Contig 002342:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018P16Sequence496002342 (2)sp|Q40593.1|VDE_TOBAC3e-04RecName: Full=Violaxanthin de-epoxidase, chloroplastic; Flags: Precursor [Nicot800001343 (5)ref|XP_009607573.1|1e-50PREDICTED: violaxanthin de-epoxidase, chloroplastic [Nicotiana tomentosiformis]
JMSF034F13Sequence662002342 (2)sp|Q40593.1|VDE_TOBAC5e-34RecName: Full=Violaxanthin de-epoxidase, chloroplastic; Flags: Precursor [Nicot790001343 (5)ref|XP_009607573.1|2e-66PREDICTED: violaxanthin de-epoxidase, chloroplastic [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF034F13+                                                                     GA
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consensus                                                                       GA
 
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JMSF034F13+           GACAAGCAACATNGGCTGCACATGAAGGGTTTGCAATACATTTGGCAAGCTCCAACCTGC
                      ____________________________________________________________
consensus             GACAAGCAACATNGGCTGCACATGAAGGGTTTGCAATACATTTGGCAAGCTCCAACCTGC
 
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JMSF034F13+           ATTCTTTGAGTAAGCAAGTACAAGTTTTAAGAGCATCCACTGCATCGGCCTGTGGAATCA
                      ____________________________________________________________
consensus             ATTCTTTGAGTAAGCAAGTACAAGTTTTAAGAGCATCCACTGCATCGGCCTGTGGAATCA
 
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JMSF018P16+                                                       CTCCACTTCCTACCAA
JMSF034F13+           CCATTAAGACAAATGCAGCTACGATAGCAGTTTGGGCAAAGTGGCTCCACTTCCTACCAA
                      ____________________________________________________________
consensus             CCATTAAGACAAATGCAGCTACGATAGCAGTTTGGGCAAAGTGGCTCCACTTCCTACCAA
 
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JMSF018P16+           TGATCAAGGGTAATGCCTTCCAGTATTTGCATATTTCCTTATACATATCCATGTTATTCT
JMSF034F13+           TGATCAAGGGTAATGCCTTCCAGTATTTGCATATTTCCTTATACATATCCATGTTATTCT
                      ____________________________________________________________
consensus             TGATCAAGGGTAATGCCTTCCAGTATTTGCATATTTCCTTATACATATCCATGTTATTCT
 
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JMSF018P16+           TGCTTGTCGAAGAGCTATTCTCTTTTCTAAGTAAAGGTGAGTCTGGGCATTTACGGCATC
JMSF034F13+           TGCTTGTCGAAGAGCTATTCTCTTTTCTAAGTAAAGGTGAGTCTGGGCATTTACGGCATC
                      ____________________________________________________________
consensus             TGCTTGTCGAAGAGCTATTCTCTTTTCTAAGTAAAGGTGAGTCTGGGCATTTACGGCATC
 
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JMSF018P16+           TAGGACCCAATGCACCGCATATCTTAGGAGCTTTAAGAAACTTCAGGTGTCTGGGTCTCC
JMSF034F13+           TAGGACCCAATGCACCGCATATCTTAGGAGCTTTAAGAAACTTCAGGTGTCTGGGTCTCC
                      ____________________________________________________________
consensus             TAGGACCCAATGCACCGCATATCTTAGGAGCTTTAAGAAACTTCAGGTGTCTGGGTCTCC
 
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JMSF018P16+           ATCTATTTGGCAAGAATTTCACTATTACTAGACTCTCACAGAAGTCACCTGTGGTCCAGC
JMSF034F13+           ATCTATTTGGCAAGAATTTCACTATTACTAGACTCTCACAGAAGTCACCTGTGGTCCAGC
                      ____________________________________________________________
consensus             ATCTATTTGGCAAGAATTTCACTATTACTAGACTCTCACAGAAGTCACCTGTGGTCCAGC
 
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JMSF018P16+           TGCACTTATTATCACTCAGAACCTGCGATCCAATACGATAATGGATGGCCTGATTGGCAA
JMSF034F13+           TGCACTTATTATCACTCAGAACCTGCGATCCAATACGATAATGGATGGCCTGATTGGCAA
                      ____________________________________________________________
consensus             TGCACTTATTATCACTCAGAACCTGCGATCCAATACGATAATGGATGGCCTGATTGGCAA
 
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JMSF018P16+           GAAAATGCGATTGTAAAGCAAAGGCCATTCTTCAACCTGGGATTAAAGTGAGCAATGGCG
JMSF034F13+           GAAAATGCGATTGTAAAGCAAAGGCCATTCTTCAACCTGGGATTAAAGTGAGCAATGGCG
                      ____________________________________________________________
consensus             GAAAATGCGATTGTAAAGCAAAGGCCATTCTTCAACCTGGGATTAAAGTGAGCAATGGCG
 
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JMSF018P16+           CAGGGCAATGCGGGTAAAGCATAGAATTCGGGCAGAATGAAGAGCAAAAGGGAGAAAAAT
JMSF034F13+           CAGGGCAATGCGGGTAAAGCATAGAATTCGGGCAGAATGAAGAGCAAAAGGGAGAAAAAT
                      ____________________________________________________________
consensus             CAGGGCAATGCGGGTAAAGCATAGAATTCGGGCAGAATGAAGAGCAAAAGGGAGAAAAAT
 
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JMSF018P16+           GAACGAAGGGCTAAGGAGCTTTCAGCTGGATAACACAATCTTGTGATGGTAAGCCTA   
JMSF034F13+           GAACGAAGGGCTAAGGAGCTTTCAGCTGGATAACACAATCTTGTGATGGTAAGCCTACTC
                      ____________________________________________________________
consensus             GAACGAAGGGCTAAGGAGCTTTCAGCTGGATAACACAATCTTGTGATGGTAAGCCTACTC