Contig 002400:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004M18Sequence592002400 (9)ref|XP_009773747.1|1e-15PREDICTED: homeobox-leucine zipper protein HAT5-like [Nicotiana sylvestris]674001030 (6)ref|XP_006367068.1|2e-25PREDICTED: homeobox-leucine zipper protein HOX16-like [Solanum tuberosum]
JMFF026L18Sequence464002400 (9)ref|XP_006344890.1|175PREDICTED: protein TIC 20-v, chloroplastic-like [Solanum tuberosum]695012700 (4)ref|XP_006344890.1|308PREDICTED: protein TIC 20-v, chloroplastic-like [Solanum tuberosum]
JMFF037B11Sequence587002400 (9)ref|XP_009773747.1|7e-16PREDICTED: homeobox-leucine zipper protein HAT5-like [Nicotiana sylvestris]720001030 (6)ref|XP_009773747.1|4e-25PREDICTED: homeobox-leucine zipper protein HAT5-like [Nicotiana sylvestris]
JMFS030C05Sequence618002400 (9)
JMFS155B02Sequence607002400 (9)
JMSF008G14Sequence451002400 (9)ref|XP_006344890.1|155PREDICTED: protein TIC 20-v, chloroplastic-like [Solanum tuberosum]743001030 (6)ref|XP_006367068.1|3e-26PREDICTED: homeobox-leucine zipper protein HOX16-like [Solanum tuberosum]
JMSF041L17Sequence726002400 (9)ref|XP_006344890.1|205PREDICTED: protein TIC 20-v, chloroplastic-like [Solanum tuberosum]732001030 (6)ref|XP_009773747.1|3e-26PREDICTED: homeobox-leucine zipper protein HAT5-like [Nicotiana sylvestris]
JMSF047I09Sequence400002400 (9)759001030 (6)ref|XP_006367068.1|1e-36PREDICTED: homeobox-leucine zipper protein HOX16-like [Solanum tuberosum]
JMSF048D22Sequence611002400 (9)758001030 (6)ref|XP_006367068.1|7e-42PREDICTED: homeobox-leucine zipper protein HOX16-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF004M18+ ACCTTTGGGAACACAGACAACGACTCC-GAAGCAGCCATGAAATTCTTGCTG
JMFF037B11+ GGGAACACAGACAACGACTCCGGAAGCAGCCATGAAATTCTTGCTG
                      ____________________________________________________________
consensus ACCTTTGGGAACACAGACAACGACTCCGGAAGCAGCCATGAAATTCTTGCTG
 
. : . : . : . : . : . :
JMFF004M18+ AACCTATCGTCTTCGTCTTGTGATAAATCTGAGTCTGACCGCTCTGGCTCGAAGACATAG
JMFF037B11+ AACCTATCGTCTTCGTCTTGTGATAAATCTGAGTCTGACCGCTCTGGCTCGAAGACATAG
                      ____________________________________________________________
consensus AACCTATCGTCTTCGTCTTGTGATAAATCTGAGTCTGACCGCTCTGGCTCGAAGACATAG
 
. : . : . : . : . : . :
JMFF004M18+ GAAGAGTCCCCCCCGATGTCGGGAAAAGACGAGTGAACCCCATCGGTGTAGCGAGGGCTG
JMFF037B11+ GAAGAGTCCCCCCCGATGTCGGGAAAAGACGAGTGAACCCCATCGGTGTAGCGAGGGCTG
                      ____________________________________________________________
consensus GAAGAGTCCCCCCCGATGTCGGGAAAAGACGAGTGAACCCCATCGGTGTAGCGAGGGCTG
 
. : . : . : . : . : . :
JMFF004M18+ TCTGAATCCAACACGTCGCTCTTACTCGGGCTTGTACCTTCCAGCTTAACAGGCAGGGCT
JMFF037B11+ TCTGAATCCAACACGTCGCTCTTACTCGGGCTTGTACCTTCCAGCTTAACAGGCAGGGCT
                      ____________________________________________________________
consensus TCTGAATCCAACACGTCGCTCTTACTCGGGCTTGTACCTTCCAGCTTAACAGGCAGGGCT
 
. : . : . : . : . : . :
JMFF004M18+ GGGGATGATGCTGCAACTGAATCAGCCATATGGTCTTTCGACAGTGCTTCCAAAGGGTGT
JMFF037B11+ GGGGATGATGCTGCAACTGAATCAGCCATATGGTCTTTCGACAGTGCTTCCAAAGGGTGT
                      ____________________________________________________________
consensus GGGGATGATGCTGCAACTGAATCAGCCATATGGTCTTTCGACAGTGCTTCCAAAGGGTGT
 
. : . : . : . : . : . :
JMFF004M18+ TGGATATCATCTCGAAACTTTAACGTTTCCTTTTCTTTACCCTTCACAACTAGCTTGTCC
JMFF037B11+ TGGATATCATCTCGAAACTTTAACGTTTCCTTTTCTTTACCCTTCACAACTAGCTTGTCC
                      ____________________________________________________________
consensus TGGATATCATCTCGAAACTTTAACGTTTCCTTTTCTTTACCCTTCACAACTAGCTTGTCC
 
. : . : . : . : . : . :
JMFF004M18+ GTGACGCGAAGAAAGTATTCGTCGGAGTTCTCACATTCATTCTCATCTTGATCATATTTT
JMFF037B11+ GTGACGCGAAGAAAGTATTCGTCGGAGTTCTCACATTCATTCTCATCTTGATCATATTTT
                      ____________________________________________________________
consensus GTGACGCGAAGAAAGTATTCGTCGGAGTTCTCACATTCATTCTCATCTTGATCATATTTT
 
. : . : . : . : . : . :
JMFF004M18+ CGAAAGAATCCCCCTTTGCCATCACAGAAGCTAACCATGGAACTTGACCCTGAGCCATGA
JMFF037B11+ CGAAAGAATCCCCCTTTGCCATCACAGAAGCTAACCATGGAACTTGACCCTGAGCCATGA
JMFS155B02+ CCATGA
JMFS030C05+ AGAAGCTAACCATGGAACTTGACCCTGAGCCATGA
JMSF048D22+ GA
                      ____________________________________________________________
consensus CGAAAGAATCCCCCTTTGCCATCACAGAAGCTAACCATGGAACTTGACCCTGAGCCATGA
 
. : . : . : . : . : . :
JMFF004M18+ AAAGAAGGTGAAAAGCCAGGTGTGAGGAGAGGCTCTTTGGAGGACTGGAACGGAAGCCTC
JMFF037B11+ AAAGAAGGTGAAAAGCCAGGTGTGAGGAGAGGCTCTTTGGAGGACTGGAACGGAAGCCTC
JMFS155B02+ AAAGAAGGTGAAAAGCCAGGTGTGAGGAGAGGCTCTTTGGAGGACTGGAACGGAAGCCTC
JMFS030C05+ AAAGAAGGTGAAAAGCCAGGTGTGAGGAGAGGCTCTTTGGAGGACTGGAACGGAAGCCTC
JMSF048D22+ AAAGAAGGTGAAAAGCCANGTGTGAGGAGAGGCTCTTTGGAGGACTGGAACGGAAGCCTC
                      ____________________________________________________________
consensus AAAGAAGGTGAAAAGCCAGGTGTGAGGAGAGGCTCTTTGGAGGACTGGAACGGAAGCCTC
 
. : . : . : . : . : . :
JMFF004M18+ TGGTTCTGAAGAAAAAGAGTGTTGAAACTAGAATCCCCGGCGCCGGCGCCGGCGCCGTAG
JMFF037B11+ TGGTTCTGAAGAAAAAGAGTGTTGAAACTAGAATCCCCGGCGCCGGCGCCGGCGCCGTAG
JMFS155B02+ TGGTTCTGAAGAAAAAGAGTGTTGAAACTAGAATCCCCGGCGCCGGCGCCGGCGCCGTAG
JMFS030C05+ TGGTTCTGAAGAAAAAGAGTGTTGAAACTAGAATCCCCGGCGCCGGCGCCGGCGCCGTAG
JMSF048D22+ TGGTTCTGAAGAAAAAGAGTGTTGAAACTAGAATCCCCGGCGCCGGCGCCGGCGCCGTAG
                      ____________________________________________________________
consensus TGGTTCTGAAGAAAAAGAGTGTTGAAACTAGAATCCCCGGCGCCGGCGCCGGCGCCGTAG
 
. : . : . : . : . : . :
JMFF004M18+ A
JMFF037B11+ A
JMFS155B02+ AACAAACCGCGACCCGCTTCCATAGCTGTGAAGACAAGATCACGAAGGGTAATTACAAAA
JMFS030C05+ AACAAACCGCGACCCGCTTCCATAGCTGTGAAGACAAGATCACGAAGGGTAATTACAAAA
JMSF048D22+ AACAAACCGCGACCCGCTTCCATAGCTGTGAAGACANGATCNCGAAGGGTAATTACAAAA
                      ____________________________________________________________
consensus AACAAACCGCGACCCGCTTCCATAGCTGTGAAGACAAGATCACGAAGGGTAATTACAAAA
 
. : . : . : . : . : . :
JMFS155B02+ GAAGGGTTATCAGGCAGCCGCCGTAGCTAGACTTTTTACGGTAATCTTGATCCCAACCCG
JMFS030C05+ GAAGGGTTATCAGGCAGCCGCCGTAGCTAGACTTTTTACGGTAATCTTGATCCCAACCCG
JMSF047I09+ CCGTAGCTAGACTTTTTACGGTAATCTTGATCCCANCCCG
JMSF048D22+ GAAGGGTTATCNNGCANCCNCCGTAGCTAGACTTTTTACGGTAATCTTGATCCCANCCCG
                      ____________________________________________________________
consensus GAAGGGTTATCAGGCAGCCGCCGTAGCTAGACTTTTTACGGTAATCTTGATCCCAACCCG
 
. : . : . : . : . : . :
JMFS155B02+ GAGCGCCTCTCCTTCCCTTACCCCTTAACCCGGTTTGCATACACAAATAAACGGAAAAAT
JMFS030C05+ GAGCGCCTCTCCTTCCCTTACCCCTTAACCCGGTTTGCATACACAAATAAACGGAAAAAT
JMSF047I09+ GAGCGCCTCTCNTTCCCTTACCCCTTAACCCGGTTTGCATACACANATAAACGGAAAAAT
JMSF048D22+ GAGCGCCTCTCNTTCCCTTACCCCTTAACCCGGTTTGCATACACANATAAACGGAAAAAT
                      ____________________________________________________________
consensus GAGCGCCTCTCCTTCCCTTACCCCTTAACCCGGTTTGCATACACAAATAAACGGAAAAAT
 
. : . : . : . : . : . :
JMFS155B02+ AAAATCTGGGTTTTAGATCTTATGGCGGAAAAAGCTGGTGATGATGATTTCAGTGATGTG
JMFS030C05+ AAAATCTGGGTTTTAGATCTTATGGCGGAAAAAGCTGGTGATGATGATTTCAGTGATGTG
JMSF047I09+ AAAATCTGGGTTTTAGATCTTATGGCGGAAAAAGCTGGTGATGATGATTTCANTGATGTG
JMSF048D22+ AAAATCTGGGTTTTAGATCTTATGGCGGAAAAAGCTGGTGATGATGATTTCANTGATGTG
                      ____________________________________________________________
consensus AAAATCTGGGTTTTAGATCTTATGGCGGAAAAAGCTGGTGATGATGATTTCAGTGATGTG
 
. : . : . : . : . : . :
JMFS155B02+ GGAAGTGTGAGAACACCTGCTGATCACCACCGCCATCATAACCCCAATCTCTTCTTTCAC
JMFS030C05+ GGAAGTGTGAGAACACCTGCTGATCACCACCGCCATCATAACCCCAATCTCTTCTTTCAC
JMSF047I09+ GGAAGTGTGAGAACACCNGCTGATCACCNCCNCCATCATAACCCCANTCTCTTNTTTCAC
JMSF048D22+ GGAAGTGTGAGAACACCNGCTGATCNCCNCCNCCATCATAACCCCANTCTCTTNTTTCAC
JMSF041L17+ TTTCAC
                      ____________________________________________________________
consensus GGAAGTGTGAGAACACCTGCTGATCACCACCGCCATCATAACCCCAATCTCTTCTTTCAC
 
. : . : . : . : . : . :
JMFS155B02+ AATTCTATGTATGTATGATTGTGTATATACACAGAGAAGTAGAGAGGGAATCTCTGGTAA
JMFS030C05+ AATTCTATGTATGTATGATTGTGTATATACACAGAGAAGTAGAGAGGGAATCTCTGGTAA
JMSF047I09+ ANTTCTATGTATGTATGATTGTGTATATACACANAGAAGTAGAGAGGGAATCTCTGGTAA
JMSF048D22+ ANTTCTATGTATGTATGATTGTGTATATACACANAGAAGTAGAGAGGGAATCTCTGGTAA
JMSF041L17+ ANTTCTATGTATGTATGATTGTGTATATACACANAGAAGTAGAGAGGGAATCTCTGGTAA
                      ____________________________________________________________
consensus AATTCTATGTATGTATGATTGTGTATATACACAGAGAAGTAGAGAGGGAATCTCTGGTAA
 
. : . : . : . : . : . :
JMFS155B02+ TAAGGATATGGGTATTTGGAAGAGAAGACGACAATGGAGAGACAGAAATGTGAAATGAGA
JMFS030C05+ TAAGGATATGGGTATTTGGAAGAGAAGACGACAATGGAGAGACAGAAATGTGAAATGAGA
JMSF047I09+ TAAGGATATGGGTATTTGGAAGAGAAGACGACANTGGAGAGACAGAAATGTGAAATGAGA
JMSF048D22+ TAAGGATATGGGTATTTGGAAGAGAAGACGACANTGGAGAGACAGAAATGTGAAATGAGA
JMSF041L17+ TAAGGATATGGGTATTTGGAAGAGAAGACGACANTGGAGAGACANAAATGTGAAATGAGA
                      ____________________________________________________________
consensus TAAGGATATGGGTATTTGGAAGAGAAGACGACAATGGAGAGACAGAAATGTGAAATGAGA
 
. : . : . : . : . : . :
JMFS155B02+ TTCTGCCTTTGAAAGCAGAGAGAGAGAGAGAGAGAGAGAGA
JMFS030C05+ TTCTGCCTTTGAAAGCAGAGAGAGAGAGAGAGAGAGAGAGAGA
JMSF047I09+ TTCTGCCTTTGAAAGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGTTGGCGAAG
JMSF048D22+ TTCTNCCTTTGAAAGCANAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGTTGGCGAAG
JMSF041L17+ TTCTGCCTNTGAAAGCANAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGTTGGCGAAGTG
                      ____________________________________________________________
consensus TTCTGCCTTTGAAAGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGTTGGCGAAGTG
 
. : . : . : . : . : . :
JMSF041L17+ GAGAGGAGACTTTGAAATCGAAGATCAAGAGCACATCAAGCACAATCGCCTGCATGGTGT
                      ____________________________________________________________
consensus GAGAGGAGACTTTGAAATCGAAGATCAAGAGCACATCAAGCACAATCGCCTGCATGGTGT
 
. : . : . : . : . : . :
JMFF026L18+ CTCACGTACCTACTGAAATTGGGGTTTCTGACAACGACGAAGTAGAGCGTGAAGA
JMSF008G14+ TTTCTGACAACGACGAAGTAGAGCGTGAAGA
JMSF041L17+ TGAACCTCACGTACCTACTGAAATTGGGGTTTCTGACAACGACGAAGTAGAGCGTGAAGA
                      ____________________________________________________________
consensus TGAACCTCACGTACCTACTGAAATTGGGGTTTCTGACAACGACGAAGTAGAGCGTGAAGA
 
. : . : . : . : . : . :
JMFF026L18+ ACACCAGAATCCCATTGAGCGGGAAGCTCTTGAAGACCCGTATAGCCGGAACTAAGGGCT
JMSF008G14+ NCACCAGAATCCCATTGAGCGGGAAGCTCTTGAAGACCCGTATAGCCGGAACTAAGGGCT
JMSF041L17+ ACACCAGAATCCCATTGAGCGGGAAGCTCTTGAAGACCCGTATAGCCGGAACTAAGGGCT
                      ____________________________________________________________
consensus ACACCAGAATCCCATTGAGCGGGAAGCTCTTGAAGACCCGTATAGCCGGAACTAAGGGCT
 
. : . : . : . : . : . :
JMFF026L18+ GAATCAGAGCTTGGACCGGAGTGAACTGCGTGATGACGTATTTGCCGTACTGAACGCCGT
JMSF008G14+ GAATCAGAGCTTGGACCGGAGTGAACTGCGTGATGACGTATTTGCCGTACTGAACGCCGT
JMSF041L17+ GAATCAGAGCTTGGACCGGAGTGAACTGCGTGATGACGTATTTGCCGTACTGAACGCCGT
                      ____________________________________________________________
consensus GAATCAGAGCTTGGACCGGAGTGAACTGCGTGATGACGTATTTGCCGTACTGAACGCCGT
 
. : . : . : . : . : . :
JMFF026L18+ CGAAGAAAGGGTAGAAGTAAGCAATGGCAGAGATTAAACGGTCAGGGCCATCCGCTGTGC
JMSF008G14+ CGAAGAAAGGGTAGAAGTAAGCAATGGCAGAGATTAAACGGTCAGGGCCATCCGCTGTGC
JMSF041L17+ CGAAGAAAGGGTAGAAGTAAGCAATGGCAGAGATTAAACGGTCAGGGCCATCCGCTGTGC
                      ____________________________________________________________
consensus CGAAGAAAGGGTAGAAGTAAGCAATGGCAGAGATTAAACGGTCAGGGCCATCCGCTGTGC
 
. : . : . : . : . : . :
JMFF026L18+ TGCTGCCCTTTGATTGAACGGTGACTAGGAGGCGTCTGGGAGCTCCGGCGGGTTTTCTTA
JMSF008G14+ TGCTGCCCTTTGATTGAACGGTGACTAGGAGGCGTCTGGGAGCTCCGGCGGGTTTTCTTA
JMSF041L17+ TGCTGCCCTTTGATTGAACGGTGACTAGGAGGCGTCTGGGAGCTCCGGCGGGTTTTCTTA
                      ____________________________________________________________
consensus TGCTGCCCTTTGATTGAACGGTGACTAGGAGGCGTCTGGGAGCTCCGGCGGGTTTTCTTA
 
. : . : . : . : . : . :
JMFF026L18+ GCAGAGACGGTGAGTGTTGCAGGTGGAGGGGAGTTATGCTGGGTCTGTGAGAGAAGAGTT
JMSF008G14+ GCAGAGACGGTGAGTGTTGCAGGTGGAGGGGAGTTATGCTGGGTCTGTGAGAGAAGAGTT
JMSF041L17+ GCAGAGACGGTGAGTGTTGCAGGTGGAGGGGAGTTATGCTGGGTCTGTGAGAGAAGAGTT
                      ____________________________________________________________
consensus GCAGAGACGGTGAGTGTTGCAGGTGGAGGGGAGTTATGCTGGGTCTGTGAGAGAAGAGTT
 
. : . : . : . : . : . :
JMFF026L18+ GGGGTGTAGATAAAAGATTGGATATGGCCATCCCGTGAATCGATTCCAGAAGGATGACCA
JMSF008G14+ GGGGTGTAGATAAAAGATTGGATATGGCCATCCCGTGAATCGATTCCAGAAGGATGACCA
JMSF041L17+ GGGGTGTAGATAAAAGATTGGATATGGCCATCCCGTGAATCGATTCCAGAAGGATGACCA
                      ____________________________________________________________
consensus GGGGTGTAGATAAAAGATTGGATATGGCCATCCCGTGAATCGATTCCAGAAGGATGACCA
 
. : . : . : . : . : . :
JMFF026L18+ AGAAAATCTTGAGAGAGAAGAGAAAAAGATGCGATCTTTGGGGGCTTCC
JMSF008G14+ AGAAAATCTTGAGAGAGAAGAGAAAAAGATGCGATCTTTGGGGGCTTCCACTTGTTGAT
JMSF041L17+ AGAAAATCTTGAGAGAGAAGAGAAAAAGATGCGATCTTTGGGGGCTTCCACTTGTTGATC
                      ____________________________________________________________
consensus AGAAAATCTTGAGAGAGAAGAGAAAAAGATGCGATCTTTGGGGGCTTCCACTTGTTGATC