Contig 002236:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF023I05Sequence622002236 (2)ref|XP_004302765.1|187PREDICTED: uncharacterized protein LOC101301506 [Fragaria vesca subsp. vesca]764002236 (2)ref|XP_006339287.1|199PREDICTED: uncharacterized protein LOC102600296 [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF023I05-                                                GATGACATGTGCATAAAACCAC
                      ____________________________________________________________
consensus                                                   GATGACATGTGCATAAAACCAC
 
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rJMSF023I05-          CTGGACATGTAACATTGTTTGTATCAAATAACACCTTTATTGAAAGTTCATAGCATTGGC
                      ____________________________________________________________
consensus             CTGGACATGTAACATTGTTTGTATCAAATAACACCTTTATTGAAAGTTCATAGCATTGGC
 
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rJMSF023I05-          TTCAAGTTGTACAGAACACCTGCTAAAGTGCAGTTTCAGCTGCCCATGACAACAACCCAA
                      ____________________________________________________________
consensus             TTCAAGTTGTACAGAACACCTGCTAAAGTGCAGTTTCAGCTGCCCATGACAACAACCCAA
 
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rJMSF023I05-          TACTCTGCTTACCATTCAATTAGAAATTATGGAAAATGCCATTTGAACAAAAAGGCGCTT
                      ____________________________________________________________
consensus             TACTCTGCTTACCATTCAATTAGAAATTATGGAAAATGCCATTTGAACAAAAAGGCGCTT
 
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rJMSF023I05-          CACCATGCAGCTGAGGGGAAAAGAGCAACCTCAATGTGAGCTTAGAGCAAGAACGCTTGC
                      ____________________________________________________________
consensus             CACCATGCAGCTGAGGGGAAAAGAGCAACCTCAATGTGAGCTTAGAGCAAGAACGCTTGC
 
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rJMSF023I05-          TGAGCACTTGGCAAACTTCTCAACTAGAACCTGATTTAAAATTTGAAGATCCGGCATTGA
                      ____________________________________________________________
consensus             TGAGCACTTGGCAAACTTCTCAACTAGAACCTGATTTAAAATTTGAAGATCCGGCATTGA
 
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rJMSF023I05-          TATTCCTCCTAAGAATCCGAGCCTCAGAATTAGACTCTGCCGACTCTATCAACTCCTTCA
                      ____________________________________________________________
consensus             TATTCCTCCTAAGAATCCGAGCCTCAGAATTAGACTCTGCCGACTCTATCAACTCCTTCA
 
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rJMSF023I05-          AGCCCATATTCCCGACCTTCTCCACCTCCTTCTCTTCACTCTGCTTCTTCTTCATTGCCG
JMSF023I05+                                                 CTCTGCTTCTTCTTCATTGCCG
                      ____________________________________________________________
consensus             AGCCCATATTCCCGACCTTCTCCACCTCCTTCTCTTCACTCTGCTTCTTCTTCATTGCCG
 
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rJMSF023I05-          GCTTAGCAGTGAGTCTCTCAAAATAATTCCCATATATGTACTCAGGATTGTACCCGTTTT
JMSF023I05+           GCTTAGCAGTGAGTCTCTCAAAATAATTCCCATATATGTACTCAGGATTGTACCCGTTTT
                      ____________________________________________________________
consensus             GCTTAGCAGTGAGTCTCTCAAAATAATTCCCATATATGTACTCAGGATTGTACCCGTTTT
 
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rJMSF023I05-          CATCGTCAAACAGAATGATATGGCCGTGCCACTCCCAGACCCGATAATCCGAGTCCTCGT
JMSF023I05+           CATCGTCAAACAGAATGATATGGCCGTGCCACTCCCAGACCCGATAATCCGAGTCCTCGT
                      ____________________________________________________________
consensus             CATCGTCAAACAGAATGATATGGCCGTGCCACTCCCAGACCCGATAATCCGAGTCCTCGT
 
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rJMSF023I05-          CCTCGTGAAACCCTACGCATATGTGATGCTCGCCGATTGTGACGGCCTGGCCGGAATTGG
JMSF023I05+           CCTCGTGAAACCCTACGCATATGTGATGCTCGCCGATTGTGACGGCCTGGCCGGAATTGG
                      ____________________________________________________________
consensus             CCTCGTGAAACCCTACGCATATGTGATGCTCGCCGATTGTGACGGCCTGGCCGGAATTGG
 
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rJMSF023I05-          GCTTGAGAGAGTCGGTGTTGCCGCTGTGGATTGTGCGGATGATCTCCTTCTCGAGCTTGG
JMSF023I05+           GCTTGAGAGAGTCGGTGTTGCCGCTGTGGATTGTGCGGATGATCTCCTTCTCGAGCTTGG
                      ____________________________________________________________
consensus             GCTTGAGAGAGTCGGTGTTGCCGCTGTGGATTGTGCGGATGATCTCCTTCTCGAGCTTGG
 
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rJMSF023I05-          ATTCTTCTTTGGCGAGCTGGGATTTGTAGGAGGGTTCGACGTCGTCGTCGTCGTCATCAT
JMSF023I05+           ATTCTTCTTTGGCGAGCTGGGATTTGTAGGAGGGTTCGACGTCGTCGTCGTCGTCATCAT
                      ____________________________________________________________
consensus             ATTCTTCTTTGGCGAGCTGGGATTTGTAGGAGGGTTCGACGTCGTCGTCGTCGTCATCAT
 
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rJMSF023I05-          CCGGGTCGTCTGTTTGGTCGGA                                      
JMSF023I05+           CCGGGTCGTCTGTTTGGTCGGAGAGGAGGTTGTTGAGGAGGAGGTCTTCGAGGGATTTGG
                      ____________________________________________________________
consensus             CCGGGTCGTCTGTTTGGTCGGAGAGGAGGTTGTTGAGGAGGAGGTCTTCGAGGGATTTGG
 
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JMSF023I05+           CGGAGAGCAAAGCAGGGTTTGGAGGCGGTGAAGGGCGGATTTGGAGTCTGCCCATTAGGG
                      ____________________________________________________________
consensus             CGGAGAGCAAAGCAGGGTTTGGAGGCGGTGAAGGGCGGATTTGGAGTCTGCCCATTAGGG
 
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JMSF023I05+           ATTGGAGGAGGAGGTTGTCGAAATTAGGAGTGGTGTTGAACGATGAATTCATGGTGGCGG
                      ____________________________________________________________
consensus             ATTGGAGGAGGAGGTTGTCGAAATTAGGAGTGGTGTTGAACGATGAATTCATGGTGGCGG
 
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JMSF023I05+           TCGGCGGTCGGCGGTCGGCGGTCGGCGGTCGGCCACAGCGATGGTGGGATTGCAGGGGTT
                      ____________________________________________________________
consensus             TCGGCGGTCGGCGGTCGGCGGTCGGCGGTCGGCCACAGCGATGGTGGGATTGCAGGGGTT
 
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JMSF023I05+           TAGGAGGTTTGGGGTTTTGGGGCTTCCAGAATAAAAAGAGGAAATTGGGACTTGAGACTC
                      ____________________________________________________________
consensus             TAGGAGGTTTGGGGTTTTGGGGCTTCCAGAATAAAAAGAGGAAATTGGGACTTGAGACTC