Contig 002388:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005O11Sequence243002388 (6)
JMSF007P07Sequence237002388 (6)emb|CDP15520.1|3e-06unnamed protein product [Coffea canephora]810009903 (5)ref|XP_009760211.1|1e-89PREDICTED: mitochondrial Rho GTPase 1-like [Nicotiana sylvestris]
JMSF011D08Sequence237002388 (6)779009903 (5)ref|XP_009760211.1|1e-88PREDICTED: mitochondrial Rho GTPase 1-like [Nicotiana sylvestris]
JMSF031H22Sequence601002388 (6)ref|XP_009625701.1|5e-81PREDICTED: mitochondrial Rho GTPase 1 [Nicotiana tomentosiformis] ref|XP_0096257730009903 (5)ref|XP_009760211.1|9e-80PREDICTED: mitochondrial Rho GTPase 1-like [Nicotiana sylvestris]
JMSF040E24Sequence508002388 (6)ref|XP_009625701.1|6e-44PREDICTED: mitochondrial Rho GTPase 1 [Nicotiana tomentosiformis] ref|XP_0096257
JMSF047E09Sequence700002388 (6)ref|XP_009625701.1|4e-121PREDICTED: mitochondrial Rho GTPase 1 [Nicotiana tomentosiformis] ref|XP_0096257791009903 (5)ref|XP_009760211.1|7e-89PREDICTED: mitochondrial Rho GTPase 1-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF047E09+                    TTCGGCATCACTAAGGGCACCATCCCTATCATGGTCACACAGAATGAAAAT
                      ____________________________________________________________
consensus                      TTCGGCATCACTAAGGGCACCATCCCTATCATGGTCACACAGAATGAAAAT
 
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JMSF047E09+           CCGTTTTAAAGCTCTAATACATCTTGGTTTTAAAGTCTGAGCTTCCTGATCAAATAATGG
                      ____________________________________________________________
consensus             CCGTTTTAAAGCTCTAATACATCTTGGTTTTAAAGTCTGAGCTTCCTGATCAAATAATGG
 
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JMSF047E09+           AGCTGTTGGGTGCAGAACTGTCTTTTGTCCATAGTAGAAAACCTCAGCAACCTGAATTAG
                      ____________________________________________________________
consensus             AGCTGTTGGGTGCAGAACTGTCTTTTGTCCATAGTAGAAAACCTCAGCAACCTGAATTAG
 
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JMSF047E09+           TTTGTATGCTGAGCACTCAATACATGTTTCAATCTCTCGGAATTGTTGCATTATTGGTAA
JMSF031H22+            TTGTATGCTGAGCACTCAATACATGTTTCAATCTCTCGGAATTGTTGCATTATTGGTAA
                      ____________________________________________________________
consensus             TTTGTATGCTGAGCACTCAATACATGTTTCAATCTCTCGGAATTGTTGCATTATTGGTAA
 
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JMSF047E09+           CATAACCTGCTCCAAATTTATAGCTTGCTGGTCATCCCTCTTGTCAAGCATGCAACCCAC
JMSF031H22+           CATAACCTGCTCCAAATTTATAGCTTGCTGGTCATCCCTCTTGTCAAGCATGCAACCCAC
                      ____________________________________________________________
consensus             CATAACCTGCTCCAAATTTATAGCTTGCTGGTCATCCCTCTTGTCAAGCATGCAACCCAC
 
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JMSF047E09+           AACAATAACAGGAGCCTTGACCTCTAGTCTACGAAGTTCAGGTAGCCAATATGTGCTCAA
JMSF031H22+           AACAATAACAGGAGCCTTGACCTCTAGTCTACGAAGTTCAGGTAGCCAATATGTGCTCAA
JMSF040E24+                                           GAAGTTCAGGTAGCCAATATGTGCTCAA
                      ____________________________________________________________
consensus             AACAATAACAGGAGCCTTGACCTCTAGTCTACGAAGTTCAGGTAGCCAATATGTGCTCAA
 
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JMSF047E09+           CCGATCAAGAGTAGCAGGTTTGTCACATGCATATGTTAGTACAACTGCATCAGCTCTCAT
JMSF031H22+           CCGATCAAGAGTAGCAGGTTTGTCACATGCATATGTTAGTACAACTGCATCAGCTCTCAT
JMSF040E24+           CCGATCAAGAGTAGCAGGTTTGTCACATGCATATGNTAGTACAANTGCATCAGCTNTCAT
                      ____________________________________________________________
consensus             CCGATCAAGAGTAGCAGGTTTGTCACATGCATATGTTAGTACAACTGCATCAGCTCTCAT
 
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JMSF047E09+           CATTTCCTCAAAAAGTGTACCCCTGTTTTCTGGACTGGACGATGTATCGATGATGGTAAG
JMSF031H22+           CATTTCCTCAAAAAGTGTACCCCTGTTTTCTGGACTGGACGATGTATCGATGATGGTAAG
JMSF040E24+           CATTTCCTCAAAAAGTGNACCCCTGTTTTCTGGACTGGACGATGTATCGATGATGGTAAG
                      ____________________________________________________________
consensus             CATTTCCTCAAAAAGTGTACCCCTGTTTTCTGGACTGGACGATGTATCGATGATGGTAAG
 
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JMSF047E09+           GGGAACTCGATCCGGGAAGATGTCATCGGGAAGCCTCGTCGGGGGCAATACAGGGGGGAC
JMSF031H22+           GGGAACTCGATCCGGGAAGATGTCATCGGGAAGCCTCGTCGGGGGCAATACAGGGGGGAC
JMSF040E24+           GGGAACTCGATCCGGGAAGATGTCATCGGGAAGCCTCGTCGGGGGCAATACAGGGGGGAC
                      ____________________________________________________________
consensus             GGGAACTCGATCCGGGAAGATGTCATCGGGAAGCCTCGTCGGGGGCAATACAGGGGGGAC
 
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JMSF047E09+           ACTGGCCGGAAACGATTCAGTGGCGGCTGCCAAGATTAAGCTGGATTTTCCGGTCTTAGG
JMSF031H22+           ACTGGCCGGAAACGATTCAGTGGCGGCTGCCAAGATTAAGCTGGATTTTCCGGTCTTAGG
JMSF005O11+                                                                    AGG
JMSF007P07+                CCGGAAACGATTCAGTGGCGGCTGCCAAGATTAAGCTGGATTTTCCGGTCTTAGG
JMSF040E24+           ACTGGCCGGAAACGATTCAGTGGCGGCTGCCAAGATTAAGCTGGATTTTCCGGTNTTAGG
                      ____________________________________________________________
consensus             ACTGGCCGGAAACGATTCAGTGGCGGCTGCCAAGATTAAGCTGGATTTTCCGGTCTTAGG
 
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JMSF047E09+           GTCACCGGCGACGATGACGCGAACACCGGAGATGTTCCCCTTCGCATTAGATGAACCACC
JMSF031H22+           GTCACCGGCGACGATGACGCGAACACCGGAGATGTTCCCCTTCGCATTAGATGAACCACC
JMSF005O11+           GTCACCGGCGACGATGACGCGAACACCGGAGATGTTCCCCTTCGCATTAGATGAACCACC
JMSF007P07+           GTCACCGGCGACGATGACGCGAACACCGGAGATGTTCCCCTTCGCATTAGATGAACCACC
JMSF011D08+              ACCGGCGACGATGACGCGAACACCGGAGATGTTCCCCTTCGCATTAGATGAACCACC
JMSF040E24+           GTCACCGGCGACGATGACGCGAACACCGGAGATGTTCCCCTTCGCATTAGATGAACCACC
                      ____________________________________________________________
consensus             GTCACCGGCGACGATGACGCGAACACCGGAGATGTTCCCCTTCGCATTAGATGAACCACC
 
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JMSF047E09+           TCCTGCCATTAACTCTACGCGCGAACGAATAAACTTGTATGTAAACCC            
JMSF031H22+           TCCTGCCATTAACTCTCCGCGCGAACGAATAAACTTGTATGTAAACCCTAAACCCTAATA
JMSF005O11+           TCCTGCCATTAACTCTCCGCGCGAACGAATAAACTTGTATGTAAACCCTAAACCCTAATA
JMSF007P07+           TCCTGCCATTAACTCTCCGCGCGAACGAATAAACTTGTATGTAAACCCTAAACCCTAATA
JMSF011D08+           TCCTGCCATTAACTCTCCGCGCGAACGAATAAACTTGTATGTAAACCCTAAACCCTAATA
JMSF040E24+           TCCTGCCNTTAACTCTCCGCGCGAACGAATAAACTTGTATGTAAACCCTAAACCCTAATA
                      ____________________________________________________________
consensus             TCCTGCCATTAACTCTCCGCGCGAACGAATAAACTTGTATGTAAACCCTAAACCCTAATA
 
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JMSF031H22+           CCAAAATAGATAGATAATATTAATGGAAAGATAGTTATGAAGATTAGGAGCTTTCGCGGG
JMSF005O11+           CCAAAATAGATAGATAATATTAATGGAAAGATAGTTATGAAGATTAGGAGCTTTCGCGGG
JMSF007P07+           CCAAAATAGATAGATAATATTAATGGAAAGATAGTTATGAAGATTAGGAGCTTTCGCGGG
JMSF011D08+           CCAAAATAGATAGATAATATTAATGGAAAGATAGTTATGAAGATTAGGAGCTTTCGCGGG
JMSF040E24+           CCAAAATAGATAGATAATATTAATGGAAAGATAGTTATGAAGATTAGGAGCTTTCGCGGG
                      ____________________________________________________________
consensus             CCAAAATAGATAGATAATATTAATGGAAAGATAGTTATGAAGATTAGGAGCTTTCGCGGG
 
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JMSF031H22+           T                                                           
JMSF005O11+           TAGAGAAAGACGGGAGAGAATGAATATAAAAATAGCTGCTGAAGAAGCGGTGAAAGCT  
JMSF007P07+           T                                                           
JMSF011D08+           TAGAGAAAGACGGGAGAGAATGAATATAAAAATAGCTGCTGAAGAAGCGGTGAAAGCT  
JMSF040E24+           TAGAGAAAGACGGGAGAGAATGAATATAAAAATAGCTGCTGAAGAAGCGGTGAAAGCTCC
                      ____________________________________________________________
consensus             TAGAGAAAGACGGGAGAGAATGAATATAAAAATAGCTGCTGAAGAAGCGGTGAAAGCTCC