| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005K05 | Sequence | 520 | 002260 (11) | emb|CDP14458.1| | 5e-64 | unnamed protein product [Coffea canephora] | 779 | 002260 (11) | ref|XP_009611685.1| | 8e-63 | PREDICTED: uncharacterized protein At1g32220, chloroplastic-like isoform X1 [Ni |
| JMFF046H21 | Sequence | 557 | 002260 (11) | emb|CDP14458.1| | 1e-72 | unnamed protein product [Coffea canephora] | 401 | 002260 (11) | ref|XP_006357060.1| | 4e-05 | PREDICTED: uncharacterized protein At1g32220, chloroplastic-like isoform X1 [So |
| JMFN010I10 | Sequence | 624 | 002260 (11) | emb|CDP14458.1| | 1e-90 | unnamed protein product [Coffea canephora] | |||||
| JMSF012K06 | Sequence | 511 | 002260 (11) | emb|CDP14458.1| | 6e-64 | unnamed protein product [Coffea canephora] | 725 | 002260 (11) | ref|XP_009611686.1| | 6e-99 | PREDICTED: uncharacterized protein At1g32220, chloroplastic-like isoform X2 [Ni |
| JMSF025P11 | Sequence | 707 | 002260 (11) | emb|CDP14458.1| | 2e-99 | unnamed protein product [Coffea canephora] | 726 | 002260 (11) | ref|XP_009611685.1| | 2e-59 | PREDICTED: uncharacterized protein At1g32220, chloroplastic-like isoform X1 [Ni |
| JMSF039O17 | Sequence | 683 | 002260 (11) | emb|CDP14458.1| | 2e-103 | unnamed protein product [Coffea canephora] | 791 | 002260 (11) | ref|XP_009611685.1| | 2e-77 | PREDICTED: uncharacterized protein At1g32220, chloroplastic-like isoform X1 [Ni |
This contig is upended
. : . : . : . : . : . :
rJMFF046H21- CTTTTTTTTTTTTTTTTTGAT
rJMSF025P11- TGAT
rJMFF005K05- TGAT
____________________________________________________________
consensus CTTTTTTTTTTTTTTTTTGAT
. : . : . : . : . : . :
rJMFF046H21- AGTAACATACATTTTTCCACCG-TTTAAAAATGTGTCCAAATACATCTACCTGGTTTTAA
rJMSF025P11- AGTAACATACATTTTTCCACCGTTTTAGAAATGTGTCCAAATACATCTACCTGGTTTTAG
rJMFF005K05- AGTAACATACATTTTTCCACCG-TTTAGAAATGTGTCCAAATACATCTACCTGGTTTTAG
rJMSF039O17- AATACATCTACCTGGTTTTAG
____________________________________________________________
consensus AGTAACATACATTTTTCCACCG-TTTAGAAATGTGTCCAAATACATCTACCTGGTTTTAG
. : . : . : . : . : . :
rJMFF046H21- AGTGCTGCGATATGCACTGCACTCCCATCTCACTGCCTCACCACCTTTACATGTTTTTCC
rJMSF025P11- AGTGCTGCGATATGCACTGCACTCCCATCTCACTGCCTCACCACCTTTACATGTTTTTCC
rJMFF005K05- AGTGCTGCGATATGCACTGCACTCCCATCTCACTGCCTCACCACCTTTACATGTTTTTCC
rJMSF039O17- AGTGCTGCGATATGCACTGCACTCCCATCTCACTGCCTCACCACCTTTACATGTTTTTCC
____________________________________________________________
consensus AGTGCTGCGATATGCACTGCACTCCCATCTCACTGCCTCACCACCTTTACATGTTTTTCC
. : . : . : . : . : . :
rJMFF046H21- TAAACAAAAGAATGAGACCACTTATTGCCAAGTTAGATGTATTTATTTGTGTGTGAATGA
rJMSF025P11- TAAACAAAAGAATGAGACCACTTATTGCCAAGTTAGATGTATTTATTTGTGTGTGAATGA
rJMFF005K05- TAAACAAAAGAATGAGACCACTTATTGCCAAGTTAGATGTATTTATTTGTGTGTGAATGA
rJMSF039O17- TAAACAAAAGAATGAGACCACTTATTGCCAAGTTAGATGTATTTATTTGTGTGTGAATGA
____________________________________________________________
consensus TAAACAAAAGAATGAGACCACTTATTGCCAAGTTAGATGTATTTATTTGTGTGTGAATGA
. : . : . : . : . : . :
rJMFF046H21- CCTTTTCCATAAAAATCCAACTTCTTATTGAATTTACAAATGCTACACTGAAAATGAAAA
rJMSF025P11- CCTTTTCCATAGAAATCCAACTTCTTATTGAATTTACAAATGCTACACTGAAAATGAAAA
rJMFF005K05- CCTTTTCCATAGAAATCCAACTTCTTATTGAATTTACAAATGCTACACTGAAAATGAAAA
rJMSF039O17- CCTTTTCCATAGAAATCCAACTTCTTATTGAATTTACAAATGCTACACTGAAAATGAAAA
rJMSF012K06- AACTTCTTATTGAATTTACAAATGCTACACTGAAAATGAAAA
____________________________________________________________
consensus CCTTTTCCATAGAAATCCAACTTCTTATTGAATTTACAAATGCTACACTGAAAATGAAAA
. : . : . : . : . : . :
rJMFF046H21- GGCAAAAGAGGG-AAAAAAAGAAAGAGAATGGCTGTTGGCGCGGGAACTACTTGGCAAAA
rJMSF025P11- GGCAAAAGAGGGAAAAAAAAGAAAGAGAATGGCTGTTGGCGCGGGAACTACTTGGCAAAA
rJMFF005K05- GGCAAAAGAGGG-AAAAAAAGAAAGAGAATGGCTGTTGGCGCGGGAACTACTTGGCAAAA
rJMSF039O17- GGCAAAAGAGGG-AAAAAAAGAAAGAGAATGGCTGTTGGCGCGGGAACTACTTGGCAAAA
rJMSF012K06- GGCAAAAGAGGG-AAAAAAAGAAAGAGAATGGCTGTTGGCGCGGGAACTACTTGGCAAAA
____________________________________________________________
consensus GGCAAAAGAGGG-AAAAAAAGAAAGAGAATGGCTGTTGGCGCGGGAACTACTTGGCAAAA
. : . : . : . : . : . :
rJMFF046H21- AGCTCATCTATACAGACTTCTGTTGACTGTAGCGTAATATCCCATGGACATCGACGATTC
rJMSF025P11- AGCTCATCTATACAGACTTCTGTTGACTGTAGCGTAATATCCCATGGACATCGACGATTC
rJMFF005K05- AGCTCATCTATACAGACTTCTGTTGACTGTAGCGTAATATCCCATGGACATCGACGATTC
rJMSF039O17- AGCTCATCTATACAGACTTCTGTTGACTGTAGCGTAATATCCCATGGACATCGACGATTC
rJMSF012K06- AGCTCATCTATACAGACTTCTGTTGACTGTAGCGTAATATCCCATGGACATCGACGATTC
____________________________________________________________
consensus AGCTCATCTATACAGACTTCTGTTGACTGTAGCGTAATATCCCATGGACATCGACGATTC
. : . : . : . : . : . :
rJMFF046H21- CAGGAGGGAAAACCGGATCAGT
rJMSF025P11- CAGGAGGGAAAACCGGATCAGTAGCCGCTCTGACAGCTACTTTTGCCACTGAAGTAACAC
rJMFF005K05- CAGGAGGGAAAACCGGATCAGTAGCCGCTCTGACAGCTACTTTTGCCACTGAAGTAACAC
rJMSF039O17- CAGGAGGGAAAACCGGATCAGTAGCCGCTCTGACAGCTACTTTTGCCACTGAAGTAACAC
rJMSF012K06- CAGGAGGGAAAACCGGATCAGTAGCCGCTCTGACAGCTACTTTTGCCACTGAAGTAACAC
____________________________________________________________
consensus CAGGAGGGAAAACCGGATCAGTAGCCGCTCTGACAGCTACTTTTGCCACTGAAGTAACAC
. : . : . : . : . : . :
rJMSF025P11- TAACGGGAGGGGTGAGCAAGGGCCCAACAACAGGAAGCTGGCCCAATGGTTTCGCATGTT
rJMFF005K05- TAACGGGAGGGGTGAGCAAGGGCCCAACAACAGGAAGCTGGCCCAATGGTTTCGCATGTT
rJMSF039O17- TAACGGGAGGGGTGAGCAAGGGCCCAACAACAGGAAGCTGGCCCAATGGTTTCGCATGTT
rJMSF012K06- TAACGGGAGGGGTGAGCAAGGGCCCAACAACAGGAAGCTGGCCCAATGGTTTCGCATGTT
____________________________________________________________
consensus TAACGGGAGGGGTGAGCAAGGGCCCAACAACAGGAAGCTGGCCCAATGGTTTCGCATGTT
. : . : . : . : . : . :
rJMSF025P11- GGAGAATCATCTCAAGAGGAGAACCAACAAGACCTAGAGGCAATTTCATGCTCCCAACAC
rJMFF005K05- GGAGAATCATCTCAAGAGGAGAACCAACAAGACCTAGAGGCAATTTCATGCTCCCAACAC
rJMSF039O17- GGAGAATCATCTCAAGAGGAGAACCAACAAGACCTAGAGGCAATTTCATGCTCCCAACAC
rJMSF012K06- GGAGAATCATCTCAAGAGGAGAACCAACAAGACCTAGAGGCAATTTCATGCTCCCAACAC
____________________________________________________________
consensus GGAGAATCATCTCAAGAGGAGAACCAACAAGACCTAGAGGCAATTTCATGCTCCCAACAC
. : . : . : . : . : . :
rJMSF025P11- GACGGGTTCCATGGATGAATCCAGGTCTCAGAATCACACCTCCATAGGTATATCGGGTCA
rJMFF005K05- GACGGGTTCCATGGATGAATCCAGGTCTCAGAATCACACCTCCATAGGTATATCGGGTCA
rJMSF039O17- GACGGGTTCCATGGATGAATCCAGGTCTCAGAATCACACCTCCATAGGTATATCGGGTCA
rJMSF012K06- GACGGGTTCCATGGATGAATCCAGGTCTCAGAATCACACCTCCATAGGTATATCGGGTCA
JMFN010I10+ TCGGGTCA
JMSF039O17+ GACGGGTTCCATGGATGAATCCAGGTCTCAGAATCACACCTCCATAGGTATATCGGGTCA
JMSF025P11+ GATGAATCCAGGTCTCAGAATCACACCTCCATAGGTATATCGGGTCA
____________________________________________________________
consensus GACGGGTTCCATGGATGAATCCAGGTCTCAGAATCACACCTCCATAGGTATATCGGGTCA
. : . : . : . : . : . :
rJMSF025P11- ATAGTTCTGTTTCAGCAGCTCTCTTTCCATCATAATAACATTGTAGTAGGTAATTGACAA
rJMFF005K05- ATAGTTCTGTTTCAGCAGCTCTCTTTCCATCATAATAACCTTGTAGTAGGTAATTGACAA
rJMSF039O17- ATAGTTCTGTTTCAGCAGCTCTCTTTCCATCATAATAACCTTGTAGTAGGTAATTGACAA
rJMSF012K06- ATAGTTCTGTTTCAGCAGCTCTCTTTCCATCATAATAACCTTGTAGTAGGTAATTGACAA
JMFN010I10+ ATAGTTCTGTTTCAGCAGCTCTCTTTCCATCATAATAACCTTGTAGTAGGTAATTGACAA
JMSF039O17+ ATAGTTCTGTTTCAGCAGCTCTCTTTCCATCATAATAACCTTGTAGTAGGTAATTGACAA
JMSF025P11+ ATAGTTCTGTTTCAGCAGCTCTCTTTCCATCATAATAACATTGTAGTAGGTAATTGACAA
____________________________________________________________
consensus ATAGTTCTGTTTCAGCAGCTCTCTTTCCATCATAATAACCTTGTAGTAGGTAATTGACAA
. : . : . : . : . : . :
rJMSF025P11- AGCCAAAATCAGCAGCCGAAATGTAAACAAATCTTTTTACTCCTTCTTC
rJMFF005K05- AGCCAAAATCAGCAGCCGAAATGTAAACAAATCTTTTTACTCCTTCTTCAGCAGCAGCTC
rJMSF039O17- AGCCAAAATCAGCAGCCGAAATGTAAACAAATCTTTTTACTCCTTCTTCAGCAGCAGCTC
rJMSF012K06- AGCCAAAATCAGCAGCCGAAATGTAAACAAATCTTTTTACTCCTTCTTCAGCAGCAGCTC
JMSF012K06+ CCTTCTTCAGCAGCAGCTC
JMFN010I10+ AGCCAAAATCAGCAGCCGAAATGTAAACAAATCTTTTTACTCCTTCTTCAGCAGCAGCTC
JMSF039O17+ AGCCAAAATCAGCAGCCGAAATGTAAACAAATCTTTTTACTCCTTCTTCAGCAGCAGCTC
JMFF046H21+ TTCAGCAGCAGCTC
JMFF005K05+ CTTCTTCAGCAGCAGCTC
JMSF025P11+ AGCCAAAATCAGCAGCCGAAATGTAAACAAATCTTTTTACTCCTTCTTCAGCAGCAGCTC
____________________________________________________________
consensus AGCCAAAATCAGCAGCCGAAATGTAAACAAATCTTTTTACTCCTTCTTCAGCAGCAGCTC
. : . : . : . : . : . :
rJMFF005K05- TTATAGCATTTATGTTGGCTGTTCCATTGATCTTATACATGTATGA
rJMSF039O17- TTATAGCATTTATGTTGGCTGTTCCATTGATCTTATACATGTATGAGTTAGAGCCAAAGC
rJMSF012K06- TTATAGCATTTATGTTGGCTGTTCCATTGATCTTATACATGTATGAGTTAGAGCCAAAGC
JMSF012K06+ TTATAGCATTTATGTTGGCTGTTCCATTGATCTTATACATGTATGAGTTAGAGCCAAAGC
JMFN010I10+ TTATAGCATTTATGTTGGCTGTTCCATTGATCTTATACATGTATGAGTTAGAGCCAAAGC
JMSF039O17+ TTATAGCATTTATGTTGGCTGTTCCATTGATCTTATACATGTATGAGTTAGAGCCAAAGC
JMFF046H21+ TANTAGCATTTATGTTGGCTGTTCCATNGATCTTATACATGTATGAGTTAGAGCCAAAGC
JMFF005K05+ TTATAGCATTTATGTTGGCTGTTCCATTGATCTTATACATGTATGAGTTAGAGCCAAAGC
JMSF025P11+ TTATAGCATTTATGTTGGCTGTTCCATTGATCTTATACATGTATGAGTTAGAGCCAAAGC
____________________________________________________________
consensus TTATAGCATTTATGTTGGCTGTTCCATTGATCTTATACATGTATGAGTTAGAGCCAAAGC
. : . : . : . : . : . :
rJMSF039O17- CGCCTACACAAGATATAACAGAAGCTACTCCTTTAAGTGCTTCCTTCCAGG
rJMSF012K06- CGCCTACACAAGATATAACAGAAGCTACTCCTTTAAGTGCTTCCTTCCAGGAATCATTAG
JMSF012K06+ CGCCTACACAAGATATAACAGAAGCTACTCCTTTAAGTGCTTCCTTCCAGGAATCATTAG
JMFN010I10+ CGCCTACACAAGATATAACAGAAGCTACTCCTTTAAGTGCTTCCTTCCAGGAATCATTAG
JMSF039O17+ CGCCTACACAAGATATAACAGAAGCTACTCCTTTAAGTGCTTCCTTCCAGGAATCATTAG
JMFF046H21+ CGCCTACACAAGATATAACAGAAGCTACTCCTTTAAGTGCTTCCTTCCAGGAATCATTAG
JMFF005K05+ CGCCTACACAAGATATAACAGAAGCTACTCCTTTAAGTGCTTCCTTCCAGGAATCATTAG
JMSF025P11+ CGCCTACACAAGATATAACAGAAGCTACTCCTTTAAGTGCTTCCTTCCAGGAATCATTAG
____________________________________________________________
consensus CGCCTACACAAGATATAACAGAAGCTACTCCTTTAAGTGCTTCCTTCCAGGAATCATTAG
. : . : . : . : . : . :
rJMSF012K06- AGAGAAGGTTTCCTTGGTGCCAAGATACATTGTTTGCCCAAGGCTCTGATATGGATGACC
JMSF012K06+ AGAGAAGGTTTCCTTGGTGCCAAGATACATTGTTTGCCCAAGGCTCTGATATGGATGACC
JMFN010I10+ AGAGAAGGTTTCCTTGGTGCCAAGATACATTGTTTGCCCAAGGCTCTGATATGGATGACC
JMSF039O17+ AGAGAAGGTTTCCTTGGTGCCAAGATACATTGTTTGCCCAAGGCTCTGATATGGATGACC
JMFF046H21+ AGAGAAGGTTTCCTTGGTGCCAAGATACATTGTTTGCCCAAGGCTCTGATATGGATGACC
JMFF005K05+ AGAGAAGGTTTCCTTGGTGCCAAGATACATTGTTTGCCCAAGGCTCTGATATGGATGACC
JMSF025P11+ AGAGAAGGTTTCCTTGGTGCCAAGATACATTGTTTGCCCAAGGCTCTGATATGGATGACC
____________________________________________________________
consensus AGAGAAGGTTTCCTTGGTGCCAAGATACATTGTTTGCCCAAGGCTCTGATATGGATGACC
. : . : . : . : . : . :
rJMSF012K06- TGCCTGTTCTGCTAATACTGGCAA
JMSF012K06+ TGCCTGTTCTGCTAATACTGGCAACTTCCAGGCCACGATTCAAAGCTTCTTTGCAAATAT
JMFN010I10+ TGCCTGTTCTGCTAATACTGGCAACTTCCAGGCCACGATTCAAAGCTTCTTTGCAAATAT
JMSF039O17+ TGCCTGTTCTGCTAATACTGGCAACTTCCAGGCCACGATTCAAAGCTTCTTTGCAAATAT
JMFF046H21+ TGCCTGTTCTGCTAATACTGGCAACTTCCAGGCCACGATTCAAAGCTTCTTTGCAAATAT
JMFF005K05+ TGCCTGTTCTGCTAATACTGGCAACTTCCAGGCCACGATTCAAAGCTTCTTTGCAAATAT
JMSF025P11+ TGCCTGTTCTGCTAATACTGGCAACTTCCAGGCCACGATTCAAAGCTTCTTTGCAAATAT
____________________________________________________________
consensus TGCCTGTTCTGCTAATACTGGCAACTTCCAGGCCACGATTCAAAGCTTCTTTGCAAATAT
. : . : . : . : . : . :
JMSF012K06+ GTGAGCCAACAAATCCATTTCCACCTAGCACCAGTATCTTGTCTGTAGGAGGCAAATTTA
JMFN010I10+ GTGAGCCAACAAATCCATTTCCACCTAGCACCAGTATCTTGTCTGTAGGAGGCAAATTTA
JMSF039O17+ GTGAGCCAACAAATCCATTTCCACCTAGCACCAGTATCTTGTCTGTAGGAGGCAAATTTA
JMFF046H21+ GTGAGCCAACAAATCCATTTCCACCTAGCACCAGTATCTTGTCTGTAGGAGGCAAATTTA
JMFF005K05+ GTGAGCCAACAAATCCATTTCCACCTAGCACCAGTATCTTGTCTGTAGGAGGCAAATTTA
JMSF025P11+ GTGAGCCAACAAATCCATTTCCACCTAGCACCAGTATCTTGTCTGTAGGAGGCAAATTTA
____________________________________________________________
consensus GTGAGCCAACAAATCCATTTCCACCTAGCACCAGTATCTTGTCTGTAGGAGGCAAATTTA
. : . : . : . : . : . :
JMSF012K06+ CTGTTTCGGCTTCCTCAACTTTAAAAGGTTCATCTGTTTTGTTAGACTCACTTGAAAAAA
JMFN010I10+ CTGTTTCGGCTTCCTCAACTTTAAAAGGTTCATCTGTTTTGTTAGACTCACTTGAAAAAA
JMSF039O17+ CTGTTTCGGCTTCCTCAACTTTAAAAGGTTCATCTGTTTTGTTAGACTCACTTGAAAAAA
JMFF046H21+ CTGTTTCGGCTTCCTCAACTTTAAAAGGTTCATCTGTTTTGTTAGACTCACTTGAAAAAA
JMFF005K05+ CTGTTTCGGCTTCCTCAACTTTAAAAGGTTCATCTGTTTTGTTAGACTCACTTGAAAAAA
JMSF025P11+ CTGTTTCGGCTTCCTCAACTTTAAAAGGTTCATCTGTTTTGTTAGACTCACTTGAAAAAA
____________________________________________________________
consensus CTGTTTCGGCTTCCTCAACTTTAAAAGGTTCATCTGTTTTGTTAGACTCACTTGAAAAAA
. : . : . : . : . : . :
JMSF012K06+ AGCGAGAATTTTTGGATGCAGAAATATACGAGAATCTGGAGAGGTAAAGTTTAGCGGCAG
JMFN010I10+ AGCGAGAATTTTTGGATGCAGAAATATACGAGAATCTGGAGAGGTAAAGTTTAGCGGCAG
JMSF039O17+ AGCGAGAATTTTTGGATGCAGAAATATACGAGAATCTGGAGAGGTAAAGTTTAGCGGCAG
JMFF046H21+ AGCGAGAATTTTTGGATGCAGAAATATACGAGAATCTGGAGAGGTAAAGTTTAGCGGCAG
JMFF005K05+ AGCGAGAATTTTTGGATGCAGAAATATACGAGAATCTGGAGAGGTAAAGTTTAGCGGCAG
JMSF025P11+ AGCGAGAATTTTTGGATGCAGAAATATACGAGAATCTGGAGAGGTAAAGTTTAGCGGCAG
____________________________________________________________
consensus AGCGAGAATTTTTGGATGCAGAAATATACGAGAATCTGGAGAGGTAAAGTTTAGCGGCAG
. : . : . : . : . : . :
JMSF012K06+ AAGAATGGATCAAGCGTGACGTCATCGTCGATCGTCTCCTTTGTAATTGTGCGTTTGCGT
JMFN010I10+ AAGAATGGATCAAGCGTGACGTCATCGTCGATCGTCTCCTTTGTAATTGTGCGTTTGCGT
JMSF039O17+ AAGAATGGATCAAGCGTGACGTCATCGTCGATCGTCTCCTTTGTAATTGTGCGTTTGCGT
JMFF046H21+ AAGAATGGATCAAGCGTGACGTCATCGTCGATCGTCTCCTTTGTAATTGTGCGTTTGCGT
JMFF005K05+ AAGAATGGATCAAGCGTGACGTCATCGTCGATCGTCTCCTTTGTAATTGTGCGTTTGCGT
JMSF025P11+ AAGAATGGATCAAGCGTGACGTCATCGTCGATCGTCTCCTTTGTAATTGTGCGTTTGCGT
____________________________________________________________
consensus AAGAATGGATCAAGCGTGACGTCATCGTCGATCGTCTCCTTTGTAATTGTGCGTTTGCGT
. : . : . : . : . : . :
JMSF012K06+ ACAGAAGCC
JMFN010I10+ ACAGAAGCCTCGCTTT
JMSF039O17+ ACAGAAGCCTCGCTTTTCCGCT
JMFF046H21+ ACAGAAGCCTCGCTTTTCCGCTGCTAATCCGCGAAAGATTCGATGCAGTTTAAGAC
JMFF005K05+ ACAGAAGCCTCGCTTTTCCGCT
JMSF025P11+ ACAGAAGCCTCGCTTTTCCGCTGCTAATCCGCGAAAGATTCGATGCAGTTTAAGACACTC
____________________________________________________________
consensus ACAGAAGCCTCGCTTTTCCGCTGCTAATCCGCGAAAGATTCGATGCAGTTTAAGACACTC