clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF001N01 | Sequence | 402 | 002231 (3) | ref|XP_010031110.1| | 2e-32 | PREDICTED: uncharacterized protein LOC104421001 isoform X2 [Eucalyptus grandis] | 730 | 014938 | gb|KDP21671.1| | 1e-59 | hypothetical protein JCGZ_03342 [Jatropha curcas] |
JMSF023D09 | Sequence | 684 | 002231 (3) | ref|XP_009758903.1| | 5e-75 | PREDICTED: uncharacterized protein LOC104211531 isoform X5 [Nicotiana sylvestri | 722 | 005776 (2) | ref|XP_009771590.1| | 298 | PREDICTED: uncharacterized protein LOC104222105 [Nicotiana sylvestris] |
JMSF039F09 | Sequence | 641 | 002231 (3) | ref|XP_009758902.1| | 4e-67 | PREDICTED: uncharacterized protein LOC104211531 isoform X4 [Nicotiana sylvestri | 845 | 005776 (2) | ref|XP_009771590.1| | 357 | PREDICTED: uncharacterized protein LOC104222105 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMSF023D09+ TGACTCACTATCCATCACATCAAT
____________________________________________________________
consensus TGACTCACTATCCATCACATCAAT
. : . : . : . : . : . :
JMSF039F09+ CCAAGTCGAGGAGATTGTGAGAAGATTAAGCAGCGCAACCCAAAGGAAAAA
JMSF023D09+ TACTCTAGCCCAAGTCGAGGAGATTGTGAGAAGATTAAGCAGCGCAACCCAAAGGAAAAA
____________________________________________________________
consensus TACTCTAGCCCAAGTCGAGGAGATTGTGAGAAGATTAAGCAGCGCAACCCAAAGGAAAAA
. : . : . : . : . : . :
JMSF039F09+ GCCAATTCTCACAGAGATGTAAAACCATCCATGGTTGCCCCACCCAGCCAAAGATGAAGG
JMSF023D09+ GCCAATTCTCACAGAGATGTAAAACCATCCATGGTTGCCCCACCCAGCCAAAGATGAAGG
____________________________________________________________
consensus GCCAATTCTCACAGAGATGTAAAACCATCCATGGTTGCCCCACCCAGCCAAAGATGAAGG
. : . : . : . : . : . :
JMSF039F09+ AATAGTTTGGTCAACATTGACCTTCAACTCCTCTTTTACATTGGACATGGAGAGAAATCC
JMSF023D09+ AATAGTTTGGTCAAAATTGACCTTCAACTCCTCTTTTACATTGGACATGGAGAGAAATCC
____________________________________________________________
consensus AATAGTTTGGTCAACATTGACCTTCAACTCCTCTTTTACATTGGACATGGAGAGAAATCC
. : . : . : . : . : . :
JMSF039F09+ CTTGAGATGAAAAATTGAGCTTCCCGGTGTAGAAGAAACCCACAAGGTAAAAAATACAAA
JMSF023D09+ CTTGAGATGAAAAATTGAGCTTCCCGGTGTAGAAGAAACCCACAAGGTAAAAAATACAAA
____________________________________________________________
consensus CTTGAGATGAAAAATTGAGCTTCCCGGTGTAGAAGAAACCCACAAGGTAAAAAATACAAA
. : . : . : . : . : . :
JMSF039F09+ AAGAGAAATCGCAAAGAACCTGTGTATCAAGGCCAGAGCCTTGGCTTTGGAAAGATTAGG
JMSF001N01+ TCGCAAAGAACCTGTGTATCAAGGCCAGAGCCTTGGCTTTGGAAAGATTAGG
JMSF023D09+ AAGAGAAATCGCAAAGAACCTGTGTATCAAGGCCAGAGCCTTGGCTTTGGAAAGATTAGG
____________________________________________________________
consensus AAGAGAAATCGCAAAGAACCTGTGTATCAAGGCCAGAGCCTTGGCTTTGGAAAGATTAGG
. : . : . : . : . : . :
JMSF039F09+ CAATGTGAAAATCAGTGTGGAAAGCGGGGCAGCAACCAATGTAAGAACTAACGATCCCAC
JMSF001N01+ CAATGTGAAAATCAGTGTGGAAAGCGGGGCAGCAACCAATGTAAGAACTAACGATCCCAC
JMSF023D09+ CAATGTGAAAATCAGTGTGGAAAGCGGGGCAGCAACCAATGTAAGAACTAACGATCCCAC
____________________________________________________________
consensus CAATGTGAAAATCAGTGTGGAAAGCGGGGCAGCAACCAATGTAAGAACTAACGATCCCAC
. : . : . : . : . : . :
JMSF039F09+ AAATAAACCTGGTAAATTCCCTAACCCTAACGACATTGCGCCATCATCTCGTAAAGGAAG
JMSF001N01+ AAATAAACCTGGTAAATTCCCTAACCCTAACGACATTGCGCCATCATCTCGTAAAGGAAG
JMSF023D09+ AAATAAACCTGGTAAATTCCCTAACCCTAACGACATTGCGCCATCATCTCGTAAAGGAAG
____________________________________________________________
consensus AAATAAACCTGGTAAATTCCCTAACCCTAACGACATTGCGCCATCATCTCGTAAAGGAAG
. : . : . : . : . : . :
JMSF039F09+ AACTACAAAATACGCACTTAGAATGAAGAAGAAAGTGGAGGCGGAAGATAGCAAAGCCGA
JMSF001N01+ AACTACAAAATACGCACTTAGAATGAAGAAGAAAGTGGAGGCGGAAGATAGCAAAGCCGA
JMSF023D09+ AACTACAAAATACGCACTTAGAATGAAGAAGAAAGTGGAGGCGGAAGATAGCAAAGCCGA
____________________________________________________________
consensus AACTACAAAATACGCACTTAGAATGAAGAAGAAAGTGGAGGCGGAAGATAGCAAAGCCGA
. : . : . : . : . : . :
JMSF039F09+ GGTTTCGTGAGGGTGAACAGTGACGAACCACGACAAGATTGCGTGTGATCGAGGAGTTTT
JMSF001N01+ GGTTTCGTGAGGGTGAACAGTGACGAACCACGACAAGATTGCGTGTGATCGAGGAGTTTT
JMSF023D09+ GGTTTCGTGAGGGTGAACAGTGACGAACCACGACAAGATTGCGTGTGATCGAGGAGTTTT
____________________________________________________________
consensus GGTTTCGTGAGGGTGAACAGTGACGAACCACGACAAGATTGCGTGTGATCGAGGAGTTTT
. : . : . : . : . : . :
JMSF039F09+ AGCCTCCATATTCATCGCCTTCCCCTTGTACCTCTCACTGGAATTCTTACGCCCTAAAGA
JMSF001N01+ AGCCTCCATATTCATCGCCTTCCCCTTGTACCTCTCACTGGAATTCTTACGCCCTAAAGA
JMSF023D09+ AGCCTCCATATTCATCGCCTTCCCCTTGTACCTCTCACTGGAATTCTTACGCCCTAAAGA
____________________________________________________________
consensus AGCCTCCATATTCATCGCCTTCCCCTTGTACCTCTCACTGGAATTCTTACGCCCTAAAGA
. : . : . : . : . : . :
JMSF039F09+ ATTTAGTGTGTTGTTTTCTCTTTCTCTACCAAAACTTCCATGGATC
JMSF001N01+ ATTTAGTGTGTTGTTTTCTCTTTCTCTACCAAAACTTCCATGGATC
JMSF023D09+ ATTTAGTGTGTTGTTTTCTCTTTCTCTACCAAAACTTCCATGGATCCTCATCAGAAAACC
____________________________________________________________
consensus ATTTAGTGTGTTGTTTTCTCTTTCTCTACCAAAACTTCCATGGATCCTCATCAGAAAACC