Contig 002268:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS045A03+                                                                    GGG
                      ____________________________________________________________
consensus                                                                      GGG
 
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JMFS045A03+           TGCTGCTGGGNAGATAAGCTCAAGGACAGCCCCTGTTGAGCTGTCGGTGACACCACCACC
                      ____________________________________________________________
consensus             TGCTGCTGGGNAGATAAGCTCAAGGACAGCCCCTGTTGAGCTGTCGGTGACACCACCACC
 
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JMFS144E10+                              GGGACGCAAAGTCGGTGGTTCCGCCGCCGCCGGAGACCACC
JMFS045A03+           GACNTATGGAACCCCAGCTGGGACGCAAAGTCGGTGGTTCCGCCGCCGCCGGAGACCACC
JMFS071H09+                                        GTCGGTGGTTCCGCCGCCGCCGGAGACCACC
                      ____________________________________________________________
consensus             GACNTATGGAACCCCAGCTGGGACGCAAAGTCGGTGGTTCCGCCGCCGCCGGAGACCACC
 
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JMFS144E10+           GCAGAGGGTATTTGCTGACCGCCGCTTCCACTCCCGGCTTGCTCCAAACCCGCCCACAAA
JMFS045A03+           GCAGAGGGTATTTGCTGACCGCCGCTTCCACTCCCGGCTTGCTCCAAACCCGCCCACAAA
JMFS071H09+           GCAGAGGGTATTTGCTGACCGCCGCTTCCACTCCCGGCTTGCTCCAAACCCGCCCACAAA
                      ____________________________________________________________
consensus             GCAGAGGGTATTTGCTGACCGCCGCTTCCACTCCCGGCTTGCTCCAAACCCGCCCACAAA
 
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JMFS144E10+           CTCCGGGCCGGGTCATGAAGCTGCGCCGATCCAAGAGCCGACGCCGGGAGAGGCACGCCG
JMFS045A03+           CTCCGGGCCGGGTCATGAAGCTGCGCCGATCCAAGAGCCGACGCCGGGAGAGGCACGCCG
JMFS071H09+           CTCCGGGCCGGGTCATGAAGCTGCGCCGATCCAAGAGCCGACGCCGGGAGAGGCACGCCG
                      ____________________________________________________________
consensus             CTCCGGGCCGGGTCATGAAGCTGCGCCGATCCAAGAGCCGACGCCGGGAGAGGCACGCCG
 
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JMFS144E10+           ACAAAGTGCTGGGATTGAGGAAGCCGCGCGTGAGGCATACCCCCCGCATGAAGCGCGTTT
JMFS045A03+           ACAAAGTGCTGGGATTGAGGAAGCCGCGCGTGAGGCATACCCCCCGCATGAAGCGCGTTT
JMFS071H09+           ACAAAGTGCTGGGATTGAGGAAGCCGCGCGTGAGGCATACCCCCCGCATGAAGCGCGTTT
                      ____________________________________________________________
consensus             ACAAAGTGCTGGGATTGAGGAAGCCGCGCGTGAGGCATACCCCCCGCATGAAGCGCGTTT
 
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JMFS144E10+           CCGGAGTTCAAGAACATCGCCTGCTGTGATTGCGGCAGTGCAGTGTCAGAGAACCCAATA
JMFS045A03+           CCGGAGTTCAAGAACATCGCCTGCTGTGATTGCGGCAGTGCAGTGTCAGAGAACCCAATA
JMFS071H09+           CCGGAGTTCAAGAACATCGCCTGCTGTGATTGCGGCAGTGCAGTGTCAGAGAACCCAATA
                      ____________________________________________________________
consensus             CCGGAGTTCAAGAACATCGCCTGCTGTGATTGCGGCAGTGCAGTGTCAGAGAACCCAATA
 
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JMFS144E10+           TAGTTAGGGTTCATCAGATAAAGCGTCTGCAAACCATCACCTTGGACTTCCGAGCTTCCT
JMFS045A03+           TAGTTAGGGTTCATCAGATAAAGCGTCTGCAAACCATCACCTTGGACTTCCGAGCTTCCT
JMFS071H09+           TAGTTAGGGTTCATCAGATAAAGCGTCTGCAAACCATCACCTTGGACTTCCGAGCTTCCT
                      ____________________________________________________________
consensus             TAGTTAGGGTTCATCAGATAAAGCGTCTGCAAACCATCACCTTGGACTTCCGAGCTTCCT
 
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JMFS144E10+           TGATAGTACATAGCCATAAATTTTCTTCTTTTTTCTTTAAAATTCCCTTTTTTTTTTTTT
JMFS045A03+           TGATAGTACATAGCCATAAATTTTCTTCTTTTTTCTTTAAAATTCCCTTTTTTTTTTTTT
JMSF009M18+                                       TTTTTTNTTTAAAANTCCCNTTTTTTTTTTTT
JMSF021P16+                                       TTTTTTNTTTAAAANTCCCNTTTTTTTTTTTT
JMSF004D02+                                       TTTTTTNTTTAANATTCCCCTTTTTTTTTTTT
JMFS071H09+           TGATAGTACATAGCCATAAATTTTCTTCTTTTTTCTTTAAAATTCCCTTTTTTTTTTTTT
JMSF026J15+                                                                TTTTTTT
                      ____________________________________________________________
consensus             TGATAGTACATAGCCATAAATTTTCTTCTTTTTTCTTTAAAATTCCCTTTTTTTTTTTTT
 
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JMFS144E10+           TTTCTAAAAGAACCGTTTAAGTGTTTAAGCCATCAACATAATGGAGTTGCTTCAATTCCT
JMFS045A03+           TTTCTAAAAGAACCGTTTAAGTGTTTAAGCCATCAACATAATGGAGTTGCTTCAATTCCT
JMSF009M18+           TTTCTAAAAGAACCGTTTAAGTGTTTAAGCCATCAACATAATGGAGTTGCTTCAATTCCT
JMSF021P16+           TTTCTAAAAGAACCGTTTAAGTGTTTAAGCCATCAACATAATGGAGTTGCTTCAATTCCT
JMSF004D02+           TTTCTAAAAGAACCGTTTAAGTGTTTAAGCCATCAACATAATGGAGTTGCTTCAATTCCT
JMFS071H09+           TTTCTAAAAGAACCGTTTAAGTGTTTAAGCCATCAACATAATGGAGTTGCTTCAATTCCT
rJMSF026J15-                                                   TGGAGTTGCTTCAATTCCT
JMSF026J15+           TTTCTAAAAGAACCGTTTAAGTGTTTAAGCCATCAACATAATGGAGTTGCTTCAATTCCT
                      ____________________________________________________________
consensus             TTTCTAAAAGAACCGTTTAAGTGTTTAAGCCATCAACATAATGGAGTTGCTTCAATTCCT
 
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JMFS144E10+           TCTGGTGCTGACAAAAC                                           
JMFS045A03+           TCTGGTGCTGACAAAACCTGAAAGAAAGTAAGAGAAAAGATAGGAAA             
JMSF009M18+           TCTGGTGCTGACAAAACCTGAAAGAAAGTAAGAGAAAAGATAGGAAACATGTTTGGAACA
JMSF021P16+           TCTGGTGCTGACAAAACCTGAAAGAAAGTAAGAGAAAAGATAGGAAACATGTTTGGAACA
JMSF004D02+           TCTGGTGCTGACAAAACCTGAAAGAAAGTAAGAGAAAAGATAGGAAACATGTTTGGAACA
JMFS071H09+           TCTGGTGCTGACAAAACCTGAAAGAAAGTAAGAGAAAAGATAGGAAACATGTTTGGAACA
rJMSF026J15-          TCTGGTGCTGACAAAACCTGAAAGAAAGTAAGAGAAAAGATAGGAAACATGTTTGGAACA
JMSF026J15+           TCTGGTGCTGACAAAACCTGAAAGAAAGTAAGAGAAAAGATAGGAAACATGTTTGGAACA
                      ____________________________________________________________
consensus             TCTGGTGCTGACAAAACCTGAAAGAAAGTAAGAGAAAAGATAGGAAACATGTTTGGAACA
 
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JMSF009M18+           GAAATCATGAGATC                                              
JMSF021P16+           GAAATCAT                                                    
JMSF004D02+           GAAATCA                                                     
JMFS071H09+           GAAATCATGAGATCATAGAACTGAATCCCATGATATAAATATTGAAGAAGTTGGGTTAGT
rJMSF026J15-          GAAATCATGAGATCATAGAACTGAATCCCATGATATAAATATTGAAGAAGTTGGGTTAGT
JMSF026J15+           GAAATCATGAGATCATAGAACTGAATCCCNTGATATAAATATTGAAGAAGTTGGGTTAGT
                      ____________________________________________________________
consensus             GAAATCATGAGATCATAGAACTGAATCCCATGATATAAATATTGAAGAAGTTGGGTTAGT
 
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JMFS071H09+           TAGGTAATTAATAATCAAG                                         
rJMSF026J15-          TAGGTAATTAATAATCAAGAAAAAGTTGAATTATATGCTACCCGGAAGCAAGCTTATATG
JMSF026J15+           TAGGTAATTAATAATCAAGAAAAAGTTGAATTATATGCTACCCGGAAGCAAGCTTATATG
                      ____________________________________________________________
consensus             TAGGTAATTAATAATCAAGAAAAAGTTGAATTATATGCTACCCGGAAGCAAGCTTATATG
 
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rJMSF026J15-          AGAGTTGGAATATATATAAAGAAAGAGAGCGATATATATGGGTATAAATATACATATATA
JMSF026J15+           AGAGTTGGAATATATATAAAGAAAGAGAGCGATATATATGGGTATAAATATACATATATA
                      ____________________________________________________________
consensus             AGAGTTGGAATATATATAAAGAAAGAGAGCGATATATATGGGTATAAATATACATATATA
 
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rJMSF026J15-          TAATTCTCTTACAGTGACATGAAAAAGCCATTAAAATCAAGGATCATCCATCCACCAGAC
JMSF026J15+           TAATTCTCTTACAGTGACATGAAAAAGCCATTAAAATCAAGGATCATCCATCCACCAGAC
                      ____________________________________________________________
consensus             TAATTCTCTTACAGTGACATGAAAAAGCCATTAAAATCAAGGATCATCCATCCACCAGAC
 
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rJMSF026J15-          GACAGAGTACAGGGATGTATGAAAAGAAAAAAGAAAAGCAAAAATATATAATGAAATCAA
JMSF026J15+           GACAGAGTACAGGGATGTATGAAAAGAAAAAAGAAAAGCAAAAATATATAATGAAATCAN
                      ____________________________________________________________
consensus             GACAGAGTACAGGGATGTATGAAAAGAAAAAAGAAAAGCAAAAATATATAATGAAATCAA
 
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rJMSF026J15-          GAAAAGGAGAGAGAAAGGTAGAGAGAGAGAGAGAGAGAGGAGTGTTGCAGTAGAGAGAC 
JMSF026J15+           GAAAAGGAGAGAGAAAGGTAGAGAGAGAGAGAGAGAGAGGAGTGTTGCAGTAGAGAGACC
                      ____________________________________________________________
consensus             GAAAAGGAGAGAGAAAGGTAGAGAGAGAGAGAGAGAGAGGAGTGTTGCAGTAGAGAGACC