| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002G17 | Sequence | 491 | 002321 (9) | emb|CDP14130.1| | 2e-98 | unnamed protein product [Coffea canephora] | 703 | 002321 (9) | ref|XP_009597032.1| | 6e-101 | PREDICTED: transcription initiation factor IIB-2-like [Nicotiana tomentosiformi |
| JMFF004H11 | Sequence | 222 | 002321 (9) | 759 | 002321 (9) | ref|XP_009597032.1| | 2e-121 | PREDICTED: transcription initiation factor IIB-2-like [Nicotiana tomentosiformi | |||
| JMFF006K20 | Sequence | 280 | 002321 (9) | 757 | 002321 (9) | ref|XP_009597032.1| | 7e-89 | PREDICTED: transcription initiation factor IIB-2-like [Nicotiana tomentosiformi | |||
| JMFN036J04 | Sequence | 607 | 002321 (9) | ref|XP_006351306.1| | 1e-64 | PREDICTED: transcription initiation factor IIB-2-like [Solanum tuberosum] | |||||
| JMSF032B22 | Sequence | 602 | 002321 (9) | ref|XP_006351306.1| | 2e-60 | PREDICTED: transcription initiation factor IIB-2-like [Solanum tuberosum] | 697 | 002321 (9) | ref|XP_009597032.1| | 1e-111 | PREDICTED: transcription initiation factor IIB-2-like [Nicotiana tomentosiformi |
This contig is upended
. : . : . : . : . : . :
rJMFF006K20- AGAAGAAGGATCATGAAAACA
____________________________________________________________
consensus AGAAGAAGGATCATGAAAACA
. : . : . : . : . : . :
rJMFF006K20- ATGTAACAATGAAATTTCAATCCATTAACTAAATAATTCCTTCTCTTTTAAATAATCCCA
rJMSF032B22- AATAATCCCA
rJMFF002G17- AATAATCCCA
rJMFF004H11- ATCCATTAACTAAATAATTCCTTCTCTTTTAAATAATCCCA
____________________________________________________________
consensus ATGTAACAATGAAATTTCAATCCATTAACTAAATAATTCCTTCTCTTTTAAATAATCCCA
. : . : . : . : . : . :
rJMFF006K20- TACCGGTAACCAAATTACCCAGCTAAACTCCTACTGCCTACTGTTTCTGATGCCTCAACC
rJMSF032B22- TACCGGTAACCAAATTACCCAGCTAAACTCCTACTGCCTACTGTTTCTGATGCCTCAACC
rJMFF002G17- TACCGGTAACCAAATTACCCAGCTAAACTCCTACTGCCTACTGTTTCTGATGCCTCAACC
rJMFF004H11- TACCGGTAACCAAATTACCCAGCTAAACTCCTACTGCCTACTGTTTCTGATGCCTCAACC
____________________________________________________________
consensus TACCGGTAACCAAATTACCCAGCTAAACTCCTACTGCCTACTGTTTCTGATGCCTCAACC
. : . : . : . : . : . :
rJMFF006K20- ACACTTGACTCTCGACATCAATTCGAAGGGAAGACTCACTCAGGCTGTGTTTATGCCTTG
rJMSF032B22- ACACTTGACTCTCGACATCAATTCGAAGGGAAGACTCACTCAGGCTGTGTTTATGCCTTG
rJMFF002G17- ACACTTGACTCTCGACATCAATTCGAAGGGAAGACTCACTCAGGCTGTGTTTATGCCTTG
rJMFF004H11- ACACTTGACTCTCGACATCAATTCGAAGGGAAGACTCACTCAGGCTGTGTTTATGCCTTG
____________________________________________________________
consensus ACACTTGACTCTCGACATCAATTCGAAGGGAAGACTCACTCAGGCTGTGTTTATGCCTTG
. : . : . : . : . : . :
rJMFF006K20- GGACTGCAAAGGTTCTTGGTGTCCTTGTCCTTGGTATACCATTCCGGTAAAATTTTTGTA
rJMSF032B22- GGACTGCAAAGGTTCTTGGTGTCCTTGTCCTTGGTATACCATTCCGGTAAAATTTTTGTA
rJMFF002G17- GGACTGCAAAGGTTCTTGGTGTCCTTGTCCTTGGTATACCATTCCGGTAAAATTTTTGTA
rJMFF004H11- GGACTGCAAAGGTTCTTGGTGTCCTTGTCCTTGGTATACCATTCCGGTAAAATTTTTGTA
____________________________________________________________
consensus GGACTGCAAAGGTTCTTGGTGTCCTTGTCCTTGGTATACCATTCCGGTAAAATTTTTGTA
. : . : . : . : . : . :
rJMFF006K20- GCATGGGGATATAGATCCTTGTACGCATTCTTGATGGTCCCCTCTGCAACTGTAGTTGCA
rJMSF032B22- GCATGGGGATATAGATCCTTGTACGCATTCTTGATGGTCCCCTCTGCAACTGTAGTTGCA
rJMFF002G17- GCATGGGGATATAGATCCTTGTACGCATTCTTGATGGTCCCCTCTGCAACTGTAGTTGCA
rJMFF004H11- GCATGGGGATATAGATCCTTGTACGCATTCTTGATGGTCCCCTCTGCAACTGTAGTTGCA
____________________________________________________________
consensus GCATGGGGATATAGATCCTTGTACGCATTCTTGATGGTCCCCTCTGCAACTGTAGTTGCA
. : . : . : . : . : . :
rJMFF006K20- AGTGAAATATCTCTCAATGGTTTCTTTGAATCAGAAAGCTGTGTTATCATGTATATAATT
rJMSF032B22- AGTGAAATATCTCTCAATGGTTTCTTTGAATCAGAAAGCTGTGTTATCATGTATATAATT
rJMFF002G17- AGTGAAATATCTCTCAATGGTTTCTTTGAATCAGAAAGCTGTGTTATCATGTATATAATT
rJMFF004H11- AGTGAAATATCTCTCAATGGTTTCTTTGAATCAGAAAGCTGTGTTATCATGTATATAATT
JMFF002G17+ TATATAATN
____________________________________________________________
consensus AGTGAAATATCTCTCAATGGTTTCTTTGAATCAGAAAGCTGTGTTATCATGTATATAATT
. : . : . : . : . : . :
rJMFF006K20- GCAGCTGCAATAGATATAGGGCTTCTCCTAATGTCAAACTCCTCTGACTTCTGGACAGTC
rJMSF032B22- GCAGCTGCAATAGATATAGGGCTTCTCCTAATGTCAAACTCCTCTGACTTCTGGACAGTC
rJMFF002G17- GCAGCTGCAATAGATATAGGGCTTCTCCTAATGTCAAACTCCTCTGACTTCTGGACAGTC
rJMFF004H11- GCAGCTGCAATAGATATAGGGCTTCTCCTAATGTCAAACTCCTCTGACTTCTGGACAGTC
JMFF002G17+ GCAGCTGCAATAGATATAGGGCTTCTCCTAATGTCAAACTCCTCTGACTTNTGGACAGTC
____________________________________________________________
consensus GCAGCTGCAATAGATATAGGGCTTCTCCTAATGTCAAACTCCTCTGACTTCTGGACAGTC
. : . : . : . : . : . :
rJMFF006K20- TCTTGAACAGCTTTAACTTCTTCATTGCTCATACCAAGATTAGAACAAAAACGTCGCAGA
rJMSF032B22- TCTTGAACAGCTTTAACTTCTCCATTGCTCATACCAAGATTAGAACAAAAACGTCGCAGA
rJMFF002G17- TCTTGAACAGCTTTAACTTCTTCATTGCTCATACCAAGATTAGAACAAAAACGTCGCAGA
rJMFF004H11- TCTTGAACAGCTTTAACTTCTTCATTGCTCATACCAAGATTAGAACAAAAACGTCGCAGA
JMFF002G17+ TCTTGAACAGCTTTAACTTCTTCATTGCTCATACCAAGATTAGAACAAAAACGTCGCAGA
____________________________________________________________
consensus TCTTGAACAGCTTTAACTTCTTCATTGCTCATACCAAGATTAGAACAAAAACGTCGCAGA
. : . : . : . : . : . :
rJMFF006K20- TAGTCCCCTGCATGTATGGTTCCCATCTCCATTGACTCCCCCATTTCAACCTTCAATTGT
rJMSF032B22- TAGTCCCCTGCATGTATGGTTCCCATCTCCATTGACTCCCCCATTTCAACCTTCAATTGT
rJMFF002G17- TAGTCCCCTGCATGTATGGTTCCCATCTCCATTGACTCCCCCATTTCAACCTTCAATTGT
rJMFF004H11- TAGTCCCCTGCATGTATGGTTCCCATCTCCATTGACTCCCCCATTTCAACCTTCAATTGT
JMFF002G17+ TAGTCCCCTGCATGTATGGTTCCCATCTCCATTGACTCCCCCATTTCAACCTTCAATTGT
____________________________________________________________
consensus TAGTCCCCTGCATGTATGGTTCCCATCTCCATTGACTCCCCCATTTCAACCTTCAATTGT
. : . : . : . : . : . :
rJMFF006K20- TTCACAATGAATTCTTTTGCTCGACCAATTTCCTTCTTTGTGGCTCCATTGGCAATCGAG
rJMSF032B22- TTCACAATGAATTCTTTTGCTCGACCAATTTCCTTCTTTGTGGCTCCATTGGCAATCGAG
rJMFF002G17- TTCACAATGAATTCTTTTGCTCGACCAATTTCCTTCTTTGTGGCTCCATTGGCAATCGAG
rJMFF004H11- TTCACAATGAATTCTTTTGCTCGACCAATTTCCTTCTTTGTGGCTCCATTGGCAATCGAG
JMFF002G17+ TTCACAATGAATTCTTTTGCTCGACCAATTTCCTTCTTTGTGGCTCCATTGGCAATCGAG
____________________________________________________________
consensus TTCACAATGAATTCTTTTGCTCGACCAATTTCCTTCTTTGTGGCTCCATTGGCAATCGAG
. : . : . : . : . : . :
rJMFF006K20- CAAATTTCTTTTACTGTGCGAGGTTTGCCTTCTTGTCGACAGGGCAATATAAATGCAAGC
rJMSF032B22- CAAATTTCTTTTACTGTGCGAGGTTTGCCTTCTTGTCGACA-GGCAATATAAATGCAAGC
rJMFF002G17- CAAATTTCTTTTACTGTGCGAGGTTTGCCTTCTTGTCGACA-GGCAATATAAATGCAAGC
rJMFF004H11- CAAATTTCTTTTACTGTGCGAGGTTTGCCTTCTTGTCGACA-GGCAATATAAATGCAAGC
JMFF002G17+ CAAATTTCTTTTACTGTGCGAGGTTTGCCTTCTTGTCGACA-GGCAATATAAATGCAAGC
____________________________________________________________
consensus CAAATTTCTTTTACTGTGCGAGGTTTGCCTTCTTGTCGACA-GGCAATATAAATGCAAGC
. : . : . : . : . : . :
rJMFF006K20- AGCCACCAAAGCATCCAGATTTCTT-CCCCTTGTACACTTCTGGTCTTCCAACCTTTTAT
rJMSF032B22- AGCCACCAAAGCATCCAGATTTCTT-CCCCTTGTACACTTCTGGTCTTCCAACCTTTTAT
rJMFF002G17- AGCCACCAAAGCATCCAGATTTCTTCCCCCTTGTACACTTCTGGTCTTCCAACCTTTTAT
rJMFF004H11- AGCCACCAAAGCATCCAGATTTCTT-CCCCTTGTACACTTCTGGTCTTCCAACCTTTTAT
JMFF002G17+ AGCCACCAAAGCATCCAGATTTCTT-CCCCTTGTACACTTCTGGTCTTCCAACCTTTTAT
____________________________________________________________
consensus AGCCACCAAAGCATCCAGATTTCTT-CCCCTTGTACACTTCTGGTCTTCCAACCTTTTAT
. : . : . : . : . : . :
rJMFF006K20- AAATCTCACTTGCACG
rJMSF032B22- AAATCTCACTTGCAC
rJMFF002G17- AAATCTCACTTGCACG
rJMFF004H11- AAATCTCACTTGCACGATCCTTTATAGTAGCAACAAGGCTCAACCTATCAGCCA
JMFF002G17+ AAATCTCACTTGCACGATCCTTTATAGTAGCAACAAGGCTCAACCTATCAGCCATGTTAG
JMFN036J04+ AGTAGCAACAAGGCTCAACCTATCAGCCATGTTAG
____________________________________________________________
consensus AAATCTCACTTGCACGATCCTTTATAGTAGCAACAAGGCTCAACCTATCAGCCATGTTAG
. : . : . : . : . : . :
JMFF002G17+ CTATGGCTTTGAAAGCCATAACGAGTGCTCGGTCAGGATCACCGCCCCGATTCTGCAAGC
JMFN036J04+ CTATGGC-TTGAAAGCCATAACGAGTGCTCGGTCAGGATCACCGCCCCGATTCTGCAAGC
JMSF032B22+ TGAAAGCCATAANGAGTGCTCGGTCAGGATCACCGCCCCGATTCTGCAAGC
____________________________________________________________
consensus CTATGGCTTTGAAAGCCATAACGAGTGCTCGGTCAGGATCACCGCCCCGATTCTGCAAGC
. : . : . : . : . : . :
JMFF002G17+ G
JMFN036J04+ GGGCCACAGAAGCGTCGCCATTAGAATTTGGGCCCTTGGAAATGACGGTGGAGAGGCCAA
JMSF032B22+ GGGCCACAGAAGNGTCGCCANTAGAATTTGGGCCCNNGGAAANGACGGTGGAGAGGCCAA
____________________________________________________________
consensus GGGCCACAGAAGCGTCGCCATTAGAATTTGGGCCCTTGGAAATGACGGTGGAGAGGCCAA
. : . : . : . : . : . :
JMFN036J04+ CATCGCCGAGCAAGGGGTTAACGGGTCCTCCAACACGGTTCGGGTCGTGATCACCAGAAT
JMSF032B22+ CATCGCCGAGCAAGGGGTTAACGGGTCCTCCAACACGGTTCGGGTCGTGATCACCAGAAT
____________________________________________________________
consensus CATCGCCGAGCAAGGGGTTAACGGGTCCTCCAACACGGTTCGGGTCGTGATCACCAGAAT
. : . : . : . : . : . :
JMFN036J04+ CATCTGCAAACGTACGCCACTCAGATGTCTCGTCGATGGAGCGGGATTCAAGCACGAGCC
JMSF032B22+ CATCTGCAAACGTACGCCACTCAGATGTCTCGTCGANGGAGCGGGATTCAAGCACGAGCC
____________________________________________________________
consensus CATCTGCAAACGTACGCCACTCAGATGTCTCGTCGATGGAGCGGGATTCAAGCACGAGCC
. : . : . : . : . : . :
JMFN036J04+ CGCACTCGGAGCAGACGGTGTCCCCGGCGGCGTGGTCGAACACCACCTCCGTGTTTTTCT
JMSF032B22+ CGCACTCGGAGCAGACGGTGTCCCCGGCGGCGTGGTCGAACACCACCTCCGTGTTTTTCT
____________________________________________________________
consensus CGCACTCGGAGCAGACGGTGTCCCCGGCGGCGTGGTCGAACACCACCTCCGTGTTTTTCT
. : . : . : . : . : . :
JMFN036J04+ TGCAGTCCGAACAGTAGGAGTCAGCCATAAGATCAGATCCGATTGAATTCCCAAACTGAA
JMFF006K20+ TAGGAGTCANCCATAAGATCAGATCCGANNGAATTCCCANACTGAA
JMSF032B22+ TGCAGTCCGAACAGTAGGAGTCAGCCATAAGATCAGATCCGANTGAATTCCCAAACTGAA
____________________________________________________________
consensus TGCAGTCCGAACAGTAGGAGTCAGCCATAAGATCAGATCCGATTGAATTCCCAAACTGAA
. : . : . : . : . : . :
JMFN036J04+ AAACCCTAGAACGCAGCAATCGGTGCTCGGTGCTTTATTTATATATATATATATATATCG
JMFF006K20+ AAACCCTAGAACGCAGCANTCGGTGCTCGGTGCTTTATTTATATATATATATATATATCG
JMFF004H11+ TCGGTGCTCGGTGCTTTATTTATATATATATATATATATCG
JMSF032B22+ AAACCCTAGAACGCAGCANTCGGTGCTCGGTGCTTTATTTATATATATATATATATATCG
____________________________________________________________
consensus AAACCCTAGAACGCAGCAATCGGTGCTCGGTGCTTTATTTATATATATATATATATATCG
. : . : . : . : . : . :
JMFN036J04+ AGAAACAAGTATATGTATATATTTATGTTGAGTAGAGTCTAGAGAGCCACAGAAGGGGGA
JMFF006K20+ AGAAACAAGTATATGTATATATTTATGTTGAGTAGAGTCTAGAGAGAGACAGAAGGGGGA
JMFF004H11+ AGAAACAAGTATATGTATATATTTATGTTGAGTAGAGTCTAGAGAGAGACAGAAGGGGGA
JMSF032B22+ AGAAACAAGTATATGTATATATTTATGTTGAGTAGAGTCTAGAGAGAGACAGAAGGGGGA
____________________________________________________________
consensus AGAAACAAGTATATGTATATATTTATGTTGAGTAGAGTCTAGAGAGAGACAGAAGGGGGA
. : . : . : . : . : . :
JMFN036J04+ AGAAGGTTTTTGTTGTTTTTGATCTTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTTCTC
JMFF006K20+ AGAAGGTTTTTGTTGTTTTTGATCTTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTTCTC
JMFF004H11+ AGAAGGTTTTTGTTGTTTTTGATCTTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTTCTC
JMSF032B22+ AGAAGGTTTTTGTTGTTTTTGATCTTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTTCTC
____________________________________________________________
consensus AGAAGGTTTTTGTTGTTTTTGATCTTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTTCTC
. : . : . : . : . : . :
JMFN036J04+ TCTCTCTCTTTCTTACCAAGCTGTCTTTGGTAA
JMFF006K20+ TCTCTCTCTTTCTTACCAAGCTGTCTTTGGTAATTGGTATGGGAGAGAAGAAGT
JMFF004H11+ TCTCTCTCTTTCTTACCAAGCTGTCTTTGGTAATTGGTATGGGAGAGAAGAAGT
JMSF032B22+ TCTCTCTCTTTCTTACCAAGCTGTCTTTGGTAATTGGTATGGGAGAGAAGAAGTAAACCC
____________________________________________________________
consensus TCTCTCTCTTTCTTACCAAGCTGTCTTTGGTAATTGGTATGGGAGAGAAGAAGTAAACCC