Contig 002220:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012I24Sequence512002220 (3)ref|XP_009587779.1|1e-45PREDICTED: protease Do-like 2, chloroplastic isoform X3 [Nicotiana tomentosifor737012258 (3)ref|XP_009631856.1|3e-32PREDICTED: protease Do-like 2, chloroplastic isoform X1 [Nicotiana tomentosifor
JMSF022D10Sequence651002220 (3)ref|XP_009587779.1|2e-53PREDICTED: protease Do-like 2, chloroplastic isoform X3 [Nicotiana tomentosifor782012258 (3)ref|XP_009631856.1|6e-39PREDICTED: protease Do-like 2, chloroplastic isoform X1 [Nicotiana tomentosifor
JMSF029F18Sequence618002220 (3)ref|XP_009587779.1|3e-73PREDICTED: protease Do-like 2, chloroplastic isoform X3 [Nicotiana tomentosifor783012258 (3)ref|XP_009631857.1|5e-45PREDICTED: protease Do-like 2, chloroplastic isoform X2 [Nicotiana tomentosifor

Alignment

This contig is upended


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JMSF029F18+                                                     TTCACTTTGACCTGTGTA
JMSF022D10+                                                              ACCTGTGTA
                      ____________________________________________________________
consensus                                                       TTCACTTTGACCTGTGTA
 
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JMSF029F18+           TCATGCTCAACACAATGAGCATTTGTTAAAAGTTTTCCATCCCCAATCATGAAAGCACTT
JMSF022D10+           TCATGCTCAACACAATGAGCATTTGTTAAAAGTTTTCCATCCCCAATCATGAAAGCACTT
                      ____________________________________________________________
consensus             TCATGCTCAACACAATGAGCATTTGTTAAAAGTTTTCCATCCCCAATCATGAAAGCACTT
 
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JMFF012I24+                                       TGCCAAGGAAGAGAGTAATCGGGAGCAGTGTG
JMSF029F18+           CCTGTACTTGTAT-ATTGTCTTTGTTTCTGCCAAGGAAGAGAGTAATCGGGAGCAGTGTG
JMSF022D10+           CCTGTACTTGTATAATTGTCTTTGTTTCTGCCAAGGAAGAGAGTAATCGGGAGCAGTGTG
                      ____________________________________________________________
consensus             CCTGTACTTGTATAATTGTCTTTGTTTCTGCCAAGGAAGAGAGTAATCGGGAGCAGTGTG
 
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JMFF012I24+           TGTACAGTAGACCTTCACAACAGCATTCAGAAAATTTGCATCTTGAAGATTACCAGTTTC
JMSF029F18+           TGTACAGTAGACCTTCACAACAGCATTCAGAAAATTTGCATCTTGAAGATTACCAGTTTC
JMSF022D10+           TGTACAGTAGACCTTCACAACAGCATTCAGAAAATTTGCATCTTGAAGATTACCAGTTTC
                      ____________________________________________________________
consensus             TGTACAGTAGACCTTCACAACAGCATTCAGAAAATTTGCATCTTGAAGATTACCAGTTTC
 
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JMFF012I24+           CACCTGCAACTCCTTTGAGTCAAACTGAACTCCCTTCCCTTTTCTTTGCACGCCAAATGA
JMSF029F18+           CACCTGCAACTCCTTTGAGTCAAACTGAACTCCCTTCCCTTTTCTTTGCACGCCAAATGA
JMSF022D10+           CACCTGCAACTCCTTTGAGTCAAACTGAACTCCCTTCCCTTTTCTTTGCACGCCAAATGA
                      ____________________________________________________________
consensus             CACCTGCAACTCCTTTGAGTCAAACTGAACTCCCTTCCCTTTTCTTTGCACGCCAAATGA
 
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JMFF012I24+           TTTAAATGATGTTGATTGAGACCTCCCATTCTTATTTGTATTTCTGTCATCTACATTTGA
JMSF029F18+           TTTAAATGATGTTGATTGAGACCTCCCATTCTTATTTGTATTTCTGTCATCTACATTTGA
JMSF022D10+           TTTAAATGATGTTGATTGAGACCTCCCATTCTTATTTGTATTTCTGTCATCTACATTTGA
                      ____________________________________________________________
consensus             TTTAAATGATGTTGATTGAGACCTCCCATTCTTATTTGTATTTCTGTCATCTACATTTGA
 
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JMFF012I24+           AAAAAACCTTTCACCTTTTGATCTCCTCGTACACTTCTGCGTAACAGCTTCTCTCTCTGT
JMSF029F18+           AAAAAACCTTTCACCTTTTGATCTCCTCGTACACTTCTGCGTAACAGCTTCTCTCTCTGT
JMSF022D10+           AAAAAACCTTTCACCTTTTGATCTCCTCGTACACT------------------TCTCTGT
                      ____________________________________________________________
consensus             AAAAAACCTTTCACCTTTTGATCTCCTCGTACACTTCTGCGTAACAGCTTCTCTCTCTGT
 
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JMFF012I24+           GTGAGATACACGAGCTGGAGGTTTTTTCCTTTGGTTATGTTCCTGATTTTGACTTTGAGT
JMSF029F18+           GTGAGATACACGAGCTGGAGGTTTTTTCCTTTGGTTATGTTCCTGATTTTGACTTTGAGT
JMSF022D10+           GTGAGATACACGAGCTGGAGGTTTTTTCCTTTGGTTATGTTCCTGATTTTGACTTTGAGT
                      ____________________________________________________________
consensus             GTGAGATACACGAGCTGGAGGTTTTTTCCTTTGGTTATGTTCCTGATTTTGACTTTGAGT
 
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JMFF012I24+           TGCGGATTTAGGAACAAAGAAACGGGAGGGTGGTCGGGAAGTGGCGAAGAGTGGTTGAGA
JMSF029F18+           TGCGGATTTAGGAACAAAGAAACGGGAGGGTGGTCGGGAAGTGGCGAAGAGTGGTTGAGA
JMSF022D10+           TGCGGATTTAGGAACAAAGAAACGGGAGGGTGGTCGGGAAGTGGCGAAGAGTGGTTGAGA
                      ____________________________________________________________
consensus             TGCGGATTTAGGAACAAAGAAACGGGAGGGTGGTCGGGAAGTGGCGAAGAGTGGTTGAGA
 
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JMFF012I24+           GGATAGAGAGCAGCGGCAAGTGGCGGTGGAGGAGAGCGCCGTGAACCAGAAAGCAGCGGC
JMSF029F18+           GGATAGAGAGCAGCGGCAAGTGGCGGTGGAGGAGAGCGCCGTGAACCAGAAAGCAGCGGC
JMSF022D10+           GGATAGAGAGCAGCGGCAAGTGGCGGTGGAGGAGAGCGCCGTGAACCAGAAAGCAGCGGC
                      ____________________________________________________________
consensus             GGATAGAGAGCAGCGGCAAGTGGCGGTGGAGGAGAGCGCCGTGAACCAGAAAGCAGCGGC
 
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JMFF012I24+           TGCGACGGCCATTAAGCGGGTTTAGAGAGTGAGAGGAGTGATAGTGGTTGTAGCAGCA  
JMSF029F18+           TGCGACGGCCATTAAGCGGGTTTAGAGAGTGAGAGGAGTGATAGTGGTTGTAGCAGCA  
JMSF022D10+           TGCGACGGCCATTAAGCGGGTTTAGAGAGTGAGAGGAGTGATAGTGGTTGTAGCAGCAGC
                      ____________________________________________________________
consensus             TGCGACGGCCATTAAGCGGGTTTAGAGAGTGAGAGGAGTGATAGTGGTTGTAGCAGCAGC
 
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JMSF022D10+           AATGAGGAAGGAAATCGATTGTTTCCCCTTATCCTATGTCTTCCCGAGTTGGCGCCTCTC
                      ____________________________________________________________
consensus             AATGAGGAAGGAAATCGATTGTTTCCCCTTATCCTATGTCTTCCCGAGTTGGCGCCTCTC