Contig 002354:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015M19Sequence463002354 (4)712013929 (4)ref|XP_008245060.1|3e-49PREDICTED: enhancer of polycomb homolog 2 [Prunus mume]
JMSF031G21Sequence648002354 (4)724013929 (4)ref|XP_008372925.1|8e-23PREDICTED: enhancer of polycomb homolog 2-like isoform X2 [Malus domestica]
JMSF033C13Sequence671002354 (4)772013929 (4)ref|XP_008372925.1|1e-22PREDICTED: enhancer of polycomb homolog 2-like isoform X2 [Malus domestica]
JMSF035O23Sequence671002354 (4)612013929 (4)ref|XP_008372925.1|3e-23PREDICTED: enhancer of polycomb homolog 2-like isoform X2 [Malus domestica]

Alignment

This contig is upended


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JMSF033C13+                          TATGGTATGTCCATAAAACAATGGATTGTAGGTTGCATCTGTCAA
JMSF031G21+                                                               TCTGTCAA
JMSF035O23+                                                               TCTGTCAA
                      ____________________________________________________________
consensus                            TATGGTATGTCCATAAAACAATGGATTGTAGGTTGCATCTGTCAA
 
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JMSF033C13+           AATGTTTCTCAATTGACTCAGACTAGACAGACTGCTAATGACAGCAAATCTATGAGTGAC
JMSF031G21+           AATGTTTCTCAATTGACTCAGACTAGACAGACTGCTAATGACAGCAAATCTATGAGTGAC
JMSF035O23+           AATGTTTCTCAATTGACTCAGACTAGACAGACTGCTAATGACAGCAAATCTATGAGTGAC
                      ____________________________________________________________
consensus             AATGTTTCTCAATTGACTCAGACTAGACAGACTGCTAATGACAGCAAATCTATGAGTGAC
 
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JMSF033C13+           CTCACTGTTTACATCAGGTCTAATTTGATAATATGGGTTTGCCAAAAAACAACATATAGT
JMSF031G21+           CTCACTGTTTACATCAGGTCTAATTTGATAATATGGGTTTGCCAAAAAACAACATATAGT
JMSF035O23+           CTCACTGTTTACATCAGGTCTAATTTGATAATATGGGTTTGCCAAAAAACAACATATAGT
                      ____________________________________________________________
consensus             CTCACTGTTTACATCAGGTCTAATTTGATAATATGGGTTTGCCAAAAAACAACATATAGT
 
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JMSF033C13+           ATCTTGTGCCTCAACTGTACGAGTACAAGACTAGCTTATGTCGCCACTAAAGTATCATGG
JMSF031G21+           ATCTTGTGCCTCAACTGTACGAGTACAAGACTAGCTTATGTCGCCACTAAAGTATCATGG
JMSF035O23+           ATCTTGTGCCTCAACTGTACGAGTACAAGACTAGCTTATGTCGCCACTAAAGTATCATGG
                      ____________________________________________________________
consensus             ATCTTGTGCCTCAACTGTACGAGTACAAGACTAGCTTATGTCGCCACTAAAGTATCATGG
 
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JMSF033C13+           TTGAAATTCCTATTTGGTTAACTTGGTTTTACTAATCTAATGTTGTCTATCCTATGGTGT
JMSF031G21+           TTGAAATTCCTATTTGGTTAACTTGGTTTTACTAATCTAATGTTGTCTATCCTATGGTGT
JMSF015M19+                          GGTTAACTTGGTTTTACTAATCTAATGTNGTCTATCCTATGGTGT
JMSF035O23+           TTGAAATTCCTATTTGGTTAACTTGGTTTTACTAATCTAATGTTGTCTATCCTATGGTGT
                      ____________________________________________________________
consensus             TTGAAATTCCTATTTGGTTAACTTGGTTTTACTAATCTAATGTTGTCTATCCTATGGTGT
 
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JMSF033C13+           GACAGGTTCAGCACAGTGTTGTAAAACTCAGCCAAAGCAGCCTCCTAGGCTCCCCTAGGC
JMSF031G21+           GACAGGTTCAGCACAGTGTTGTAAAACTCAGCCAAAGCAGCCTCCTAGGCTCCCCTAGGC
JMSF015M19+           GACAGGTTCAGCACAGTGTTGTAAAACTCAGCCAAAGCAGCCTCCTAGGCTCCCCTAGGC
JMSF035O23+           GACAGGTTCAGCACAGTGTTGTAAAACTCAGCCAAAGCAGCCTCCTAGGCTCCCCTAGGC
                      ____________________________________________________________
consensus             GACAGGTTCAGCACAGTGTTGTAAAACTCAGCCAAAGCAGCCTCCTAGGCTCCCCTAGGC
 
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JMSF033C13+           CGAGTCAACTTAGGCAGCCATTTACACGCCATTCCCCCTAGTCGGCCGAGTAGGCAGTTA
JMSF031G21+           CGAGTCAACTTAGGCAGCCATTTACACGCCATTCCCCCTAGTCGGCCGAGTAGGCAGTTA
JMSF015M19+           CGAGTCAACTTAGGCAGCCATTT--ACGCCATTCCCCCTAGTCGGCCGAGTAGGCAGTTA
JMSF035O23+           CGAGTCAACTTAGGCAGCCATTTACACGCCATTCCCCCTAGTCGGCCGAGTAGGCAGTTA
                      ____________________________________________________________
consensus             CGAGTCAACTTAGGCAGCCATTTACACGCCATTCCCCCTAGTCGGCCGAGTAGGCAGTTA
 
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JMSF033C13+           AACATCACTGCTCGAAGTCACCTCAGAACAACCTTACGCCTTCGGCCGTCTGCTCGGAGT
JMSF031G21+           AACATCACTGCTCGAAGTCACCTCAGAACAACCTTACGCCTTCGGCCGTCTGCTCGGAGT
JMSF015M19+           AACATCACTGCTCGAAGTCACCTCAGAACAACCTTACGCCTTCGGCCGTCTGCTCGGAGT
JMSF035O23+           AACATCACTGCTCGAAGTCACCTCAGAACAACCTTACGCCTTCGGCCGTCTGCTCGGAGT
                      ____________________________________________________________
consensus             AACATCACTGCTCGAAGTCACCTCAGAACAACCTTACGCCTTCGGCCGTCTGCTCGGAGT
 
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JMSF033C13+           GCTAATCTGTTCGTTGCTCAACCATCACTAACTGCCGATCGACTCAGAACTCACAAGTCA
JMSF031G21+           GCTAATCTGTTCGTTGCTCAACCATCACTAACTGCCGATCGACTCAGAACTCACAAGTCA
JMSF015M19+           GCTAATCTGTTCGTTGCTCAACCATCACTAACTGCCGATCGACTCAGAACTCACAAGTCA
JMSF035O23+           GCTAATCTGTTCGTTGCTCAACCATCACTAACTGCCGATCGACTCAGAACTCACAAGTCA
                      ____________________________________________________________
consensus             GCTAATCTGTTCGTTGCTCAACCATCACTAACTGCCGATCGACTCAGAACTCACAAGTCA
 
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JMSF033C13+           CAAATGCTCGCTGCTCGCCCTTTTGCCCTACTCCTTCGCTGCTCACTGGTCTTCATTGCC
JMSF031G21+           CAAATGCTCGCTGCTCGCCCTTTTGCCCTACTCCTTCGCTGCTCACTGGTCTTCATTGCC
JMSF015M19+           CAAATGCTCGCTGCTCGCCCTTTTGCCCTACTCCTTCGCTGCTCACTGGTCTTCATTGCC
JMSF035O23+           CAAATGCTCGCTGCTCGCCCTTTTGCCCTACTCCTTCGCTGCTCACTGGTCTTCATTGCC
                      ____________________________________________________________
consensus             CAAATGCTCGCTGCTCGCCCTTTTGCCCTACTCCTTCGCTGCTCACTGGTCTTCATTGCC
 
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JMSF033C13+           ATTAGAGGTCACCAGAGTGAGGTCAGCTCTTGGTCGCCGTTGCCTAGATATCTCTTTTTC
JMSF031G21+           ATTAGAGGTCACCAGAGTGAGGTCAGCTCTTGGTCGCCGTTGCCTAGATATCTCTTTTTC
JMSF015M19+           ATTAGAGGTCACCAGAGTGAGGTCAGCTCTTGGTCGCCGTTGCCTAGATATCTCTTTTTC
JMSF035O23+           ATTAGAGGTCACCAGAGTGAGGTCAGCTCTTGGTCGCCGTTGCCTAGATATCTCTTTTTC
                      ____________________________________________________________
consensus             ATTAGAGGTCACCAGAGTGAGGTCAGCTCTTGGTCGCCGTTGCCTAGATATCTCTTTTTC
 
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JMSF033C13+           TCCGTAAGCTGCAGCAAAGAACCAG                                   
JMSF031G21+           TCCGTAAGCTGCAGCAAAGAACCAGAGAATTGAGAGAG                      
JMSF015M19+           TCCGTAAGCTGCAGCAAAGAACCAGAGAATTGAGAGAGTGAGAGACATGGAGGGGATGCC
JMSF035O23+           TCCGTAAGCTGCAGCAAAGAACCAGAGAATTGAGAGAGTGAGAGACATGGAGGGGATGCC
                      ____________________________________________________________
consensus             TCCGTAAGCTGCAGCAAAGAACCAGAGAATTGAGAGAGTGAGAGACATGGAGGGGATGCC