Contig 002434:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013A23Sequence225002434 (3)585005817 (3)ref|XP_009769741.1|2e-26PREDICTED: chloride channel protein CLC-f-like isoform X1 [Nicotiana sylvestris
JMSF024M03Sequence638002434 (3)ref|XP_009617325.1|1e-35PREDICTED: chloride channel protein CLC-f-like [Nicotiana tomentosiformis]602005817 (3)ref|XP_009617325.1|9e-51PREDICTED: chloride channel protein CLC-f-like [Nicotiana tomentosiformis]
JMSF046J05Sequence722002434 (3)ref|XP_009617325.1|2e-35PREDICTED: chloride channel protein CLC-f-like [Nicotiana tomentosiformis]733005817 (3)ref|XP_009617325.1|3e-64PREDICTED: chloride channel protein CLC-f-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF046J05+                                                                     CC
                      ____________________________________________________________
consensus                                                                       CC
 
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JMSF024M03+                                                        ACTAGACCATGCAGC
JMSF046J05+           CCCTGAGATGAACTGGAGGATTGCTTTATTTGACCCAATATCTCAACTAGACCATGCAGC
                      ____________________________________________________________
consensus             CCCTGAGATGAACTGGAGGATTGCTTTATTTGACCCAATATCTCAACTAGACCATGCAGC
 
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JMSF024M03+           ACGCCAACAATAACTCCACCTAAGACTGGTATTAGAAGAATCCGATGCCATGTGTCTGCT
JMSF046J05+           ACGCCAACAATAACTCCACCTAAGACTGGTATTAGAAGAATCCGATGCCATGTGTCTGCT
                      ____________________________________________________________
consensus             ACGCCAACAATAACTCCACCTAAGACTGGTATTAGAAGAATCCGATGCCATGTGTCTGCT
 
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JMSF024M03+           AGTCTTTGCAAACGAAGCCAAGCAGCACCCTCATTAGGAGTACCAGCCCATGCCCATTCA
JMSF046J05+           AGTCTTTGCAAACGAAGCCAAGCAGCACCCTCATTAGGAGTACCAGCCCATGCCCATTCA
                      ____________________________________________________________
consensus             AGTCTTTGCAAACGAAGCCAAGCAGCACCCTCATTAGGAGTACCAGCCCATGCCCATTCA
 
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JMSF024M03+           TGAATTACATGAACCCCGCGGTTAAACGCGGCAACACAAAGACCAGTAGCGAGGCCAAGG
JMSF046J05+           TGAATTACATGAACCCCGCGGTTAAACGCGGCAACACAAAGACCAGTAGCGAGGCCAAGG
                      ____________________________________________________________
consensus             TGAATTACATGAACCCCGCGGTTAAACGCGGCAACACAAAGACCAGTAGCGAGGCCAAGG
 
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JMSF024M03+           AGACATCCAAGGAGCAGTAAAGCCCACTCCGGCGGGGCGCTATCGCCAAGGACTTCGTCC
JMSF046J05+           AGACATCCAAGGAGCAGTAAAGCCCACTCCGGCGGGGCGCTATCGCCAAGGACTTCGTCC
                      ____________________________________________________________
consensus             AGACATCCAAGGAGCAGTAAAGCCCACTCCGGCGGGGCGCTATCGCCAAGGACTTCGTCC
 
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JMSF024M03+           CCAGCGACAACCCCGTGATCCGAAGGCAACGATGACACCAGAGACGATTGTTCCCCCCTA
JMSF046J05+           CCAGCGACAACCCCGTGATCCGAAGGCAACGATGACACCAGAGACGATTGTTCCCCCCTA
                      ____________________________________________________________
consensus             CCAGCGACAACCCCGTGATCCGAAGGCAACGATGACACCAGAGACGATTGTTCCCCCCTA
 
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JMSF024M03+           TCGGACCGCTTTAAACTCGACAATCGGCGATCAGAGAATCCTCGGTCCAAGCGCTTCAAG
JMSF046J05+           TCGGACCGCTTTAAACTCGACAATCGGCGATCAGAGAATCCTCGGTCCAAGCGCTTCAAG
                      ____________________________________________________________
consensus             TCGGACCGCTTTAAACTCGACAATCGGCGATCAGAGAATCCTCGGTCCAAGCGCTTCAAG
 
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JMSF024M03+           AGATCTGAAATAGTCCTGTTCGGAGTCCTTGGCGACGACTGCGCCTCCAAATCTCCCCCT
JMSF046J05+           AGATCTGAAATAGTCCTGTTCGGAGTCCTTGGCGACGACTGCGCCTCCAAATCTCCCCCT
                      ____________________________________________________________
consensus             AGATCTGAAATAGTCCTGTTCGGAGTCCTTGGCGACGACTGCGCCTCCAAATCTCCCCCT
 
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JMSF024M03+           CCTTCAGACACCGACGAATTCGAACACTGCAAATGCAGCTTGTGATCGCTGTAATCGCCT
JMSF013A23+                          GAATTCGAACACTGCAAATGCAGCTTGTGATCGCNGTAATCGCCT
JMSF046J05+           CCTTCAGACACCGACGAATTCGAACACTGCAAATGCAGCTTGTGATCGCTGTAATCGCCT
                      ____________________________________________________________
consensus             CCTTCAGACACCGACGAATTCGAACACTGCAAATGCAGCTTGTGATCGCTGTAATCGCCT
 
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JMSF024M03+           CCTGACATGTCCTCTGGTTCTCACATCACCATTCCAAACATAAACCAATGATAGACGATA
JMSF013A23+           CCTGACATGTCCTCTGGTTCTCACATCACCATTCCAAACATAAACCAATGATAGACGATA
JMSF046J05+           CCTGACATGTCCTCTGGTTCTCACATCACCATTCCAAACATAAACCAATGATAGACGATA
                      ____________________________________________________________
consensus             CCTGACATGTCCTCTGGTTCTCACATCACCATTCCAAACATAAACCAATGATAGACGATA
 
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JMSF024M03+           GATTCATAGATCCCCCGATTGAAGTTGAAGTCAATACTGAAAAAAACAAAAGGAGGACGG
JMSF013A23+           GATTCATAGATCCCCCGATTGAAGTTGAAGTCAATANTGAAAAAAACAAAAGGAGGACGG
JMSF046J05+           GATTCATAGATCCCCCGATTGAAGTTGAAGTCAATACTGAAAAAAACAAAAGGAGGACGG
                      ____________________________________________________________
consensus             GATTCATAGATCCCCCGATTGAAGTTGAAGTCAATACTGAAAAAAACAAAAGGAGGACGG
 
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JMSF024M03+           AGGAGGTTTTGGGAATATTTTC                                      
JMSF013A23+           AGGAGGTTTTGGGAATATTTTCAGGCTATTTTCTTCATTTTTACAAGGTTTTTCTCTG  
JMSF046J05+           AGGAGGTTTTGGGAATATTTTCAGGCTATTTTCTTCATTTTTACAAGGTTTTTCTCTGTC
                      ____________________________________________________________
consensus             AGGAGGTTTTGGGAATATTTTCAGGCTATTTTCTTCATTTTTACAAGGTTTTTCTCTGTC