clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF031A11 | Sequence | 655 | 002330 (3) | gb|KDO85205.1| | 3e-29 | hypothetical protein CISIN_1g018859mg [Citrus sinensis] gb|KDO85206.1| hypotheti | 758 | 001409 (2) | ref|XP_006355276.1| | 353 | PREDICTED: uncharacterized protein LOC102586731 [Solanum tuberosum] |
JMSF032O07 | Sequence | 695 | 002330 (3) | gb|KDO85205.1| | 5e-37 | hypothetical protein CISIN_1g018859mg [Citrus sinensis] gb|KDO85206.1| hypotheti | 691 | 001409 (2) | ref|XP_006355276.1| | 313 | PREDICTED: uncharacterized protein LOC102586731 [Solanum tuberosum] |
JMSF036A15 | Sequence | 401 | 002330 (3) | ref|XP_009758629.1| | 85.9 | PREDICTED: uncharacterized protein LOC104211285, partial [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMSF032O07+ TCTTCATACTTAAGAGGACTAGAGATGCNTCTTCT
____________________________________________________________
consensus TCTTCATACTTAAGAGGACTAGAGATGCNTCTTCT
. : . : . : . : . : . :
JMSF031A11+ ATCTCAATTGACCACGCCGAACGAGATCAGCCACCGTGCCAGGACTGCTATATCT
JMSF036A15+ TCT
JMSF032O07+ ATCAGATCTCAATTGACCACGCCGAACGAGATCAGCCACCGTGCCAGGACTGCTATATCT
____________________________________________________________
consensus ATCAGATCTCAATTGACCACGCCGAACGAGATCAGCCACCGTGCCAGGACTGCTATATCT
. : . : . : . : . : . :
JMSF031A11+ TGATTTTCTCAACATGTGATTTCTCACAGCAATAATCAGCAAAGTTGCTATCACAAATAT
JMSF036A15+ TGATTTTCTCAACATGTGATTTCTCACAGCAATAATCAGCAAAGTTGCTATCACAAATAT
JMSF032O07+ TGATTTTCTCAACATGTGATTTCTCACAGCAATAATCAGCAAAGTTGCTATCACAAATAT
____________________________________________________________
consensus TGATTTTCTCAACATGTGATTTCTCACAGCAATAATCAGCAAAGTTGCTATCACAAATAT
. : . : . : . : . : . :
JMSF031A11+ ACCAACTGCAAACCCAGCACTCGGATGCTTTTTTGTCAAGAAAACGATGGGAGGGCAAGA
JMSF036A15+ ACCAACTGCAAACCCAGCACTCGGATGCTTTTTTGTCAAGAAANCGATGGGAGGGCAAGA
JMSF032O07+ ACCAACTGCAAACCCAGCACTCGGATGCTTTTTTGTCAAGAAAACGATGGGAGGGCAAGA
____________________________________________________________
consensus ACCAACTGCAAACCCAGCACTCGGATGCTTTTTTGTCAAGAAAACGATGGGAGGGCAAGA
. : . : . : . : . : . :
JMSF031A11+ GCCAACAGTCACTTGCAATTTAGTAATCACATTTTTCGGAATCAGTATAATCTTATTCTT
JMSF036A15+ GCCAACAGTCACTTGCAATTTAGTAATCACATTTTTCGGAATCAGNATAATCCTATTCTT
JMSF032O07+ GCCAACAGTCACTTGCAATTTAGTAATCACATTTTTCGGAATCAGTATAATCTTATTCTT
____________________________________________________________
consensus GCCAACAGTCACTTGCAATTTAGTAATCACATTTTTCGGAATCAGTATAATCTTATTCTT
. : . : . : . : . : . :
JMSF031A11+ AGATTCAACAACGTTGCTTTCCTCCGGAAGTTGCCTGACATCATCACCATTCAATGAATT
JMSF036A15+ AGATTCAACAACGTTGCTTTCCTCCGGAAGTTGCCTGACATCATCACCATTCAATGAATT
JMSF032O07+ AGATTCAACAACGTTGCTTTCCTCCGGAAGTTGCCTGACATCATCACCATTCAATGAATT
____________________________________________________________
consensus AGATTCAACAACGTTGCTTTCCTCCGGAAGTTGCCTGACATCATCACCATTCAATGAATT
. : . : . : . : . : . :
JMSF031A11+ GCGTGCAGCTCTTAATTCAATCCTTTTGAAAATATAGCTTCTATTGAAGCTATTGTAGCC
JMSF036A15+ GCGTGCAGCTCTTAATTCAATCCTTTTGAAAATATAGCTTNTATTGAAGCTATTGTAGCC
JMSF032O07+ GCGTGCAGCTCTTAATTCAATCCTTTTGAAAATATAGCTTCTATTGAAGCTATTGTAGCC
____________________________________________________________
consensus GCGTGCAGCTCTTAATTCAATCCTTTTGAAAATATAGCTTCTATTGAAGCTATTGTAGCC
. : . : . : . : . : . :
JMSF031A11+ GCGGTGGAGCCAAAATCGTGCTCTGAATTCTAGCAGGCTTGGCGAAACTCGATGCTGAAA
JMSF036A15+ GCGGTGGAGCCAAAATCGTGCTCTGAATTCTAGCAGGCTTGGCGAAACTNGATGCTGAAA
JMSF032O07+ GCGGTGGAGCCAAAATCGTGCTCTGAATTCTAGCAGGCTTGGCGAAACTCGATGCTGAAA
____________________________________________________________
consensus GCGGTGGAGCCAAAATCGTGCTCTGAATTCTAGCAGGCTTGGCGAAACTCGATGCTGAAA
. : . : . : . : . : . :
JMSF031A11+ TGAGACCGTATGAAATTGAAGAGTCCAAACTGAAGCCATTTTTTTGTTGTTCTTATTCAA
JMSF036A15+ TGAGACCGTATGAAATTGAAGAGTCCAAACTGAAGCCA
JMSF032O07+ TGAGACCGTATGAAATTGAAGAGTCCAAACTGAAGCCATTTTTTTGTTGTTCTTATTCAA
____________________________________________________________
consensus TGAGACCGTATGAAATTGAAGAGTCCAAACTGAAGCCATTTTTTTGTTGTTCTTATTCAA
. : . : . : . : . : . :
JMSF031A11+ GGAAGAAAAATGCTCATTCTCGCTGCAAATTGTAAAATTAGGGCTAGCGAGAAAGAAGGA
JMSF032O07+ GGAAGAAAAATGCTCATTCTCGCTGCAAATTGTAAAATTAGGGCTAGCGAGAAAGAAGGA
____________________________________________________________
consensus GGAAGAAAAATGCTCATTCTCGCTGCAAATTGTAAAATTAGGGCTAGCGAGAAAGAAGGA
. : . : . : . : . : . :
JMSF031A11+ TAATCTAAAGGAACCGCAAGATTACCGGAAGATGGCCACCGGAAGAGCTCAAAATTGCGC
JMSF032O07+ TAATCTAAAGGAACCGCAAGATTACCGGAAGATGGCCACCGGAAGAGCTCAAAATTGCGC
____________________________________________________________
consensus TAATCTAAAGGAACCGCAAGATTACCGGAAGATGGCCACCGGAAGAGCTCAAAATTGCGC
. : . : . : . : . : . :
JMSF031A11+ CGCCGTTATATCACCGGCCAGAAATCCGGAGATTTTCTGCTAGGCAGTGGCGAGTACACC
JMSF032O07+ CGCCGTTATATCACCGGCCAGAAATCCGGAGATTTTCTGCTAGGCAGTGGCGAGTACACC
____________________________________________________________
consensus CGCCGTTATATCACCGGCCAGAAATCCGGAGATTTTCTGCTAGGCAGTGGCGAGTACACC