Contig 002274:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010E11Sequence358002274 (4)730005703 (5)ref|XP_011099269.1|3e-15PREDICTED: BEL1-like homeodomain protein 4 [Sesamum indicum]
JMSF024L07Sequence627002274 (4)647005703 (5)ref|XP_011099269.1|5e-20PREDICTED: BEL1-like homeodomain protein 4 [Sesamum indicum]
JMSF027D23Sequence637002274 (4)244005703 (5)
JMSF033J05Sequence663002274 (4)679005703 (5)ref|XP_011099269.1|2e-06PREDICTED: BEL1-like homeodomain protein 4 [Sesamum indicum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF024L07+ CCCTGCTGATGAATTCTCATA
JMSF033J05+ AAATCCCTGCTGATGAATTCTCATA
                      ____________________________________________________________
consensus AAATCCCTGCTGATGAATTCTCATA
 
. : . : . : . : . : . :
JMSF024L07+ GACGACGCCGCAGCAGCAGCGGCGGCGGCCGCGGATCTCTGGTAATCATTCTGGGAACTG
JMSF033J05+ GACGACGCCGCAGCAGCAGCGGCGGCGGCCGCGGATCTCTGGTAATCATTCTGGGAACTG
JMSF027D23+ GCCGCGGATCTCTGGTAATCATTCTGGGAACTG
                      ____________________________________________________________
consensus GACGACGCCGCAGCAGCAGCGGCGGCGGCCGCGGATCTCTGGTAATCATTCTGGGAACTG
 
. : . : . : . : . : . :
JMSF024L07+ TAAAATTCCTGGTGATGATGAGGGTATCCTTGGGACATGGAATTAACAATTCTGTGGAAC
JMSF033J05+ TAAAATTCCTGGTGATGATGAGGGTATCCTTGGGACATGGAATTAACAATTCTGTGGAAC
JMSF027D23+ TAAAATTCCTGGTGATGATGAGGGTATCCTTGGGACATGGAATTAACAATTCTGTGGAAC
                      ____________________________________________________________
consensus TAAAATTCCTGGTGATGATGAGGGTATCCTTGGGACATGGAATTAACAATTCTGTGGAAC
 
. : . : . : . : . : . :
JMSF024L07+ CAAAACCTAGTAGTGCCGGTGTTCTCGGGTTAAAACACAACAATTTTAGTAAAATCATAA
JMSF033J05+ CAAAACCTAGTAGTGCCGGTGTTCTCGGGTTAAAACACAACAATTTTAGTAAAATCATAA
JMSF027D23+ CAAAACCTAGTAGTGCCGGTGTTCTCGGGTTAAAACACAACAATTTTAGTAAAATCATAA
                      ____________________________________________________________
consensus CAAAACCTAGTAGTGCCGGTGTTCTCGGGTTAAAACACAACAATTTTAGTAAAATCATAA
 
. : . : . : . : . : . :
JMSF024L07+ ATCTCTGAACCCTTTTCTCCTCTCGAACCTGTAAACGAAGCAAGGATGGATCTAGACGAA
JMSF033J05+ ATCTCTGAACCCTTTTCTCCTCTCGAACCTGTAAACGAAGCAAGGATGGATCTAGACGAA
JMSF010E11+ CTCGAACCTGTAAACGAAGCAAGGATGGATCTAGACGAA
JMSF027D23+ ATCTCTGAACCCTTTTCTCCTCTCGAACCTGTAAACGAAGCAAGGATGGATCTAGACGAA
                      ____________________________________________________________
consensus ATCTCTGAACCCTTTTCTCCTCTCGAACCTGTAAACGAAGCAAGGATGGATCTAGACGAA
 
. : . : . : . : . : . :
JMSF024L07+ AGGGTGCAGAAGCCCAGAAACATCATTTTCTCACTGGCAGTGAAAGAGAACAAGACTCTG
JMSF033J05+ AGGGTGCAGAAGCCCAGAAACATCATTTTCTCACTGGCAGTGAAAGAGAACAAGACTCTG
JMSF010E11+ AGGGTGCAGAAGCCCAGAAACATCATTTTCTCACTGGCAGTGAAAGAGAACAAGACTCTG
JMSF027D23+ AGGGTGCAGAAGCCCAGAAACATCATTTTCTCACTGGCAGTGAAAGAGAACAAGACTCTG
                      ____________________________________________________________
consensus AGGGTGCAGAAGCCCAGAAACATCATTTTCTCACTGGCAGTGAAAGAGAACAAGACTCTG
 
. : . : . : . : . : . :
JMSF024L07+ AACATGGGAACTGCGATGATCCTTGCGCTTCTTCAATTCAAGCGTACACTGTGAAGAAGG
JMSF033J05+ AACATGGGAACTGCGATGATCCTTGCGCTTCTTCAATTCAAGCGTACACTGTGAAGAAGG
JMSF010E11+ AACATGGGAACTGCGATGATCCTTGCGCTTCTTCAATTCAAGCGTACACTGTGAAGAAGG
JMSF027D23+ AACATGGGAACTGCGATGATCCTTGCGCTTCTTCAATTCAAGCGTACACTGTGAAGAAGG
                      ____________________________________________________________
consensus AACATGGGAACTGCGATGATCCTTGCGCTTCTTCAATTCAAGCGTACACTGTGAAGAAGG
 
. : . : . : . : . : . :
JMSF024L07+ AATCTTCAATCTTTAATCCCCTCTTGTTATTATGATTATTATAATCAATGGAAAGTATGG
JMSF033J05+ AATCTTCAATCTTTAATCCCCTCTTGTTATTATGATTATTATAATCAATGGAAAGTATGG
JMSF010E11+ AATCTTCAATCTTTAATCCCCTCTTGTTATTATGATTATTATAATCAATGGAAAGTATGG
JMSF027D23+ AATCTTCAATCTTTAATCCCCTCTTGTTATTATGATTATTATAATCAATGGAAAGTATGG
                      ____________________________________________________________
consensus AATCTTCAATCTTTAATCCCCTCTTGTTATTATGATTATTATAATCAATGGAAAGTATGG
 
. : . : . : . : . : . :
JMSF024L07+ AGACAGTACAGTAAAACATACTGATTTCCCAATCCAACAAGAAATTCAGGCCATCGATCA
JMSF033J05+ AGACAGTACAGTAAAACATACTGATTTCCCAATCCAACAAGAAATTCAGGCCATCGATCA
JMSF010E11+ AGACAGTACAGTAAAACATACTGATTTCCCAATCCAACAAGAAATTCAGGCCATCGATCA
JMSF027D23+ AGACAGTACAGTAAAACATACTGATTTCCCAATCCAACAAGAAATTCAGGCCATCGATCA
                      ____________________________________________________________
consensus AGACAGTACAGTAAAACATACTGATTTCCCAATCCAACAAGAAATTCAGGCCATCGATCA
 
. : . : . : . : . : . :
JMSF024L07+ GGCTGGGATATATGTGGGAATTGAAGATAGATAATGAAAGGAGAGAAAGCTCAGAAGAAA
JMSF033J05+ GGCTGGGATATATGTGGGAATTGAAGATAGATAATGAAAGGAGAGAAAGCTCAGAAGAAA
JMSF010E11+ GGCTGGGATATATGTGGGAATTGAAGATAGATAATGAAAGGAGAGAAAGCTCAGAAGAAA
JMSF027D23+ GGCTGGGATATATGTGGGAATTGAAGATAGATAATGAAAGGAGAGAAAGCTCAGAAGAAA
                      ____________________________________________________________
consensus GGCTGGGATATATGTGGGAATTGAAGATAGATAATGAAAGGAGAGAAAGCTCAGAAGAAA
 
. : . : . : . : . : . :
JMSF024L07+ ATTAAAGCTAAGGTCGCCTTCTTTCTTTCTGCTGTTGCTGCTTCTTCTTCTCCTTCTTCT
JMSF033J05+ ATTAAAGCTAAGGTCGCCTTCTTTCTTTCTGCTGTTGCTGCTTCTTCTTCTCCTTCTTCT
JMSF010E11+ ATTAAAGCTAAGGTCGCC
JMSF027D23+ ATTAAAGCTAAGGTCGCCTTCTTTCTTTCTGCTGTTGCTGCTTCTTCTTCTCCTTCTTCT
                      ____________________________________________________________
consensus ATTAAAGCTAAGGTCGCCTTCTTTCTTTCTGCTGTTGCTGCTTCTTCTTCTCCTTCTTCT
 
. : . : . : . : . : . :
JMSF024L07+ CT
JMSF033J05+ CTCCCACTTCGCTTTCACCAACCTTTTCTATATATGT
JMSF027D23+ CTCCCACTTCGCTTTCACCAACCTTTTCTATATATGTAATACTATAATTTACTAACTTCC
                      ____________________________________________________________
consensus CTCCCACTTCGCTTTCACCAACCTTTTCTATATATGTAATACTATAATTTACTAACTTCC