGGTTATATGTATACTGATCTTGCTACAATCTA
____________________________________________________________
consensus TGGATATCCTGGTTATATGTATACTGATCTTGCTACAATCTA
. : . : . : . : . : . :
rJMSF039B17+ TGAGCGGGCTGGGCGTATTGAAGGACGAAAGGGCTCCATTACACAAATTCCAATTCTAAC
____________________________________________________________
consensus TGAGCGGGCTGGGCGTATTGAAGGACGAAAGGGCTCCATTACACAAATTCCAATTCTAAC
. : . : . : . : . : . :
rJMSF039B17+ CATGCCTAATGATGACATTACACATCCCACTCCTGATCTGACTGGTTATATCACTGAAGG
rJMSF026E11+ GATCTGACTGGTTATATCACTGAAGG
rJMFF005K19+ GATCTGACTGGTTATATCACTGAAGG
rJMFF020L14+ GATCTGACTGGTTATATCACTGAAGG
rJMFF011B11+ TCTGACTGGTTATATCACTGAAGG
rJMFF009M17+ GG
____________________________________________________________
consensus CATGCCTAATGATGACATTACACATCCCACTCCTGATCTGACTGGTTATATCACTGAAGG
. : . : . : . : . : . :
rJMSF039B17+ GCAAATATATATTGACAGACAGCTTCATAA-CCGGCAGATATATCCACCAATCAATGTGC
rJMSF026E11+ GCAAATATATATTGACAGACAGCTTCATAA-CCGGCAGATATATCCACCAATCAATGTGC
rJMFF005K19+ GCAAATATATATTGACAGACAGCTTCATAA-CCGGCAGATATATCCACCAATCAATGTGC
rJMFF020L14+ GCAAATATATATNGACAGACAGCTTCATAA-CCGGCAGATATATCCACCAATCAATGTGC
rJMFF011B11+ GCAAATATATATTGACAGACAGCTTCAT-ANCCGGCAGATATATCCACCAATCAATGTGC
rJMFF009M17+ GCAAATATATATTGACAGACAGCTTCATAACCCGGCAGATATATCCACCAATCAATGTGC
____________________________________________________________
consensus GCAAATATATATTGACAGACAGCTTCATAA-CCGGCAGATATATCCACCAATCAATGTGC
. : . : . : . : . : . :
rJMSF039B17+ TTCCATCTTTGTCTCGTTTGATGAAGAGTGCTATTGGTGAAGGTATGACTAGGAGGGATC
rJMSF026E11+ TTCCATCTTTGTCTCGTTTGATGAAGAGTGCTATTGGTGAAGGTATGACTAGGAGGGATC
rJMFF005K19+ TTCCATCTTTGTCTCGTTTGATGAAGAGTGCTATTGGTGAAGGTATGACTAGGAGGGATC
rJMFF020L14+ TTCCATCTTTGTCTCGTTTGATGAAGAGTGCTATTGGTGAAGGTATGACTAGGAGGGATC
rJMFF011B11+ TTCCATCTTTGTCTCGTTTGATGAAGAGTGCTATTGGTGAAGGTATGACTAGGAGGGATC
rJMFF021A13+ TGATGAAGAGTGCTATTGGTGAAGGTATGACTAGGAGGGATC
rJMFF009M17+ TTCCATCTTTGTCTCGTTTGATGAAGAGTGCTATTGGTGAAGGTATGACTAGGAGGGATC
____________________________________________________________
consensus TTCCATCTTTGTCTCGTTTGATGAAGAGTGCTATTGGTGAAGGTATGACTAGGAGGGATC
. : . : . : . : . : . :
rJMSF039B17+ ATTCTGATGTATCAAACCAGCTGTATGCAAATTATGCCATTGGGAAGGATGTCCAGGCAA
rJMSF026E11+ ATTCTGATGTATCAAACCAGCTGTATGCAAATTATGCCATTGGGAAGGATGTCCAGGCAA
rJMFF005K19+ ATTCTGATGTATCAAACCAGCTGTATGCAAATTATGCCATTGGGAAGGATGTCCAGGCAA
rJMFF020L14+ ATTCTGATGTATCAAACCAGCTGTATGCAAATTATGCCATTGGGAAGGATGTCCAGGCAA
rJMFF011B11+ ATTCTGATGTATCAAACCAGCTGTATGCAAATTATGCCATTGGGAAGGATGTCCAGGCAA
rJMFF021A13+ ATTCTGATGTATCAAACCAGCTGTATGCAAATTATGCCATTGGGAAGGATGTCCAGGCAA
rJMFF009M17+ ATTCTGATGTATCAAACCAGCTGTATGCAAATTATGCCATTGGGAAGGATGTCCAGGCAA
____________________________________________________________
consensus ATTCTGATGTATCAAACCAGCTGTATGCAAATTATGCCATTGGGAAGGATGTCCAGGCAA
. : . : . : . : . : . :
rJMSF039B17+ TGAAAGCTGTGGTTGGAGAAGAAGCCCTTTCTTCTGAGGACCTGTTGTATCTCGAGTTTC
rJMSF026E11+ TGAAAGCTGTGGTTGGAGAAGAAGCCCTTTCTTCTGAGGACCTGTTGTATCTCGAGTTTC
rJMFF005K19+ TGAAAGCTGTGGTTGGAGAAGAAGCCCTTTCTTCTGAGGACCTGTTGTATCTCGAGTTTC
rJMFF020L14+ TGAAAGCTGTGGTTGGAGAAGAAGCCCTTTCTTCTGAGGACCTGTTGTATCTCGAGTTTC
rJMFF011B11+ TGAAAGCTGTGGTTGGAGAAGAAGCCCTTTCTTCTGAGGACCTGTTGTATCTCGAGTTTC
rJMFF021A13+ TGAAAGCTGTGGTTGGAGAAGAAGCCCTTTCTTCTGAGGACCTGTTGTATCTCGAGTTTC
rJMFF009M17+ TGAAAGCTGTGGTTGGAGAAGAAGCCCTTTCTTCTGAGGACCTGTTGTATCTCGAGTTTC
____________________________________________________________
consensus TGAAAGCTGTGGTTGGAGAAGAAGCCCTTTCTTCTGAGGACCTGTTGTATCTCGAGTTTC
. : . : . : . : . : . :
rJMSF039B17+ TTGACAAATTCGAGAGGAAGTTTGTTACTCAAGGAGCATATGATACACGCAACATCTTCC
rJMSF026E11+ TTGACAAATTCGAGAGGAAGTTTGTTACTCAAGGAGCATATGATACACGCAACATCTTCC
rJMFF005K19+ TTGACAAATTCGAGAGGAAGTTTGTTACTCAAGGAGCATATGATACACGCAACATCTTCC
rJMFF020L14+ TTGACAAATTCGAGAGGAAGTTTGTTACTCAAGGAGCATATGATACACGCAACATCTTCC
rJMFF011B11+ TTGACAAATTCGAGAGGAAGTTTGTTACTCAAGGAGCATATGATACACGCAACATCTTCC
rJMFF021A13+ TTGACAAATTCGAGAGGAAGTTTGTTACTCAAGGAGCATATGATACACGCAACATCTTCC
rJMFF047G08+ GATACACGCAACATCTTCC
rJMFF009M17+ TTGACAAATTCGAGAGGAAGTTTGTTACTCAAGGAGCATATGATACACGCAACATCTTCC
____________________________________________________________
consensus TTGACAAATTCGAGAGGAAGTTTGTTACTCAAGGAGCATATGATACACGCAACATCTTCC
. : . : . : . : . : . :
rJMSF039B17+ AATCACTTGATTTAGCATGGACACTACTTCGAATTTTCCCCCGTGAGCTTCTTCATCGTA
rJMSF026E11+ AATCACTTGATTTAGCATGGACACTACTTCGAATTTTCCCCCGTGAGCTTCTTCATCGTA
rJMFF005K19+ AATCACTTGATTTAGCATGGACACTACTTCGAATTTTCCCCCGTGAGCTTCTTCATCGTA
rJMFF020L14+ AATCACTTGATTTAGCATGGACACTACTTCGAATTTTCCCCCGTGAGCTTCTTCATCGTA
rJMFF011B11+ AATCACTTGATTTAGCATGGACACTACTTCGAATTTTCCCCCGTGAGCTTCTTCATCGTA
rJMFF021A13+ AATCACTTGATTTAGCATGGACACTACTTCGAATTTTCCCCCGTGAGCTTCTTCATCGTA
rJMFF047G08+ AATCACTTGATTTAGCATGGACACTACTTCGAATTTTCCCCCGTGAGCTTCTTCATCGTA
rJMFF009M17+ AATCACTTGATTTAGCATGGACACTACTTCGAATTTTCCCCCGTGAGCTTCTTCATCGTA
____________________________________________________________
consensus AATCACTTGATTTAGCATGGACACTACTTCGAATTTTCCCCCGTGAGCTTCTTCATCGTA
. : . : . : . : . : . :
rJMSF039B17+ TCCCAGCAAAGACCCTGGATCTATTCTACAGCAGAGACACAGCTAGTTAAGGGTTAGAGA
rJMSF026E11+ TCCCAGCAAAGACCCTGGATCTATTCTACAGCAGAGACACAGCTAGTTAAGGGTTAGAGA
rJMFF005K19+ TCCCAGCAAAGACCCTGGATCTATTCTACAGCAGAGACACAGCTAGTTAAGGGTTAGAGA
rJMFF020L14+ TCCCAGCAAAGACCCTGGATCTATTCTACAGCAGAGACACAGCTAGTTAAGGGTTAGAGA
rJMFF011B11+ TCCCAGCAAAGACCCTGGATCTATTCTACAGCAGAGACACAGCTAGTTAAGGGTTAGAGA
rJMFF021A13+ TCCCAGCAAAGACCCTGGATCTATTCTACAGCAGAGACACAGCTAGTTAAGGGTTAGAGA
rJMFF047G08+ TCCCAGCAAAGACCCTGGATCTATTCTACAGCAGAGACACAGCTAGTTAAGGGTTAGAGA
rJMFF009M17+ TCCCAGCAAAGACCCTGGATCTATTCTACAGCAGAGACACAGCTAGTTAAGGGTTAGAGA
____________________________________________________________
consensus TCCCAGCAAAGACCCTGGATCTATTCTACAGCAGAGACACAGCTAGTTAAGGGTTAGAGA
. : . : . : . : . : . :
rJMSF039B17+ GCTTTGTACTCTAGATTATCTGCTGTGTGATTGCCTGCCTTGCTTGAGCGTTACTTTATG
rJMSF026E11+ GCTTTGTACTCTAGATTATCTGCTGTGTGATTGCCTGCCTTGCTTGAGCGTTACTTTATG
rJMFF005K19+ GCTTTGTACTCTAGATTATCTGCTGTGTGATTGCCTGCCTTGCTTGAGCGTTACTTTATG
rJMFF020L14+ GCTTTGTACTCTAGATTATCTGCTGTGTGATTGCCTGCCTTGCTTGAGCGTTACTTTATG
rJMFF011B11+ GCTTTGTACTCTAGATTATCTGCTGTGTGATTGCCTGCCTTGCTTGAGCGTTACTTTATG
rJMFF021A13+ GCTTTGTACTCTAGATTATCTGCTGTGTGATTGCCTGCCTTGCTTGAGCGTTACTTTATG
rJMFF047G08+ GCTTTGTACTCTAGATTATCTGCTGTGTGATTGCCTGCCTTGCTTGAGCGTTACTTTATG
rJMFF009M17+ GCTTTGTACTCTAGATTATCTGCTGTGTGATTGCCTGCCTTGCTTGAGCGTTACTTTATG
____________________________________________________________
consensus GCTTTGTACTCTAGATTATCTGCTGTGTGATTGCCTGCCTTGCTTGAGCGTTACTTTATG
. : . : . : . : . : . :
rJMSF039B17+ GTGCTTTCTTAGCTTGTCGATCTCTTTCTCGTTCAATAATAAAAGCTTTCTTATAAAATG
rJMSF026E11+ GTGCTTTCTTAGCTTGTCGATCTCTTTCTCGTTCAATAATAAAAGCTTTCTTATAAAATG
rJMFF005K19+ GTGCTTTCTTAGCTTGTCGATCTCTTTCTCGTTCAATAATAAAAGCTTTCTTATAAAATG
rJMFF020L14+ GTGCTTTCTTAGCTTGTCGATCTCTTTCTCGTTCAATAATAAAAGCTTTCTTATAAAATG
rJMFF011B11+ GTGCTTTCTTAGCTTGTCGATCTCTTTCTCGTTCAATAATAAAAGCTTTCTTATAAAATG
rJMFF021A13+ GTGCTTTCTTAGCTTGTCGATCTCTTTCTCGTTCAATAATAAAAGCTTTCTTATAAAATG
rJMFF047G08+ GTGCTTTCTTAGCTTGTCGATCTCTTTCTCGTTCAATAATAAAAGCTTTCTTAT
rJMFF009M17+ GTGCTTTCTTAGCTTGTCGATCTCTTTCTCGTTCAATAATAAAAGCTTTCTTATAAAATG
____________________________________________________________
consensus GTGCTTTCTTAGCTTGTCGATCTCTTTCTCGTTCAATAATAAAAGCTTTCTTATAAAATG
. : . : . : . : . : . :
rJMSF039B17+ AGTGTACGAGCTCTTCTACGGCGTTAAGACACACATTCATATTCTTTGAGACCCAGTTAA
rJMSF026E11+ AGTGTACGAGCTCTTCTACGGCGTTAAGACACACATTCATATTCTTTGAGACCCAGTTAA
rJMFF005K19+ AGTGTACGAGCTCTTCTACGGCGTTAAGACACACATTCATATTCTTTGAGACCCAGTTAA
rJMFF020L14+ AGTGTACGAGCTCTTCTACGGCGTTAAGACACACATTCATATTCTTTGAGACCCAGTTAA
rJMFF011B11+ AGTGTACGAGCTCTTCTACGGCGTTAAGACACACATTCATATTCTTTGAGACCCAGTTAA
rJMFF021A13+ AGTGTACGAGCTCTTCTACGGCGTTAAGACACACATTCATATTCTTTGAGACCCAGTTAA
rJMFF009M17+ AGTGTACGAGCTCTTCTACGGCGTTAAGACACACATTCATATTCTTTGAGACCCAGTTAA
____________________________________________________________
consensus AGTGTACGAGCTCTTCTACGGCGTTAAGACACACATTCATATTCTTTGAGACCCAGTTAA
. : . : . : . : . : . :
rJMSF039B17+ ATTATGTAATCCGTTTCTTATTTTTATTTGGTTTGATTGTGACAGTCCATATGTATTAGT
rJMSF026E11+ ATTATGTAATCCGTTTCTTATTTTTATTTGGTTTGATTGTGACAGTCCATATGTATTAGT
rJMFF005K19+ ATTATGTAATCCGTTTCTTATTTTTATTTGGTTTGATTGTGACAGTCCATATGTATTAGT
rJMFF020L14+ ATTATGTAATCCGTTTCTTATTTTTATTTGGTTTGATTGTGACAGTCCATATGTATTAGT
rJMFF011B11+ ATTATGTAATCCGTTTCTTATTTTTATTTGGTTTGATTGTGACAGTCCATATGTATTAGT
rJMFF021A13+ ATTATGTAATCCGTTTCTTATTTTTATTTGGTTTGATTGTGACAGTCCATATGTATTAGT
rJMFF009M17+ ATTATGTAATCCGTTTCTTATTTTTATTTGGTTTGATTGTGACAGTCCATATGTATTAGT
____________________________________________________________
consensus ATTATGTAATCCGTTTCTTATTTTTATTTGGTTTGATTGTGACAGTCCATATGTATTAGT
. : . : . : . : . : . :
rJMSF039B17+ AGATTTTAAGTTATGTATAATGTTTTGAGTTTT
rJMSF026E11+ AGATTTTAAGTTATGTATAATGTTTTGAGTTTTTATGTAATAAATTTGAATAAATAATAT
rJMFF005K19+ AGATTTTAAGTTATGTATAATGTTTTGAGTTTTTATGTAATAAATTTGAATAAATAAT
rJMFF020L14+ AGATTTTAAGTTATGTATAATGTTTTGAGTTTTTATGTAATAAATTTGAATAAATAATAT
rJMFF011B11+ AGATTTTAAGTTATGTATAATGTTTTGAGTTTTTATGTAATAAATTTGAATAAATAATAT
rJMFF021A13+ AGATTTTAAGTTATGTATAATGTTTTGAGTTTTTATGTAATAAATTTGAATAAATAAT
rJMFF009M17+ AGATTTTAAGTTATGTATAATGTTTTGAGTTTTTATGTAATAAATTTGAATAAATAATAT
____________________________________________________________
consensus AGATTTTAAGTTATGTATAATGTTTTGAGTTTTTATGTAATAAATTTGAATAAATAATAT
. : . : . : . : . : . :
rJMSF026E11+ AGTTTTTTAAGTAGCATCTAA
rJMFF020L14+ AGTTTTTTAAGTAGCATCTAA
rJMFF011B11+ AGTTTTTTAAGTAGCATCTAAATAATAAGTGGCGGGCTCGT
rJMFF009M17+ AGTTTTTTAAGTAGCATCTAAATAATAAGTGGCGGGCTCGTTAATATTAGCTCCAAAAGG
____________________________________________________________
consensus AGTTTTTTAAGTAGCATCTAAATAATAAGTGGCGGGCTCGTTAATATTAGCTCCAAAAGG