Contig 002440:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006M18Sequence367002440 (5)ref|XP_011098646.1|2e-32PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X2 [Sesamum i795009649 (6)ref|XP_010257893.1|3e-92PREDICTED: polypyrimidine tract-binding protein homolog 1-like isoform X5 [Nelu
JMFF012C19Sequence148002440 (5)365009649 (6)
JMSF021D24Sequence631002440 (5)ref|XP_008379366.1|1e-96PREDICTED: polypyrimidine tract-binding protein homolog 1-like isoform X4 [Malu728009649 (6)ref|XP_010257893.1|7e-64PREDICTED: polypyrimidine tract-binding protein homolog 1-like isoform X5 [Nelu
JMSF030L18Sequence642002440 (5)ref|XP_008379366.1|9e-99PREDICTED: polypyrimidine tract-binding protein homolog 1-like isoform X4 [Malu727009649 (6)ref|XP_010257893.1|7e-64PREDICTED: polypyrimidine tract-binding protein homolog 1-like isoform X5 [Nelu
JMSF047F17Sequence690002440 (5)ref|XP_006431178.1|1e-108hypothetical protein CICLE_v10011680mg [Citrus clementina] ref|XP_006431179.1| h719009907 (8)ref|XP_009767064.1|2e-69PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 2-like [Nicotiana syl

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF047F17+ GCAGTAGCTGCAGTCTCAATATCAGTAAAC
                      ____________________________________________________________
consensus GCAGTAGCTGCAGTCTCAATATCAGTAAAC
 
. : . : . : . : . : . :
JMSF030L18+ CCTGCTGCTTTTTCAAAGGTAGCAATCTTGTGCACAAAACCA
JMSF021D24+ TTCAAAGGTAGCAATCTTGTGCACAAAACCA
JMSF047F17+ TGGACTAAAGCCTGAAATCCTGCTGCTTTTTCAAAGGTAGCAATCTTGTGCACAAAACCA
                      ____________________________________________________________
consensus TGGACTAAAGCCTGAAATCCTGCTGCTTTTTCAAAGGTAGCAATCTTGTGCACAAAACCA
 
. : . : . : . : . : . :
JMSF030L18+ AAGGCCGAAAATACCAAATGAATGACATCAATGCTGACATCACCAGCTTCAACACCCTCA
JMSF021D24+ AAGGCCGAAAATACCAAATGAATGACATCAATGCTGACATCACCAGCTTCAACACCCTCA
JMSF047F17+ AAGGCCGAAAATACCAAATGAATGACATCAATGCTGACATCACCAGCTTCAACACCCTCA
                      ____________________________________________________________
consensus AAGGCCGAAAATACCAAATGAATGACATCAATGCTGACATCACCAGCTTCAACACCCTCA
 
. : . : . : . : . : . :
JMSF030L18+ ATAGTTACCAGCAGAACATTCCCTGGAATATCTCCAGGGCTCTTGTTATTGACAATTTCA
JMSF021D24+ ATAGTTACCAGCAGAACATTCCCTGGAATATCTCCAGGGCTCTTGTTATTGACAATTTCA
JMSF047F17+ ATAGTTACCAGCAGAACATTCCCTGGAATATCTCCAGGGCTCTTGTTATTGACAATTTCA
                      ____________________________________________________________
consensus ATAGTTACCAGCAGAACATTCCCTGGAATATCTCCAGGGCTCTTGTTATTGACAATTTCA
 
. : . : . : . : . : . :
JMSF030L18+ TGCCTGTTCGAATACTGAATATACACAGCTTTGCCACGAATTTGTGCAGGCTCTGAAGAC
JMSF021D24+ TGCCTGTTCGAATACTGAATATACACAGCTTTGCCACGAATTTGTGCAGGCTCTGAAGAC
JMSF047F17+ TGCCTGTTCGAATACTGAATATACACAGCTTTGCCACGAATTTGTGCAGGCTCTGAAGAC
                      ____________________________________________________________
consensus TGCCTGTTCGAATACTGAATATACACAGCTTTGCCACGAATTTGTGCAGGCTCTGAAGAC
 
. : . : . : . : . : . :
JMSF030L18+ GAAGCATAATAGGTGGCCATATTGATAGCTTGATTAAGATCAGCGAATTCGACAAACGCT
JMSF021D24+ GAAGCATAATAGGTGGCCATATTGATAGCTTGATTAAGATCAGCGAATTCGACAAACGCT
JMFF006M18+ CAAACGCT
JMSF047F17+ GAAGCATAATAGGTGGCCATATTGATAGCTTGATTAAGATCAGCGAATTCGACAAACGCT
                      ____________________________________________________________
consensus GAAGCATAATAGGTGGCCATATTGATAGCTTGATTAAGATCAGCGAATTCGACAAACGCT
 
. : . : . : . : . : . :
JMSF030L18+ TGGTTGCGATTGGAGCCAACATTGCACTTAGTGTTAACGATCCTGCCGAAGGGTTTGCAA
JMSF021D24+ TGGTTGCGATTGGAGCCAACATTGCACTTAGTGTTAACGATCCTGCCGAAGGGTTTGCAA
JMFF006M18+ TGGTTGCGATTGGAGCCAACATTGCACTTAGTGTTAACGATCCTGCCGAAGGGTTTGCAA
JMSF047F17+ TGGTTGCGATTGGAGCCAACATTGCACTTAGTGTTAACGATCCTGCCGAAGGGTTTGCAA
                      ____________________________________________________________
consensus TGGTTGCGATTGGAGCCAACATTGCACTTAGTGTTAACGATCCTGCCGAAGGGTTTGCAA
 
. : . : . : . : . : . :
JMSF030L18+ AGCTCGACTAGCTCCTCTTCGATGCACTCCCATGGGAGATTCCGCAGGTGAAGAACCTTC
JMSF021D24+ AGCTCGACTAGCTCCTCTTCGATGCACTCCCATGGGAGATTCCGCAGGTGAAGAACCTTC
JMFF006M18+ AGCTCGACTAGCTCCTCTTCGATGCACTCCCATGGGAGATTCCGCAGGTGAAGAACCTTC
JMSF047F17+ AGCTCGACTAGCTCCTCTTCGATGCACTCCCATGGGAGATTCCGCAGGTGAAGAACCTTC
                      ____________________________________________________________
consensus AGCTCGACTAGCTCCTCTTCGATGCACTCCCATGGGAGATTCCGCAGGTGAAGAACCTTC
 
. : . : . : . : . : . :
JMSF030L18+ GAAGGCGTTTGTGTGTACCGAAACTGGGGCTGCCCCGACGTTGACATCGATCGATTGGAG
JMSF021D24+ GAAGGCGTTTGTGTGTACCGAAACTGGGGCTGCCCCGACGTTGACATCGATCGATTGGAG
JMFF006M18+ GAAGGCGTTTGTGTGTACCGAAACTGGGGCTGCCCCGACGTTGACATCGATCGATTGGAG
JMSF047F17+ GAAGGCGTTTGTGTGTACCGAAACTGGGGCTGCCCCGACGTTGACATCGATCGATTGGAG
                      ____________________________________________________________
consensus GAAGGCGTTTGTGTGTACCGAAACTGGGGCTGCCCCGACGTTGACATCGATCGATTGGAG
 
. : . : . : . : . : . :
JMSF030L18+ TTCCGATTCGGTTCAAGGGTTTTAAGGTCCGAGTCAGGCGACAGGATAACTGAAATCCGC
JMSF021D24+ TTCCGATTCGGTTCAAGGGTTTTAAGGTCCGAGTCAGGCGACAGGATAACTGAAATCCGC
JMFF006M18+ TTCCGATTCGGTTCAAGGGTTTTAAGGTCCGAGTCAGGCGACAGGATAACTGAAATCCGC
JMFF012C19+ CGAGTCAGGNGACAGGATAACTGAAATCCGC
JMSF047F17+ TTCCGATTCGGTTCAAGGGTTTTAAGGTCCGAGTCAGGCGACAGGATAACTGAAATCCGC
                      ____________________________________________________________
consensus TTCCGATTCGGTTCAAGGGTTTTAAGGTCCGAGTCAGGCGACAGGATAACTGAAATCCGC
 
. : . : . : . : . : . :
JMSF030L18+ CGCCGAATACGATGAAACTCCGGTGAAACTAGGTTTTGGTATCGGCTTAGCTGCTGTGGT
JMSF021D24+ CGCCGAATACGATGAAACTCCGGTGAAACTAGGTTTTGGTATCGGCTTAGCTGCTGTGGT
JMFF006M18+ CGCCGAATACGATGAAACTCCGGTGAAACTAGGTTTTGGTATCGGCTTAGCTGCTGTGGT
JMFF012C19+ CGCCGAATACGATGAAACTCCGGTGAAACTAGGTTTTGGTATCGGCTTAGCTGCTGTGGT
JMSF047F17+ CGCCGAATACGATGAAACTCCGGTGAAACTAGGTTTTGGTATCGGCTTAGCTGCTGTGGT
                      ____________________________________________________________
consensus CGCCGAATACGATGAAACTCCGGTGAAACTAGGTTTTGGTATCGGCTTAGCTGCTGTGGT
 
. : . : . : . : . : . :
JMSF030L18+ GGCCTTCTAGAAAAAGAACGGATTTTTTTCCCGACGGGTGTAACAGAAAGAGCATTAC
JMSF021D24+ GGCCTTCTAGAAAAAGAACGGATTTTTTTCCCGACGGGTGTAACAGAAAGAGCATTAC
JMFF006M18+ GGCCTTCTAGAAAAAGAACGGATTTTTTTCCCGACGGGTGTAACAGAAAGAGCATTAC
JMFF012C19+ GGCCTTCTAGAAAAAGAACGGATTTTTTTCCCGACGGGTGTAACAGAAAGAGCATT
JMSF047F17+ GGCCTTCTAGAAAAAGAACGGATTTTTTTCCCGACGGGTGTAACAGAAAGAGCATTACCC
                      ____________________________________________________________
consensus GGCCTTCTAGAAAAAGAACGGATTTTTTTCCCGACGGGTGTAACAGAAAGAGCATTACCC