| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002K10 | Sequence | 560 | 005095 (5) | ref|XP_006344882.1| | 3e-75 | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Solanum tuberosum] | 737 | 002503 (5) | ref|XP_006344882.1| | 7e-10 | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Solanum tuberosum] |
| JMFF005L03 | Sequence | 479 | 005095 (5) | ref|XP_006344882.1| | 8e-58 | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Solanum tuberosum] | 299 | 002503 (5) | |||
| JMSF017A13 | Sequence | 763 | 002503 (5) | ref|XP_006352533.1| | 8e-16 | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Solanum tuberosum] | |||||
| JMSF017E04 | Sequence | 239 | 005095 (5) | ref|XP_009790873.1| | 6e-09 | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like isoform X2 [Nicotiana | 790 | 002503 (5) | ref|XP_006352533.1| | 1e-20 | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Solanum tuberosum] |
| JMSF023O11 | Sequence | 664 | 005095 (5) | ref|XP_006352343.1| | 2e-66 | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Solanum tuberosum] | 779 | 002503 (5) | ref|XP_006352533.1| | 1e-17 | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF017E04+ GATTAGGGGCG
____________________________________________________________
consensus GATTAGGGGCG
. : . : . : . : . : . :
rJMSF017E04+ AAGAAAGCAATTATGGGCTGGATCCGGAGGACTTGGAAGAAATAATATAGCAGGTGTTGC
rJMSF017A13+ TATAGCAGGTGNTGC
rJMSF023O11+ AGAAATAATATAGCAGGTGGTGC
____________________________________________________________
consensus AAGAAAGCAATTATGGGCTGGATCCGGAGGACTTGGAAGAAATAATATAGCAGGTGTTGC
. : . : . : . : . : . :
rJMSF017E04+ CACAGCATCACCATTTACTGCATCTAGTGGTGCTTACGAGGGGTCTTATGGGGATTTCGA
rJMSF017A13+ CACAGCATCACCATTTACTGCATCTAGTGGTGCTTACGAGGGGTCTTATGGGGATTTCGA
rJMSF023O11+ CACAGCATCACCATTTACTGCATCTAGTGGTGCTTACGAGGGGTCTTATGGGGATTTCGA
rJMFF002K10+ TCTTATGGGGATTTCGA
____________________________________________________________
consensus CACAGCATCACCATTTACTGCATCTAGTGGTGCTTACGAGGGGTCTTATGGGGATTTCGA
. : . : . : . : . : . :
rJMSF017E04+ TCGTGGTGCTTCGATGTACGGTGATCCAACTTGGCAAGCTGTATCTTCTGACCCGGATGC
rJMSF017A13+ TCGTGGTGCTTCGANGTACGGTGATCCAACTTGGCAAGCTGTATCTTCTGACCCGGATGC
rJMSF023O11+ TCGTGGTGCTTCGATGTACGGTGATCCAACTTGGCAAGCTGTATCTTCTGACCCGGATGC
rJMFF002K10+ TCGTGGTGCTTCGATGTACGGTGATCCAACTTGGCAAGCTGTATCTTCTGACCCGGATGC
____________________________________________________________
consensus TCGTGGTGCTTCGATGTACGGTGATCCAACTTGGCAAGCTGTATCTTCTGACCCGGATGC
. : . : . : . : . : . :
rJMSF017E04+ TTCTGCTGCTTTTGGATATGGACTCAGAAGTTCCGGAGATGCTTCTGCCAACTCTGAAGG
rJMSF017A13+ TTCTGCTGCTTTTGGATATGGACTCAGAAGTTCCGGAGATGCTTCTGCCAACTCTGAAGG
rJMSF023O11+ TTCTGCTGCTTTTGGATATGGACTCAGAAGTTCCGGAGATGCTTCTGCCAACTCTGAAGG
rJMFF002K10+ TTCTGCTGCTTTTGGATATGGACTCAGAAGTTCCGGAGATGCTTCTGCCAACTCTGAAGG
____________________________________________________________
consensus TTCTGCTGCTTTTGGATATGGACTCAGAAGTTCCGGAGATGCTTCTGCCAACTCTGAAGG
. : . : . : . : . : . :
rJMSF017E04+ TTATGTTGGAGGCTATAGTATTGCAAATAGAGGAATCGCAGCATAGGTTTTCATTATTTG
rJMSF017A13+ TTATGTTGGAGGCTATAGTATTGCAAATAGAGGAATCGCAGCATAGGTTTTCATTATTTG
rJMSF023O11+ TTATGTTGGAGGCTATAGTATTGCAAATAGAGGAATCGCAGCATAGGTTTTCATTATTTG
rJMFF002K10+ TTATGTTGGAGGCTATAGTATTGCAAATAGAGGAATCGCAGCATAGGTTTTCATTATTTG
____________________________________________________________
consensus TTATGTTGGAGGCTATAGTATTGCAAATAGAGGAATCGCAGCATAGGTTTTCATTATTTG
. : . : . : . : . : . :
rJMSF017E04+ GATACATGAAATTAATGTTTAGGAGAAGGGACTGCAATGAGAGACGCGGGTCTTGAATAT
rJMSF017A13+ GATACATGAAATTAATGTTTAGGAGAAGGGACTGCAATGAGAGACGCGGGTCTTGAATAT
rJMSF023O11+ GATACATGAAATTAATGTTTGGGAGAAGGGACTGCAATGAGAGACGCGGGTCTTGAATAT
rJMFF002K10+ GATACATGAAATTAATGTTTAGGAGAAGGGACTGCAATGAGAGACGCGGGTCTTGAATAT
____________________________________________________________
consensus GATACATGAAATTAATGTTTAGGAGAAGGGACTGCAATGAGAGACGCGGGTCTTGAATAT
. : . : . : . : . : . :
rJMSF017E04+ CTATTATCATATCCCTCTCGGGAATACAAGGAAAATTGATAGTGCAGAGCTAACAGTGGC
rJMSF017A13+ CTATTATCATATCCCTCTCGGGAATACAAGGAAAATTGATAGTGCAGAGCTAACAGTGGC
rJMSF023O11+ CTATTATCATATCCCTCTCGGGAATACAAGGAAAATTGATAGTGCAGAGCTAACAGTGGC
rJMFF002K10+ CTATTATCATATCCCTCTCGGGAATACAAGGAAAATTGATAGTGCAGAGCTAACAGTGGC
____________________________________________________________
consensus CTATTATCATATCCCTCTCGGGAATACAAGGAAAATTGATAGTGCAGAGCTAACAGTGGC
. : . : . : . : . : . :
rJMSF017E04+ GTCGTCTATAAAAAGGGTGAACATACAGACATTCAGAGAGAGCAAAGTTAAGGGATTTTT
rJMSF017A13+ GTCGTCTATAAAAAGGGTGAACATACAGACATTCAGAGAGAGCAAAGTTAAGGGATTTTT
rJMSF023O11+ GTCGTCTATAAAAAGGGTGAACATACAGACATTCAGAGAGAGCAAAGTTAAGGGATTTTT
rJMFF005L03+ CAGAGAGAGCAAAGTTAAGGGANNNTT
rJMFF002K10+ GTCGTCTATAAAAAGGGTGAACATACAGACATTCAGAGAGAGCAAAGTTAAGGGATTTTT
____________________________________________________________
consensus GTCGTCTATAAAAAGGGTGAACATACAGACATTCAGAGAGAGCAAAGTTAAGGGATTTTT
. : . : . : . : . : . :
rJMSF017E04+ GTTTTAAAGTTTCGATTTTTAGTTCCGTTATCAGCATTTAATGATGTAAATCGAACTGGA
rJMSF017A13+ GTTTTAAAGTTTCGATTTTTAGTTCCGTTATCAGCATTTAATGATGTAAATCGAACTGGA
rJMSF023O11+ GTTTTAAAGTTTCGATTTTTAGTTCCGTTATCAGCATTTAATGATGTAAATCGAACTGGA
rJMFF005L03+ GTTNTAAAGTTTCGATTNTTAGTTCCGNTATCAGCATCTAATGATGTAAATNGNANTGGA
rJMFF002K10+ GTTTTAAAGTTTCGATTTTTAGTTCCGTTATCAGCATTTAATGATGTAAATCGAACTGGA
____________________________________________________________
consensus GTTTTAAAGTTTCGATTTTTAGTTCCGTTATCAGCATTTAATGATGTAAATCGAACTGGA
. : . : . : . : . : . :
rJMSF017E04+ AGATAGACTCATCACGGCCGATGTGCTGCTTATGAAGAAACAGGCGAGTACCCCCGGTAC
rJMSF017A13+ AGATAGACTCATCACGGCCGATGTGCTGCTTATGAAGAAACAGGCGAGTACCCCCGGTAC
rJMSF023O11+ AGATAGACTCATCACGGCCGATGTGCTGCTTATGAAGAAACAGGCGAGTACCCCCGGTAC
rJMFF005L03+ AGATAGNCTCATCACGGCCGATGTGCTGCTTATGAAGAAACAGNCGAGTACCCCCGGTAC
rJMFF002K10+ AGATAGACTCATCACGGCCGATGTGCTGCTTATGAAGAAACAGGCGAGTACCCCCGGTAC
____________________________________________________________
consensus AGATAGACTCATCACGGCCGATGTGCTGCTTATGAAGAAACAGGCGAGTACCCCCGGTAC
. : . : . : . : . : . :
rJMSF017E04+ AGCATTTAGAGGTAGATTATTTTGATTACATATTCATTTTTTGTTTTTGTTATTTTATTT
rJMSF017A13+ AGCATTTAGAGGTAGATTATTTTGATTACATATTCATNTTTTGTTTTCGTTATTTTATTT
rJMSF023O11+ AGCATTTAGAGGTAGATTATTTTGATTACATATTCATTTTTTGTTTTTGTTATTTTATTT
rJMFF005L03+ AGCATNTAGAGGTAGATTATTNTGATTACATATTCATCNTTTGTTNTTGTTATTATATTN
rJMFF002K10+ AGCATTTAGAGGTAGATTATTTTGATTACATATTCATTTTTTGTTTTTGTTATTTTATTT
____________________________________________________________
consensus AGCATTTAGAGGTAGATTATTTTGATTACATATTCATTTTTTGTTTTTGTTATTTTATTT
. : . : . : . : . : . :
rJMSF017E04+ TGTCTAAAACTTATTGTCCATTCTAGTGATCATACCAGACCAGCAAAGTTTGGTATTTGT
rJMSF017A13+ TGTCTAAAACTTATTGTCCATTCTAGTGATCATACCAGACCAGCAAAGTTNGGTATTTGT
rJMSF023O11+ TGTCTAAAACTTATTGTCCATTCTAGTGATCATACCAGACCAGCAAAGTTTGGTATTTGT
rJMFF005L03+ TGTCTAAAACTTATTGTCCATNNTAGTGATCATNCCAGCCCAGCAAAGTNTGGTANTNGT
rJMFF002K10+ TGTCTAAAACTTATTGTCCATTCTAGTGATCATACCAGACCAGCAAAGTTTGGTATTTGT
____________________________________________________________
consensus TGTCTAAAACTTATTGTCCATTCTAGTGATCATACCAGACCAGCAAAGTTTGGTATTTGT
. : . : . : . : . : . :
rJMSF017E04+ TTGTGGTTGCTGCTTATTATTATAGTTTTGTCTCTGGGATTGTTTGTGCCAGAGAGTGT
rJMSF017A13+ TTGTGGTTGCTGCTTATTATTATAGTTTTGTCTCTGGGANNGTTTGTGCCAGNGAGTGTT
rJMSF023O11+ TTGTGGTTGCTGCTTATTATTATAGTTTTGTCTCTGGGATTGTTTGTGCCAGAGAGTGTT
rJMFF005L03+ TTGTGGTTGCTGCTTATTATTATAGTNTTGTC
rJMFF002K10+ TTGTGGTTGCTGCTTATTATTATAGTTTTGTCTCTGGGATTGTTTGTGCCAGAGAGTGTT
____________________________________________________________
consensus TTGTGGTTGCTGCTTATTATTATAGTTTTGTCTCTGGGATTGTTTGTGCCAGAGAGTGTT
. : . : . : . : . : . :
rJMSF017A13+ TGATTTATA
rJMSF023O11+ TGATTTATA
rJMFF002K10+ TGATTTATAAGTGTGGAAGAAGGGATACCATTTAGGGTCCCCATGAAGAAAAAAGACTCA
____________________________________________________________
consensus TGATTTATAAGTGTGGAAGAAGGGATACCATTTAGGGTCCCCATGAAGAAAAAAGACTCA