Contig 002286:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN037L18Sequence136002286 (3)ref|XP_009803066.1|3e-08PREDICTED: transcription factor bHLH3 [Nicotiana sylvestris] ref|XP_009803067.1|
JMSF028D18Sequence645002286 (3)ref|XP_009631111.1|2e-34PREDICTED: transcription factor bHLH3 [Nicotiana tomentosiformis] ref|XP_0096311728001429 (2)ref|XP_006352746.1|2e-62PREDICTED: transcription factor bHLH3-like isoform X1 [Solanum tuberosum] ref|X
JMSF036E20Sequence636002286 (3)ref|XP_009631111.1|1e-35PREDICTED: transcription factor bHLH3 [Nicotiana tomentosiformis] ref|XP_0096311724001429 (2)ref|XP_006352746.1|7e-59PREDICTED: transcription factor bHLH3-like isoform X1 [Solanum tuberosum] ref|X

Alignment

This contig is upended


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JMSF036E20+                                    TCAGACCCCCCAAAGGAAGCCTGAACCATTTCAAG
                      ____________________________________________________________
consensus                                      TCAGACCCCCCAAAGGAAGCCTGAACCATTTCAAG
 
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JMSF036E20+           AGCTTGCTTTCTCTTATCTCCATTGATGACTGAGCTCCCATTAACGCCCCCGTTCTCGTC
                      ____________________________________________________________
consensus             AGCTTGCTTTCTCTTATCTCCATTGATGACTGAGCTCCCATTAACGCCCCCGTTCTCGTC
 
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JMSF036E20+           TTTGTTCTTCCTCCTAATGGCTTCTGGGCAATGCCCATCACCCCAAATCAAGGCAGATTT
JMFN037L18-                                          TGCCCATCACCCCAAATCAAGGCAGATTT
JMSF028D18+                          AATGGCTTCTGGGCAATGCCCATCACCCCAAATCAAGGCAGATTT
                      ____________________________________________________________
consensus             TTTGTTCTTCCTCCTAATGGCTTCTGGGCAATGCCCATCACCCCAAATCAAGGCAGATTT
 
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JMSF036E20+           CCCAGATTTTGACTTTGCAACTTGCCAGTAAATGGCATAAGTCCAATCAGACCCTTCAAC
JMFN037L18-           CCCAGATTTCGACTTGGCAACTTGCCAATAGATGGCA                       
JMSF028D18+           CCCAGATTTTGACTTTGCAACTTGCCAGTAAATGGCATAAGTCCAATCAGACCCTTCAAC
                      ____________________________________________________________
consensus             CCCAGATTTTGACTTTGCAACTTGCCAGTAAATGGCATAAGTCCAATCAGACCCTTCAAC
 
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JMSF036E20+           TATCTTCTGCAGCCCCACCTGCACCCCCAAATTCCCACCTGAAACACTGAACTCTGAATT
JMSF028D18+           TATCTTCTGCAGCCCCACCTGCACCCCCAAATTCCCACCTGAAACACTGAACTCTGAATT
                      ____________________________________________________________
consensus             TATCTTCTGCAGCCCCACCTGCACCCCCAAATTCCCACCTGAAACACTGAACTCTGAATT
 
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JMSF036E20+           CATGTTATTCAAACCTAACCAGCTGAAAAATTCCACTGCTTCACTTCCCAAAACCCCTTC
JMSF028D18+           CATGTTATTCAAACCTAACCAGCTGAAAAATTCCACTGCTTCACTTCCCAAAACCCCTTC
                      ____________________________________________________________
consensus             CATGTTATTCAAACCTAACCAGCTGAAAAATTCCACTGCTTCACTTCCCAAAACCCCTTC
 
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JMSF036E20+           CATCACAGCCCTATCCTCTTCATTCAGACAAAATTTCTTCTTCCCCATCTTACTCAAACC
JMSF028D18+           CATCACAGCCCTATCCTCTTCATTCAGACAAAATTTCTTCTTCCCCATCTTACTCAAACC
                      ____________________________________________________________
consensus             CATCACAGCCCTATCCTCTTCATTCAGACAAAATTTCTTCTTCCCCATCTTACTCAAACC
 
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JMSF036E20+           TCTCACTTCCAATTTCCAATCAAATGAATCCCATCAAATCTATACAATTCCCAGAAAATC
JMSF028D18+           TCTCACTTCCAATTTCCAATCAAATGAATCCCATCAAATCTATACAATTCCCAGAAAATC
                      ____________________________________________________________
consensus             TCTCACTTCCAATTTCCAATCAAATGAATCCCATCAAATCTATACAATTCCCAGAAAATC
 
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JMSF036E20+           TTGAAATCCCCAATGGGACACCTTATCAACAAAAGCAAAACTTTGACCCAATACACAAAA
JMSF028D18+           TTGAAATCCCCAATGGGACACCTTATCAACAAAAGCAAAACTTTGACCCAATACACAAAA
                      ____________________________________________________________
consensus             TTGAAATCCCCAATGGGACACCTTATCAACAAAAGCAAAACTTTGACCCAATACACAAAA
 
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JMSF036E20+           ACAGCCCTTTCAAAGACAGACAAGAATAAAAACACAGACTTTAACACTTCAATAGCTGGG
JMSF028D18+           ACAGCCCTTTCAAAGACAGACAAGAATAAAAACACAGACTTTAACACTTCAATAGCTGGG
                      ____________________________________________________________
consensus             ACAGCCCTTTCAAAGACAGACAAGAATAAAAACACAGACTTTAACACTTCAATAGCTGGG
 
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JMSF036E20+           TTGAAGCAGATTTACCTTAAACCTGAACTGAAATGAAGAAAAGCTTGATTCTTGACGAAT
JMSF028D18+           TTGAAGCAGATTTACCTTAAACCTGAACTGAAATGAAGAAAAGCTTGATTCTTGACGAAT
                      ____________________________________________________________
consensus             TTGAAGCAGATTTACCTTAAACCTGAACTGAAATGAAGAAAAGCTTGATTCTTGACGAAT
 
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JMSF028D18+           GGGTTTCTTTCTCTCAACTCTTCTCCTCAAGTAAACCCTAATTCAATGGACGAGAATGAA
                      ____________________________________________________________
consensus             GGGTTTCTTTCTCTCAACTCTTCTCCTCAAGTAAACCCTAATTCAATGGACGAGAATGAA
 
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JMSF028D18+           GTGGGTTCCAAGAAAAAGGATAGGGAAGGCTGTTTGTGGAGAAAGGTTCAGTGAATCACC
                      ____________________________________________________________
consensus             GTGGGTTCCAAGAAAAAGGATAGGGAAGGCTGTTTGTGGAGAAAGGTTCAGTGAATCACC