| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF030C08 | Sequence | 549 | 002483 (10) | ref|XP_009798582.1| | 1e-23 | PREDICTED: LOW QUALITY PROTEIN: probable cadmium/zinc-transporting ATPase HMA1, | |||||
| JMFS001C11 | Sequence | 585 | 002483 (10) | ref|XP_009798582.1| | 1e-31 | PREDICTED: LOW QUALITY PROTEIN: probable cadmium/zinc-transporting ATPase HMA1, | |||||
| JMSF006D03 | Sequence | 351 | 002483 (10) | 443 | 023437 | emb|CDP01572.1| | 5e-29 | unnamed protein product [Coffea canephora] | |||
| JMSF009A14 | Sequence | 223 | 002483 (10) | ||||||||
| JMSF025M16 | Sequence | 680 | 002483 (10) | ref|XP_009798582.1| | 1e-27 | PREDICTED: LOW QUALITY PROTEIN: probable cadmium/zinc-transporting ATPase HMA1, | 687 | 004358 (5) | ref|XP_004231883.1| | 4e-70 | PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Solan |
| JMSF025N11 | Sequence | 692 | 002483 (10) | gb|AHW50672.1| | 9e-87 | cadmium/zinc-transporting ATPase HMA1 [Nicotiana tabacum] | 148 | 017155 | |||
| JMSF041L11 | Sequence | 802 | 002483 (10) | gb|AHW50672.1| | 3e-66 | cadmium/zinc-transporting ATPase HMA1 [Nicotiana tabacum] | 637 | 004358 (5) | ref|XP_002278549.1| | 7e-22 | PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic isofor |
| JMSF051J11 | Sequence | 692 | 002483 (10) | ref|XP_009798582.1| | 1e-17 | PREDICTED: LOW QUALITY PROTEIN: probable cadmium/zinc-transporting ATPase HMA1, | 721 | 004358 (5) | ref|XP_004231883.1| | 5e-53 | PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Solan |
| JMSF051N03 | Sequence | 682 | 002483 (10) | ref|XP_009798582.1| | 6e-15 | PREDICTED: LOW QUALITY PROTEIN: probable cadmium/zinc-transporting ATPase HMA1, | 735 | 004358 (5) | ref|XP_004231883.1| | 4e-57 | PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Solan |
| JMSF052J02 | Sequence | 671 | 002483 (10) | ref|XP_009798582.1| | 8e-39 | PREDICTED: LOW QUALITY PROTEIN: probable cadmium/zinc-transporting ATPase HMA1, | 458 | 004358 (5) | |||
This contig is upended
. : . : . : . : . : . :
JMSF025N11+ AAAAACTTCACAATCCACCGGCACAGACTCACCAGCTTG
____________________________________________________________
consensus AAAAACTTCACAATCCACCGGCACAGACTCACCAGCTTG
. : . : . : . : . : . :
JMSF025N11+ GACCAATATAAATGAGCCAACCTTCAAGTCACTGACAGGGACCTTTTGATATCTCAAGTC
____________________________________________________________
consensus GACCAATATAAATGAGCCAACCTTCAAGTCACTGACAGGGACCTTTTGATATCTCAAGTC
. : . : . : . : . : . :
JMSF025N11+ AGAGAAACTAGGTGAGCTCTCATTATTCACATCCAGCAGAAGAGCAAAGTCTGGATGGTT
JMSF041L11+ ATTATTCACATCCAGCAGAAGAGCAAAGTCTGGATGGTT
____________________________________________________________
consensus AGAGAAACTAGGTGAGCTCTCATTATTCACATCCAGCAGAAGAGCAAAGTCTGGATGGTT
. : . : . : . : . : . :
JMSF025N11+ TTCTTTTAATTCCTTTACATCAACCTTGGAGCATCTTGTGAAGTGCTCCTCAGCAATATG
JMSF041L11+ TTCTTTTAATTCCTTTACATCAACCTTGGAGCATCTTGTGAAGTGCTCCTCAGCAATATG
____________________________________________________________
consensus TTCTTTTAATTCCTTTACATCAACCTTGGAGCATCTTGTGAAGTGCTCCTCAGCAATATG
. : . : . : . : . : . :
JMSF025N11+ AGCCAAATTAAACATTGCCAGAAGCAAGCCACCTTCCAGTGAATTTCCCATGAAAACCGA
JMSF041L11+ AGCCAAATTAAACATTGCCAGAAGCAAGCCACCTTCCAGTGAATTTCCCATGAAAACCGA
JMSF052J02+ CCCATGAAAACCGA
JMSF025M16+ GA
____________________________________________________________
consensus AGCCAAATTAAACATTGCCAGAAGCAAGCCACCTTCCAGTGAATTTCCCATGAAAACCGA
. : . : . : . : . : . :
JMSF025N11+ AGCAAAGCCTGCAAGAGCCATAAGCACATGGATATTGATTTTTCCACCAGCAACATCCAT
JMSF041L11+ AGCAAAGCCTGCAAGAGCCATAAGCACATGGATATTGATTTTTCCACCAGCAACATCCAT
JMFS001C11+ CATGGATATTGATTTTTCCACCAGCAACATCCAT
JMFF030C08+ T
JMSF052J02+ AGCAAAGCCTGCAAGAGCCATAAGCACATGGATATTGATTTTTCCACCAGCAACATCCAT
JMSF025M16+ AGCAAAGCCTGCAAGANCCATAAGCACATGGATATTGA-TTTTCCACCAGCAACATCCAT
____________________________________________________________
consensus AGCAAAGCCTGCAAGAGCCATAAGCACATGGATATTGATTTTTCCACCAGCAACATCCAT
. : . : . : . : . : . :
JMSF025N11+ TAGTGCATCAAGTGAGGCTGAGACCCCGACGAGAGGGAAGGCAATGACAGCGAAGGCACG
JMSF041L11+ TAGTGCATCAAGTGAGGCTGAGACCCCGACGAGAGGGAAGGCAATGACAGCGAAGGCACG
JMFS001C11+ TAGTGCATCAAGTGAGGCTGAGACCCCGACGAGAGGGAAGGCAATGACAGCGAAGGCACG
JMFF030C08+ TAGTGCATCAAGTGAGGCTGAGACCCCGACGAGAGGGAAGGCAATGACAGCGAAGGCACG
JMSF052J02+ TAGTGCATCAAGTGAGGCTGAGACCCCGACGAGAGGGAAGGCAATGACAGCGAAGGCACG
JMSF025M16+ TAGTGCATCAAGTGAGGNTGAGACCCCGACGAGAGGGAAGGCAATGACAGCGAAGGCACG
JMSF051N03+ CAATGACAGCAAAGGCACG
JMSF051J11+ ACGAGAGGGAAGGCAATGACAGCAAAGGCACG
____________________________________________________________
consensus TAGTGCATCAAGTGAGGCTGAGACCCCGACGAGAGGGAAGGCAATGACAGCGAAGGCACG
. : . : . : . : . : . :
JMSF025N11+ CTGGAGAGGCTTCACAGCCGGCTTGGGCAGCACGTAGGGGCAAGCCGCGGCAGCAATGAA
JMSF041L11+ CTGGAGAGGCTTCACAGCCGGCTTGGGCAGCACGTAGGGGCAAGCCGCGGCAGCAATGAA
JMFS001C11+ CTGGAGAGGCTTCACAGCCGGCTTGGGCAGCACGTAGGGGCAAGCCGCGGCAGCAATGAA
JMFF030C08+ CTGGAGAGGCTTCACAGCCGGCTTGGGCAGCACGTAGGGGCAAGCCGCGGCAGCAATGAA
JMSF052J02+ CTGGAGAGGCTTCACAGCCGGCTTGGGCAGCACGTAGGGGCAAGCCGCGGCAGCAATGAA
JMSF025M16+ CTGGAGAGGCTTCACAGCCGGCTTGGGCAGCACGTAGGGGCAAGCCGCGGCAGCAATGAA
JMSF051N03+ CTGGAGAGGCTTCACAGCCGGCTTGGGCAGCACGTAGGGGCAAGCCGCGGCAGCAATGAA
JMSF051J11+ CTGGAGAGGCTTCACAGCCGGCTTGGGCAGCACGTAGGGGCAAGCCGCGGCAGCAATGAA
____________________________________________________________
consensus CTGGAGAGGCTTCACAGCCGGCTTGGGCAGCACGTAGGGGCAAGCCGCGGCAGCAATGAA
. : . : . : . : . : . :
JMSF025N11+ CAAAGCCGCGGAGCTGCAACAGAGCTCGAGATGCTCCCGCAAGAAATTTGCTAAGTGGGA
JMSF041L11+ CAAAGCCGCGGAGCTGCAACAGAGCTCGAGATGCTCCCGCAAGAAATTTGCTAAGTGGGA
JMFS001C11+ CAAAGCCGCGGAGCTGCAACAGAGCTCGAGATGCTCCCGCAAGAAATTTGCTAAGTGGGA
JMFF030C08+ CAAAGCCGCGGAGCTGCAACAGAGCTCGAGATGCTCCCGCAAGAAATTTGCTAAGTGGGA
JMSF052J02+ CAAAGCCGCGGAGCTGCAACAGAGCTCGAGATGCTCCCGCAAGAAATTTGCTAAGTGGGA
JMSF025M16+ CAAAGCCGCGGAGCTGCAACAGAGCTCGAGATGCTCCCGCAAGAAATTTGCTAAGTGGGA
JMSF051N03+ CAAAGCCGCGGAGCTGCAACAGAGCTCGAGATGCTCCCGCAAGAAATTTGCTAAGTGGGA
JMSF051J11+ CAAAGCCGCGGAGCTGCAACAGAGCTCGAGATGCTCCCGCAAGAAATTTGCTAAGTGGGA
____________________________________________________________
consensus CAAAGCCGCGGAGCTGCAACAGAGCTCGAGATGCTCCCGCAAGAAATTTGCTAAGTGGGA
. : . : . : . : . : . :
JMSF025N11+ CCATCTGATCGCGTCGGCGAATTTCAGAAGAACCTCTTGCGGTTTCGTCAGCTGCTCATC
JMSF041L11+ CCATCTGATCGCGTCGGCGAATTTCAGAAGAACCTCTTGCGGTTTCGTCAGCTGCTCATC
JMFS001C11+ CCATCTGATCGCGTCGGCGAATTTCAGAAGAACCTCTTGCGGTTTCGTCAGCTGCTCATC
JMFF030C08+ CCATCTGATCGCGTCGGCGAATTTCAGAAGAACCTCTTGCGGTTTCGTCAGCTGCTCATC
JMSF006D03+ TGCTCATC
JMSF052J02+ CCATCTGATCGCGTCGGCGAATTTCAGAAGAACCTCTTGCGGTTTCGTCAGCTGCTCATC
JMSF025M16+ CCATCTGATCGCGTCGGCGAATTTCAGAAGAACCTCTTGCGGTTTCGTCAGCTGCTCATC
JMSF051N03+ CCATCTGATCGCGTCGGCGAATTTCAGAAGAACCTCTTGCGGTTTCGTCAGCTGCTCATC
JMSF051J11+ CCATCTGATCGCGTCGGCGAATTTCAGAAGAACCTCTTGCGGTTTCGTCAGCTGCTCATC
____________________________________________________________
consensus CCATCTGATCGCGTCGGCGAATTTCAGAAGAACCTCTTGCGGTTTCGTCAGCTGCTCATC
. : . : . : . : . : . :
JMSF025N11+ ATCACTCTCATCGTCTCCATGGTGGTGATGGCGGTGGGCGTGGTTGTGATCGTGGCCGTG
JMSF041L11+ ATCACTCTCATCGTCTCCATGGTGGTGATGGCGGTGGGCGTGGTTGTGATCGTGGCCGTG
JMFS001C11+ ATCACTCTCATCGTCTCCATGGTGGTGATGGCGGTGGGCGTGGTTGTGATCGTGGCCGTG
JMFF030C08+ ATCACTCTCATCGTCTCCATGGTGGTGATGGCGGTGGGCGTGGTTGTGATCGTGGCCGTG
JMSF006D03+ ATCACTCTCATCGTCTCCATGGTGGTGATGGCGGTGGGCGTGGTTGTGATCGTGGCCGTG
JMSF052J02+ ATCACTCTCATCGTCTCCATGGTGGTGATGGCGGTGGGCGTGGTTGTGATCGTGGCCGTG
JMSF025M16+ ATCACTCTCATCGTCTCCATGGTGGTGATGGCGGTGGGCGTGGTTGTGATCGTGGCCGTG
JMSF051N03+ ATCACTCTCATCGTCTCCATGGTGGTGATGGCGGTGGGCGTGGTTGTGATCGTGGCCGTG
JMSF051J11+ ATCACTCTCATCGTCTCCATGGTGGTGATGGCGGTGGGCGTGGTTGTGATCGTGGCCGTG
____________________________________________________________
consensus ATCACTCTCATCGTCTCCATGGTGGTGATGGCGGTGGGCGTGGTTGTGATCGTGGCCGTG
. : . : . : . : . : . :
JMSF025N11+ ATTGTGATTGTGAGCGGAGCAGGAGCTGACGTAGCAGCGGCGGAGATAAGCCG
JMSF041L11+ ATTGTGATTGTGAGCGGAGCAGGAGCTGACGTAGCAGCGGCGGAGATAAGCCGCTCGAGG
JMFS001C11+ ATTGTGATTGTGAGCGGAGCAGGAGCTGACGTAGCAGCGGCGGAGATAAGCCGCTCGAGG
JMFF030C08+ ATTGTGATTGTGAGCGGAGCAGGAGCTGACGTAGCAGCGGCGGAGATAAGCCGCTCGAGG
JMSF006D03+ ATTGTGATTGTGAGCGGAGCAGGAGCTGACGTAGCAGCGGCGGAGATAAGCCGCTCGAGG
JMSF052J02+ ATTGTGATTGTGAGCGGAGCAGGAGCTGACGTAGCAGCGGCGGAGATAAGCCGCTCGAGG
JMSF025M16+ ATTGTGATTGTGAGCGGAGCAGGAGCTGACGTAGCAGCGGCGGAGATAAGCCGCTCGAGG
JMSF051N03+ ATTGTGATTGTGAGCGGAGCAGGAGCTGACGTAGCAGCGGCGGAGATAAGCCGCTCGAGG
JMSF051J11+ ATTGTGATTGTGAGCGGAGCAGGAGCTGACGTAGCAGCGGCGGAGATAAGCCGCTCGAGG
____________________________________________________________
consensus ATTGTGATTGTGAGCGGAGCAGGAGCTGACGTAGCAGCGGCGGAGATAAGCCGCTCGAGG
. : . : . : . : . : . :
JMSF041L11+ CGTTAAAACGAAAGCGGCAGCGCAGCGTGCGGGATAGAGTTGAAGATTCCGGTGCGCCGC
JMFS001C11+ CGTTAAAACGAAAGCGGCAGCGCAGCGTGCGGGATAGAGTTGAAGATTCCGGTGCGCCGC
JMFF030C08+ CGTTAAAACGAAAGCGGCAGCGCAGCGTGCGGGATAGAGTTGAAGATTCCGGTGCGCCGC
JMSF006D03+ CGTTAAAACGAAAGCGGCAGCGCAGCGTGCGGGATAGAGTTGAAGATTCCGGTGCGCCGC
JMSF052J02+ CGTTAAAACGAAAGCGGCAGCGCAGCGTGCGGGATAGAGTTGAAGATTCCGGTGCGCCGC
JMSF025M16+ CGTTAAAACGAAAGCGGCAGCGCAGCGTGCGGGATAGAGTTGAAGATTCCGGTGCGCCGC
JMSF051N03+ CGTTAAAACGAAAGCGGCAGCGCAGCGTGCGGGATAGAGTTGAAGATTCCGGTGCGCCGC
JMSF051J11+ CGTTAAAACGAAAGCGGCAGCGCAGCGTGCGGGATAGAGTTGAAGATTCCGGTGCGCCGC
____________________________________________________________
consensus CGTTAAAACGAAAGCGGCAGCGCAGCGTGCGGGATAGAGTTGAAGATTCCGGTGCGCCGC
. : . : . : . : . : . :
JMSF041L11+ GAGTCGTCGTCTTCGAGTCCGAGTTTTGTAAACGGATAGCTCGAGTTGAGTGAAACTAGC
JMFS001C11+ GAGTCGTCGTCTTCGAGTCCGAGTTTTGTAAACGGATAGCTCGAGTTGAGTGAAACTAGC
JMFF030C08+ GAGTCGTCGTCTTCGAGTCCGAGTTTTGTAAACGGATAGCTCGAGTTGAGTGAAACTAGC
JMSF006D03+ GAGTCGTCGTCTTCGAGTCCGAGTTTTGTAAACGGATAGCTCGAGTTGAGTGAAACTAGC
JMSF052J02+ GAGTCGTCGTCTTCGAGTCCGAGTTTTGTAAACGGATAGCTCGAGTTGAGTGAAACTAGC
JMSF025M16+ GAGTCGTCGTCTTCGAGTCCGAGTTTTGTAAACGGATAGCTCGAGTTGAGTGAAACTAGC
JMSF051N03+ GAGTCGTCGTCTTCGAGTCCGAGTTTTGTAAACGGATAGCTCGAGTTGAGTGAAACTAGC
JMSF009A14+ CTTCGAGTCCGAGTTTTGTAAACGGATAGCTCGAGTTGAGTGAAACTAGC
JMSF051J11+ GAGTCGTCGTCTTCGAGTCCGAGTTTTGTAAACGGATAGCTCGAGTTGAGTGAAACTAGC
____________________________________________________________
consensus GAGTCGTCGTCTTCGAGTCCGAGTTTTGTAAACGGATAGCTCGAGTTGAGTGAAACTAGC
. : . : . : . : . : . :
JMSF041L11+ TTGAAACCGCAAAGCTTCCATTACAGCAACAAATTTGTTCAACAGAGCGAGCAATCACCG
JMFS001C11+ TTGAAACCGCAAAGCTTCCATTACAGCAACAAATTTGTTCAACAGAGCGAGCAATCACCG
JMFF030C08+ TTGAAACCGCAAAGCTTCCATTACAGCAACAAATTTGTTCAACAGAGCGAGCAATCACCG
JMSF006D03+ TTGAAACCGCAAAGCTTCCATTACAGCAACAAATTTGTTCAACAGAGCGAGCAATCACCG
JMSF052J02+ TTGAAACCGCAAAGCTTCCATTACAGCAACAAATTTGTTCAACAGAGCGAGCAATCACCG
JMSF025M16+ TTGAAACCGCAAAGCTTCCATTACAGCAACAAATTTGTTCAACAGAGCGAGCAATCACCG
JMSF051N03+ TTGAAACCGCAAAGCTTCCATTACAGCAACAAATTTGTTCAACAGAGCGAGCAATCACCG
JMSF009A14+ TTGAAACCGCAAAGCTTCCATTACAGCAACAAATTTGTTCAACAGAGCGAGCAATCACCG
JMSF051J11+ TTGAAACCGCAAAGCTTCCATTACAGCAACAAATTTGTTCAACAGAGCGAGCAATCACCG
____________________________________________________________
consensus TTGAAACCGCAAAGCTTCCATTACAGCAACAAATTTGTTCAACAGAGCGAGCAATCACCG
. : . : . : . : . : . :
JMSF041L11+ CTTCTCTGAAAGCATTTGATTTTGTTTACAGAGAAATACACT
JMFS001C11+ CTTCTCTGAAA
JMFF030C08+ CTTCTCT
JMSF006D03+ CTTCTCTGAAAGCATTTGATTTTGTTTACAGAGAAATACACT
JMSF052J02+ CTTCTCTGAAAGCATTTGATTTTGTTTACAGAGAAATACACTGCAAATTTTCGAACA
JMSF025M16+ CTTCTCTGAAAGCATTTGATTTTGTTTACAGAGAAATACACTGCAAATTTTCGAACAAAC
JMSF051N03+ CTTCTCTGAAAGCATTTGATTTTGTTTACAGAGAAATACACTGCAAATTTTCGAACAAAC
JMSF009A14+ CTTCTCTGAAAGCATTTGATTTTGTTTACAGAGAAATACACTGCAAATTTTCGAACAAAC
JMSF051J11+ CTTCTCTGAAAGCATTTGATTTTGTTTACAGAGAAATACACTGCAAATTTTCGAACAAAC
____________________________________________________________
consensus CTTCTCTGAAAGCATTTGATTTTGTTTACAGAGAAATACACTGCAAATTTTCGAACAAAC
. : . : . : . : . : . :
JMSF025M16+ GGAATCGTTCTCTC
JMSF051N03+ GGAATCGTTCTCTCAGACCAGTTGATTGATGACTGCCACAAACAAAGATTTCGTTTTCGG
JMSF009A14+ GGAATCGTTCTCTCAGACCAGTTGATTGATGACTGCCACAAACAAAGATTTC
JMSF051J11+ GGAATCGTTCTCTCAGACCAGTTGATTGATGACTGCCACAAACAAAGATTTCGTTTTCGG
____________________________________________________________
consensus GGAATCGTTCTCTCAGACCAGTTGATTGATGACTGCCACAAACAAAGATTTCGTTTTCGG
. : . : . : . : . : . :
JMSF051N03+ GCACACGACTCCAGCACCAGATGGAGTTAATGGAAGGGGGGGCCTACGGTTAAAGACGCC
JMSF051J11+ GCACACGACTCCAGCACCAGATGGAGTTAATGGAAGGGGGGGCCTACGGTTAAAGACGCC
____________________________________________________________
consensus GCACACGACTCCAGCACCAGATGGAGTTAATGGAAGGGGGGGCCTACGGTTAAAGACGCC