Contig 002210:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007O16Sequence194002210 (3)754016019ref|XP_009775967.1|3e-44PREDICTED: pentatricopeptide repeat-containing protein At3g49740 [Nicotiana syl
JMSF021B13Sequence691002210 (3)ref|XP_007047612.1|1e-75Squalene monooxygenase isoform 3 [Theobroma cacao] gb|EOX91769.1| Squalene monoo781013961 (2)ref|XP_009624091.1|5e-104PREDICTED: squalene epoxidase 3-like [Nicotiana tomentosiformis]
JMSF029B21Sequence562002210 (3)ref|XP_007047613.1|4e-47Squalene monooxygenase isoform 4 [Theobroma cacao] gb|EOX91770.1| Squalene monoo650013961 (2)emb|CAN60406.1|1e-80hypothetical protein VITISV_034139 [Vitis vinifera]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF021B13+                                       AAGCAACGATGTTACACTACCTTGCTCCAATT
                      ____________________________________________________________
consensus                                         AAGCAACGATGTTACACTACCTTGCTCCAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF021B13+           GAACATTGGGAAGGGAGGCGGCTTTTTCTCTCATCCTCTGTATGAACCGCCCGTTATGAA
                      ____________________________________________________________
consensus             GAACATTGGGAAGGGAGGCGGCTTTTTCTCTCATCCTCTGTATGAACCGCCCGTTATGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029B21+                                          TTCTAGAGGATAAGACACTTTAGTGTTCT
JMSF021B13+           AGCTTCTGCCAGACACATCAGAACTGAAATTTTCTAGAGGATAAGACACTTTAGTGTTCT
                      ____________________________________________________________
consensus             AGCTTCTGCCAGACACATCAGAACTGAAATTTTCTAGAGGATAAGACACTTTAGTGTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029B21+           TTCCATCTTTGAAAAGTGCATAGCCAACAACACGNTGAGCATCAATTTTATCAACACAAT
JMSF021B13+           TTCCATCTTTGAAAAGTGCATAGCCAACAACACGCTGAGCATCAATTTTATCAACACAAT
                      ____________________________________________________________
consensus             TTCCATCTTTGAAAAGTGCATAGCCAACAACACGCTGAGCATCAATTTTATCAACACAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029B21+           CTTGAAGGCCAAGCTCAATTAATTTAAGATAACCACCAGGTTGGAGCAATTCCCCAACAA
JMSF021B13+           CTTGAAGGCCAAGCTCAATTAATTTAAGATAACCACCAGGTTGGAGCAATTCCCCAACAA
                      ____________________________________________________________
consensus             CTTGAAGGCCAAGCTCAATTAATTTAAGATAACCACCAGGTTGGAGCAATTCCCCAACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029B21+           TCCGGTCAGGTTCTGTTAAATCTCTTTCAATCACATGAACCNTTCGTCCATCCTTGCCAA
JMSF021B13+           TCCGGTCAGGTTCTGTTAAATCTCTTTCAATCACATGAACCCTTCGTCCATCCTTGCCAA
                      ____________________________________________________________
consensus             TCCGGTCAGGTTCTGTTAAATCTCTTTCAATCACATGAACCCTTCGTCCATCCTTGCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029B21+           GGGTGTGAGCGAGAGCAGCACCGGCGACACCAGNTCCGANGACAATGACATCGGCATCGG
JMSF021B13+           GGGTGTGAGCGAGAGCAGCACCGGCGACACCAGCTCCGACGACAATGACATCGGCATCGG
                      ____________________________________________________________
consensus             GGGTGTGAGCGAGAGCAGCACCGGCGACACCAGCTCCGACGACAATGACATCGGCATCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029B21+           ACTCCTTGCGGGTCCCACATTCGCCGTTATCCTTACAAGTTCGCGTTCNGGCGCCATTCC
JMSF021B13+           ACTCCTTGCGGGTCCCACATTCGCCGTTATCCTTACAAGTTCGCGTTCCGGCGCCATTCC
                      ____________________________________________________________
consensus             ACTCCTTGCGGGTCCCACATTCGCCGTTATCCTTACAAGTTCGCGTTCCGGCGCCATTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029B21+           GGCGGGTTTCACTGCCTTTTTTCTTGAAACTCGAGGTCCCAAGGCGCATGACATAGAAAA
JMSF007O16+                                                        GCATGACATAGAAAA
JMSF021B13+           GGCGGGTTTCACTGCCTTTTTTCTTGAAACTCGAGGTCCCAAGGCGCATGACATAGAAAA
                      ____________________________________________________________
consensus             GGCGGGTTTCACTGCCTTTTTTCTTGAAACTCGAGGTCCCAAGGCGCATGACATAGAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029B21+           GAACAAACCCTAAAAGAGAAACCATGAATGTTCCCGCAATGTAGTTATCCATGAGCGTCA
JMSF007O16+           GAACAAACCCTAAAAGAGAAACCATGAATGTTCCCGCAATGTAGTNATCCATGAGCGTCA
JMSF021B13+           GAACAAACCCTAAAAGAGAAACCATGAATGTTCCCGCAATGTAGTTATCCATGAGCGTCA
                      ____________________________________________________________
consensus             GAACAAACCCTAAAAGAGAAACCATGAATGTTCCCGCAATGTAGTTATCCATGAGCGTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029B21+           TCTCACTCGCCCTCTCCCCCTTCAGGATTGGAACTTGAGTCCCTCCGGTTAAGGCTTCTT
JMSF007O16+           TCTCACTCGCCCTCTCCCCCTTCAGGATTGGAACTTGAGTCCCTCCGGTTAAGGNTTCTT
JMSF021B13+           TCTCACTCGCCCTCTCCCCCTTCAGGATTGGAACTTGAGTCCCTCCGGTTAAGGCTTCTT
                      ____________________________________________________________
consensus             TCTCACTCGCCCTCTCCCCCTTCAGGATTGGAACTTGAGTCCCTCCGGTTAAGGCTTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029B21+           TATAATAAATGTTCAGAGCGGATCGGGGTTCCCTTTNGTCGTGAATCTT           
JMSF007O16+           TATAATAAATGTTCAGAGCGGA-CGGGGTTCCCTTTCGTCGTGAATCTT           
JMSF021B13+           TATAATAAATGTTCAGAGCGGA-CGGGGTTCCCTTTCGTCGTGAATCTTTGCGGAGGACC
                      ____________________________________________________________
consensus             TATAATAAATGTTCAGAGCGGA-CGGGGTTCCCTTTCGTCGTGAATCTTTGCGGAGGACC