| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004C24 | Sequence | 617 | 000598 (9) | ref|XP_011102070.1| | 9e-64 | PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein | 733 | 002506 (4) | ref|XP_006358077.1| | 8e-97 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 |
| JMSF006D02 | Sequence | 371 | 017747 | 180 | 002506 (4) | ref|XP_006495027.1| | 3e-27 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 | |||
| JMSF006F04 | Sequence | 410 | 000598 (9) | ref|XP_009600348.1| | 6e-43 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 | 281 | 002506 (4) | ref|XP_008349229.1| | 1e-23 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 |
| JMSF047N19 | Sequence | 625 | 022245 | emb|CDO96888.1| | 2e-58 | unnamed protein product [Coffea canephora] | 764 | 002506 (4) | ref|XP_006358077.1| | 4e-108 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 |
This contig is upended
. : . : . : . : . : . :
rJMSF047N19+ GTATGAGTACTTGGAAACCATAGTCTT
____________________________________________________________
consensus GTATGAGTACTTGGAAACCATAGTCTT
. : . : . : . : . : . :
rJMSF047N19+ GCCCATGCACTTTTTGGTCCAGAAGATTGTCAGCTAAAATTAGATTGGGCTACTAGACAA
rJMFF004C24+ GGCTACTAGACAA
____________________________________________________________
consensus GCCCATGCACTTTTTGGTCCAGAAGATTGTCAGCTAAAATTAGATTGGGCTACTAGACAA
. : . : . : . : . : . :
rJMSF047N19+ AGAATTGGTATCGGTATTGCAAAAGGTTTAGCTTTTCTGCATGAAGAATCAGAAATAAAG
rJMFF004C24+ AGAATTTGTATCGGTATTGCAAAAGGTTTAGCTTTTCTGCATGAAGAATCAGAAATAAAG
____________________________________________________________
consensus AGAATTTGTATCGGTATTGCAAAAGGTTTAGCTTTTCTGCATGAAGAATCAGAAATAAAG
. : . : . : . : . : . :
rJMSF047N19+ ATTGTTCATAGAGACATTAAATCGACCAATGTGCTTCTCGACAAAGAACTCAATCCGAAA
rJMFF004C24+ ATTGTTCATAGAGACATTAAATCGACCAATGTGCTTCTCGACAAAGAACTCAATCCGAAA
____________________________________________________________
consensus ATTGTTCATAGAGACATTAAATCGACCAATGTGCTTCTCGACAAAGAACTCAATCCGAAA
. : . : . : . : . : . :
rJMSF006F04+ AAACATGATGATGNTGATGATGAGANGACACACATTNGC
rJMSF006D02+ ATGATGATGAGAAGACACACATTAGC
rJMSF047N19+ ATTTCTGACTTTGGTCTAGCAAAACATGATGATGATGACGAAGAGAAGACACACATTAGC
rJMFF004C24+ ATTTCTGACTTTGGTCTAGCAAAACATGATGATGATGACGAAGAGAAGACACACATTAGC
____________________________________________________________
consensus ATTTCTGACTTTGGTCTAGCAAAACATGATGATGATGATGATGAGAAGACACACATTAGC
. : . : . : . : . : . :
rJMSF006F04+ NCAAGAGTTGCTGGGACAATAGNATACATGNCTCCTGAATATGCATTGTGGGGTTACTTA
rJMSF006D02+ ACAAGAGTTGCTGGGACAATAGGATACATGNTTCCTGAATATGCATTGTGGGGTTACTTA
rJMSF047N19+ ACAAGAGTTGCTGGGACAGTAGGATACATGGCTCCTGAATATGCATTGTGGGGCTACTTA
rJMFF004C24+ ACAAGAGTTGCTGGGACGGTAGGATACATGGCTCCTGAATATGCATTGTGGGGCTACTTA
____________________________________________________________
consensus ACAAGAGTTGCTGGGACAGTAGGATACATGGCTCCTGAATATGCATTGTGGGGTTACTTA
. : . : . : . : . : . :
rJMSF006F04+ NCATTCAAAGCTGATGTCTATAGGTTCGGTGTGGTGGCTCNGGAAATNGTNGCGGGGAAA
rJMSF006D02+ ACATTCAAAGCTGATGTCTATAGTTTCGGTGTGGTG
rJMSF047N19+ ACATTCAAAGCTGATGTCTATAGTTTCGGAGTGGTGGCTCTAGAAATTGTTGCAGGGAAG
rJMFF004C24+ ACATTCAAAGCTGATGTCTATAGTTTCGGAGTGGTGGCTCTAGAAATTGTTGCAGGGAAG
____________________________________________________________
consensus ACATTCAAAGCTGATGTCTATAGTTTCGGTGTGGTGGCTCTAGAAATTGTTGCAGGGAAG
. : . : . : . : . : . :
rJMSF006F04+ AACAACGTGAAGTATCGTTCCGATGA
rJMSF047N19+ AACAACGTGAAGTATCGTTCCGATGATGAGAACTGTGTTTGCCTCCTTGATTGGGCACTT
rJMFF004C24+ AACAACGTGAAGTATCGTTCCGATGATGAGAACTGTGTTTGCCTCCTTGATTGGGCACTT
____________________________________________________________
consensus AACAACGTGAAGTATCGTTCCGATGATGAGAACTGTGTTTGCCTCCTTGATTGGGCACTT
. : . : . : . : . : . :
rJMSF047N19+ GATCTTCAAAAGAAAGGGAATCTAATAGAGCTAATGGATCCAAGACTGGGTTCTAATTAT
rJMFF004C24+ GATCTTCAAAAGAAAGGGAATCTAATAGAGCTAATGGATCCAAGACTGGGTTCTAATTAT
____________________________________________________________
consensus GATCTTCAAAAGAAAGGGAATCTAATAGAGCTAATGGATCCAAGACTGGGTTCTAATTAT
. : . : . : . : . : . :
rJMSF047N19+ GACAAAGAAGGGGCACTCAGAATGATCAAAGTGGCTTTGCTTTGTACTAATCCTTCTCCA
rJMFF004C24+ GACAAAGAAGGGGCACTCAGAATGATCAAAGTGGCTTTGCTTTGTACTAATCCTTCTCCA
____________________________________________________________
consensus GACAAAGAAGGGGCACTCAGAATGATCAAAGTGGCTTTGCTTTGTACTAATCCTTCTCCA
. : . : . : . : . : . :
rJMSF047N19+ GTCCTTCGGCCATCCATGTCTGCAGTAGTCAAAATGCTTGAAGGCCATGATGATATTCTT
rJMFF004C24+ GTCCTTCGGCCATCCATGTCTGCAGTAGTCAAAATGCTTGAAGGCCATGATGATATTCTT
____________________________________________________________
consensus GTCCTTCGGCCATCCATGTCTGCAGTAGTCAAAATGCTTGAAGGCCATGATGATATTCTT
. : . : . : . : . : . :
rJMSF047N19+ GAGTACAAATCTGATCTACATGAATTCAATTTTCAAGCAATGAGAGATCGTTATGATGAA
rJMFF004C24+ GAGTACAAATCTGATCTACATGAATTCAATTTTCAAGCAATGAGAGATCGTTATGATGAA
____________________________________________________________
consensus GAGTACAAATCTGATCTACATGAATTCAATTTTCAAGCAATGAGAGATCGTTATGATGAA
. : . : . : . : . : . :
rJMSF047N19+ ATGACAGTTCGCTCAAGTGATTCT
rJMFF004C24+ ATGACAGTTCGCTCAAGTGATTCTTCTAGCAAAGTAGGTTTTTCTTCACCATATGCAAAT
____________________________________________________________
consensus ATGACAGTTCGCTCAAGTGATTCTTCTAGCAAAGTAGGTTTTTCTTCACCATATGCAAAT
. : . : . : . : . : . :
rJMFF004C24+ TAATAGTGGAAATATATTAATATATGCATCCAAAAAATACAATAAATTGTACTTTAAATT
____________________________________________________________
consensus TAATAGTGGAAATATATTAATATATGCATCCAAAAAATACAATAAATTGTACTTTAAATT