Contig 002194:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019H05Sequence563002194 (9)ref|XP_009791843.1|5e-90PREDICTED: 20 kDa chaperonin, chloroplastic [Nicotiana sylvestris] ref|XP_009791701002194 (9)ref|XP_007012580.1|5e-70Chaperonin 20 isoform 1 [Theobroma cacao] ref|XP_007012582.1| Chaperonin 20 isof
JMFN033A22Sequence470002194 (9)ref|XP_009791843.1|7e-55PREDICTED: 20 kDa chaperonin, chloroplastic [Nicotiana sylvestris] ref|XP_009791
JMFN040K16Sequence624002194 (9)ref|XP_009791843.1|1e-114PREDICTED: 20 kDa chaperonin, chloroplastic [Nicotiana sylvestris] ref|XP_009791
JMFN042A18Sequence603002194 (9)ref|XP_009618950.1|6e-78PREDICTED: 20 kDa chaperonin, chloroplastic-like [Nicotiana tomentosiformis]
JMSF018M19Sequence461002194 (9)ref|XP_009791843.1|8e-51PREDICTED: 20 kDa chaperonin, chloroplastic [Nicotiana sylvestris] ref|XP_009791678002194 (9)ref|XP_009618950.1|3e-94PREDICTED: 20 kDa chaperonin, chloroplastic-like [Nicotiana tomentosiformis]
JMSF051M05Sequence584002194 (9)ref|XP_009791843.1|1e-94PREDICTED: 20 kDa chaperonin, chloroplastic [Nicotiana sylvestris] ref|XP_009791679002194 (9)ref|XP_009618950.1|6e-75PREDICTED: 20 kDa chaperonin, chloroplastic-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN042A18+ TAAACAGTAGTAAGTGTGATGAT
rJMFF019H05- GTGTGATGAT
                      ____________________________________________________________
consensus TAAACAGTAGTAAGTGTGATGAT
 
. : . : . : . : . : . :
JMFN042A18+ TCACTTATGCCATTGCTTAGTTTCCATGTAACAAAAAGAAGAGAGGAAATTCTATTACAG
rJMFF019H05- TCACTTATGCCATTGCTTAGTTTCCATGTAACAAAAAGAAGAGAGGAAATTCTATTACAG
rJMSF018M19- AAAAGAAGAGAGGAAATTCTATTACAG
rJMSF051M05- AAAAGAAGAGAGGAAATTCTATTACAG
                      ____________________________________________________________
consensus TCACTTATGCCATTGCTTAGTTTCCATGTAACAAAAAGAAGAGAGGAAATTCTATTACAG
 
. : . : . : . : . : . :
JMFN042A18+ TTGACACAAGTGTATCACTAAGACTTTGCTAAGGAATATTCTCAAACACGATTTTCCAGT
rJMFF019H05- TTGACACAAGTGTATCACTAAGACTTTGCTAAGGAATATTCTCAAACACGATTTTCCAGT
rJMSF018M19- TTGACACAAGTGTATCACTAAGACTTTGCTAAGGAATATTCTCAAACACGATTTTCCAGT
rJMSF051M05- TTGACACAAGTGTATCACTAAGACTTTGCTAAGGAATATTCTCAAACACGATTTTCCAGT
                      ____________________________________________________________
consensus TTGACACAAGTGTATCACTAAGACTTTGCTAAGGAATATTCTCAAACACGATTTTCCAGT
 
. : . : . : . : . : . :
JMFN042A18+ TTTCTGAGCCGAAATACACTACAA-TTTTTTTTTTTGGAAAAATAGAAATATTCTGCAGC
rJMFF019H05- TTTCTGAGCCGAAATACACTACAA-TTTTTTTTTTTGGAAAAATANAAATATTCTGCAGC
rJMSF018M19- TTTCTGAGCCGAAATACACTACAA-TTTTTTTTTTTGGAAAAATANAAATATTCTGCAGC
rJMSF051M05- TTTCTGAGCCGAAATACACTACAATTTTTTTTTTTTGGAAAAATANAAATATTCNGCAGC
                      ____________________________________________________________
consensus TTTCTGAGCCGAAATACACTACAA-TTTTTTTTTTTGGAAAAATAGAAATATTCTGCAGC
 
. : . : . : . : . : . :
JMFN042A18+ AAGGCGACTATGAGAGCACAGCCATTATATCGGATGCCCTCAATGCAATGTACTCAGAAC
rJMFF019H05- AAGGCGACTATGANAGCACAGCCATTATATCGGATGCCCTCAATGCAATGTACTCANAAC
rJMSF018M19- ANGGCGACTATGANAGCACAGCCNTTATATCGGATGCCCTCAATGCAATGTACTCANAAC
rJMSF051M05- ANGGNGACTATGANAGCNCAGCCNTTATATCGGANGCCCNCAANGCAANGTACNCAAAAC
                      ____________________________________________________________
consensus AAGGCGACTATGAGAGCACAGCCATTATATCGGATGCCCTCAATGCAATGTACTCAGAAC
 
. : . : . : . : . : . :
JMFN042A18+ CATCACTGCCTTTAAACTCATTGCCAGC-ATACTTGGAATACAGTACGGTGTTTCCAGAA
rJMFF019H05- CATCACTGCCTTTAAACTCATTGCCAGCAATACTTGGAATACAGTACGGNGTTTCCANAA
rJMSF018M19- CATCACTGCCTTTAAACTCATTGCCAGC-ATACTTGGAATACAGTACGGNGTTTCCAGAA
rJMSF051M05- CATCNCNGCCTTTAAACTCATTGCCAGC-ATACTTGGAATACAGTACGGGGTTTCCANAA
                      ____________________________________________________________
consensus CATCACTGCCTTTAAACTCATTGCCAGC-ATACTTGGAATACAGTACGGTGTTTCCAGAA
 
. : . : . : . : . : . :
JMFN042A18+ CTAACTGGTAAAGGTTTCCTGTTTCCTTCTTCATCAAGAGGACCAGGTCCAACAGCTACA
rJMFF019H05- CTAACTGGTAAAGGTTTCCTGTTTCCTTCTTCATCAANAGGACCAGGTCCAACAGCTACA
rJMSF018M19- CTAACNGGNAAAGGTTTCCNGTTTCCTTCTTCATCAAGAGGACCAGGTCCAACAGCTACA
rJMSF051M05- CTAACNGGNAAAGGTTTCCNGTTTCCTTCTTCATCAAGAGGACCAGGTCCAACAGCTACA
JMFN040K16+ CCAGGTCCAACAGCTACA
                      ____________________________________________________________
consensus CTAACTGGTAAAGGTTTCCTGTTTCCTTCTTCATCAAGAGGACCAGGTCCAACAGCTACA
 
. : . : . : . : . : . :
JMFN042A18+ ACCGTGCCAATGGAAGGCTTCTCCTTGGTAGCCTCAGTAAGCAGCAACCCTCCTGCAGTT
rJMFF019H05- ACCGNGCCAATGGAAGGCTTCTCCTTGGTAGCCTCAGTAAGCAGCAACCCTCCTGCAGTT
rJMSF018M19- ACCGNGCCAATGGAAGGCTTCNCCTTGGTAGCCTCAGTAAGCAGCAACCCTCCNGCAGTT
rJMSF051M05- ACCGGGCCAANGGAAGGCTTCNCCTTGGTAGCCNCAGTAAGCAGCAACCCNCCNGCAGTT
JMFN040K16+ ACCGTGCCAATGGAAGGCTTCTCCTTGGTAGCCTCAGTAAGCAGCAACCCTCCTGCAGTT
                      ____________________________________________________________
consensus ACCGTGCCAATGGAAGGCTTCTCCTTGGTAGCCTCAGTAAGCAGCAACCCTCCTGCAGTT
 
. : . : . : . : . : . :
JMFN042A18+ TTTTCTTCGGCCTCAGCAACCTTTATTAAAACCCTGTCATTGAGGGGTTTCATGTCCTTG
rJMFF019H05- TTTTCTTCGGCCTCAGCAACCTTTATTAAAACCCTGTCATTGAGGGGTTTCATGTCCTTG
rJMSF018M19- TTTTCTTCGGCCTCAGCAACCTTTATTAAAACCCTGTCATTGAGGGGTTTCANGTCCTTG
rJMSF051M05- TTTTCTTCGGCCTCAGCAACCTTTATTAAAACCCNGTCATTGAGGGGTTTCANGTCCTTG
JMSF051M05+ TCAGCAACCTTTATTAAAACCCTGTCATTGAGGGGTTTCATGTCCTTG
JMFF019H05+ GTCATTGAGGGGTTTCATGTCCTTG
JMFN040K16+ TTTTCTTCGGCCTCAGCAACCTTTATTAAAACCCTGTCATTGAGGGGTTTCATGTCCTTG
                      ____________________________________________________________
consensus TTTTCTTCGGCCTCAGCAACCTTTATTAAAACCCTGTCATTGAGGGGTTTCATGTCCTTG
 
. : . : . : . : . : . :
JMFN042A18+ ACATCATCTGTTTCAAGAGTACCAACAATGTCATCCTCTTTCAAAATGAGATGATTGGTT
rJMFF019H05- ACATCATCTGTTTCAANAGTACCAACAATGTCATCCTCTTTCAAAATGANATGATTGGTT
rJMSF018M19- ACATCATCTGTTTCAAGAGTACCAACAANGTCATCCTCTTTCAAAATGANATGATNGGTT
rJMSF051M05- ACATCATCNGTTTCAAGAGTACCAACAANGTCANCCNCTTTCAAAANGANATGATNGGTT
JMSF051M05+ ACATCATCTGTTTCAAGAGTACCAACAATGTCATCCTCTTTCAAAATGAGATGATTGGTT
JMFF019H05+ ACATCATCTGTTTCAAGAGTACCAACAATGTCATCCTCTTTCAAAATGAGATGATTGGTT
JMFN040K16+ ACATCATCTGTTTCAAGAGTACCAACAATGTCATCCTCTTTCAAAATGAGATGATTGGTT
                      ____________________________________________________________
consensus ACATCATCTGTTTCAAGAGTACCAACAATGTCATCCTCTTTCAAAATGAGATGATTGGTT
 
. : . : . : . : . : . :
JMFN042A18+ CCATCGAACTCAACCTCTGTCCCAGCATATTTTGAGTATACA
rJMFF019H05- CCATCGAACTCAACCTCTGTCCCAGCATATTTTGAGTATACAACCTGGGCTCCAGTCTTC
rJMSF018M19- CCATCGAACTCAACCTCTGTCCCAGCATATTTTGAGTATACAACCNGGGCTCCAGTCTTC
rJMSF051M05- CCATCGAACTCAACCTCNGTCCCAGCANATTTTGAGTATACAACCTGGGCTCCAGTCTTC
JMSF051M05+ CCATCGAACTCAACCTCTGTCCCAGCATATTTTGAGTATACAACCTGGGCTCCAGTCTTC
JMFF019H05+ CCATCGAACTCAACCTCTGTCCCAGCATATTTTGAGTATACAACCTGGGCTCCAGTCTTC
JMFN033A22+ TTC
JMFN040K16+ CCATCGAACTCAACCTCTGTCCCAGCATATTTTGAGTATACAACCTGGGCTCCAGTCTTC
                      ____________________________________________________________
consensus CCATCGAACTCAACCTCTGTCCCAGCATATTTTGAGTATACAACCTGGGCTCCAGTCTTC
 
. : . : . : . : . : . :
rJMFF019H05- ANACTGACGTCCACCTTAGTCTTTCCAATTGTTCGGCCCTCTCCCACAGCAACAACCTCA
rJMSF018M19- AGACNGACGTCCACCTTAGTCTTTCCAATTGTTCGGCCCTCTCCCACAGCAACAACCTCA
rJMSF051M05- ANACTGACGTCCACCTTAGTCTTTCCAATTGTTCGGCCCTCTCCCACAGCAACAACCTCA
JMSF051M05+ AGACTGACGTCCACCTTAGTCTTTCCAATTGTTCGGCCCTCTCCCACAGCAACAACCTCA
JMFF019H05+ AGACTGACGTCCACCTTAGTCTTTCCAATTGTTCGGCCCTCTCCCACAGCAACAACCTCA
JMFN033A22+ AGACTGACGTCCACCTTAGTCTTTCCAATTGTTCGGCCCTCTCCCACAGCAACAACCTCA
JMFN040K16+ AGACTGACGTCCACCTTAGTCTTTCCAATTGTTCGGCCCTCTCCCACAGCAACAACCTCA
JMSF018M19+ TCTTTCCAATTGTTCGGCCCTCTCCCACAGCAACAACCTCA
                      ____________________________________________________________
consensus AGACTGACGTCCACCTTAGTCTTTCCAATTGTTCGGCCCTCTCCCACAGCAACAACCTCA
 
. : . : . : . : . : . :
rJMFF019H05- CCACCCTGGGGTTTTGATTGTGCTGTTGTTGG
rJMSF018M19- CCACCCTGGGGTTTTGATTGTGCTGTTGTTGGAAGTAGTATGCCCCCAACTG
rJMSF051M05- CCACCCTGGGGTTTTGATTGNGCTGTTGTTGGAANTAATATGCCCCCAACTGT
JMSF051M05+ CCACCCTGGGGTTTTGATTGTGCTGTTGTTGGAAGTAGTATGCCCCCAACTGTCTTCTCT
JMFF019H05+ CCACCCTGGGGTTTTGATTGTGCTGTTGTTGGAAGTAGTATGCCCCCAACTGTCTTCTCT
JMFN033A22+ CCACCCTGGGGTTTTGATTGTGCTGTTGTTGGAAGTAGTATGCCCCCAACTGTCTTCTCT
JMFN040K16+ CCACCCTGGGGTTTTGATTGTGCTGTTGTTGGAAGTAGTATGCCCCCAACTGTCTTCTCT
JMSF018M19+ CCACCCTGGGGTTTTGATTGTGCTGTTGTTGGAAGTAGTATGCCCCCAACTGTCTTCTCT
                      ____________________________________________________________
consensus CCACCCTGGGGTTTTGATTGTGCTGTTGTTGGAAGTAGTATGCCCCCAACTGTCTTCTCT
 
. : . : . : . : . : . :
JMSF051M05+ TCAGAAGTCTTTATCTTCACCAACACTCTATCTGCCAGTGGCTTAAGTGTAGTGTACTTA
JMFF019H05+ TCAGAAGTCTTTATCTTCACCAACACTCTATCTGCCAGTGGCTTAAGTGTAGTGTACTTA
JMFN033A22+ TCAGAAGTCTTTATCTTCACCAACACTCTATCTGCCAGTGGCTTAAGTGTAGTGTACTTA
JMFN040K16+ TCAGAAGTCTTTATCTTCACCAACACTCTATCTGCCAGTGGCTTAAGTGTAGTGTACTTA
JMSF018M19+ TCAGAAGTCTTTATCTTCACCAACACTCTATCTGCCAGTGGCTTAAGTGTAGTGTACTTA
                      ____________________________________________________________
consensus TCAGAAGTCTTTATCTTCACCAACACTCTATCTGCCAGTGGCTTAAGTGTAGTGTACTTA
 
. : . : . : . : . : . :
JMSF051M05+ GGGGCAACAGTAGTAGCGGCCCTGACGACGAGACCCCGGAAGGGGCTGTTTGCGCTCTGC
JMFF019H05+ GGGGCAACAGTAGTAGCGGCCCTGACGACGAGACCCCGGAAGGGGCTGTTTGCGCTCTGC
JMFN033A22+ GGGGCAACAGTAGTAGCGGCCCTGACGACGAGACCCCGGAAGGGGCTGTTTGCGCTCTGC
JMFN040K16+ GGGGCAACAGTAGTAGCGGCCCTGACGACGAGACCCCGGAAGGGGCTGTTTGCGCTCTGC
JMSF018M19+ GGGGCAACAGTAGTAGCGGCCCTGACGACGAGACCCCGGAAGGGGCTGTTTGCGCTCTGC
                      ____________________________________________________________
consensus GGGGCAACAGTAGTAGCGGCCCTGACGACGAGACCCCGGAAGGGGCTGTTTGCGCTCTGC
 
. : . : . : . : . : . :
JMSF051M05+ CTATGAGGAGCGAAAGACGCAACCTTTACGGTGTTAGTGGACCTGAGCCCATCAAAGGAA
JMFF019H05+ CTATGAGGAGCGAAAGACGCAACCTTTACGGTGTTAGTGGACCTGAGCCCATCAAAGGAA
JMFN033A22+ CTATGAGGAGCGAAAGACGCAACCTTTACGGTGTTAGTGGACCTGAGCCCATCAAAGGAA
JMFN040K16+ CTATGAGGAGCGAAAGACGCAACCTTTACGGTGTTAGTGGACCTGAGCCCATCAAAGGAA
JMSF018M19+ CTATGAGGAGCGAAAGACGCAACCTTTACGGTGTTAGTGGACCTGAGCCCATCAAAGGAA
                      ____________________________________________________________
consensus CTATGAGGAGCGAAAGACGCAACCTTTACGGTGTTAGTGGACCTGAGCCCATCAAAGGAA
 
. : . : . : . : . : . :
JMSF051M05+ GCAAATCCCTTGGCGGAGATGGTTGAAGCAGTGAGCTGAATTGATGCCATTCCCTG
JMFF019H05+ GCAAATCCCTTGGCGGAGATGGTTGAAGCAGTGAGCTGAATTGATGCCATTCCCTG
JMFN033A22+ GCAAATCCCTTGGCGGAGATGGTTGAAGCAGTGAGCTGAATTGATGCCATTCCCTG
JMFN040K16+ GCAAATCCCTTGGCGGAGATGGTTGAAGCAGTGAGCTGAATTGATGCCATTCCCTGAGTA
JMSF018M19+ GCAAATCCCTTGGCGGAGATGGTTGAAGCAGTGAGCTGAATTGATGCCATTCCCTGAGTA
                      ____________________________________________________________
consensus GCAAATCCCTTGGCGGAGATGGTTGAAGCAGTGAGCTGAATTGATGCCATTCCCTGAGTA
 
. : . : . : . : . : . :
JMFN040K16+ TTAGGA
JMSF018M19+ TTAGGAAGAATGCAGTGGAGAAACCGAGGAATGGAGAGTGTGGAATGAGGATAGTGTTGA
                      ____________________________________________________________
consensus TTAGGAAGAATGCAGTGGAGAAACCGAGGAATGGAGAGTGTGGAATGAGGATAGTGTTGA
 
. : . : . : . : . : . :
JMSF018M19+ GTGATAATTGCTTGTAGGGGATAATAAAACCCTAGAAGGTTCGAGAGGGATGGGTCGACC
                      ____________________________________________________________
consensus GTGATAATTGCTTGTAGGGGATAATAAAACCCTAGAAGGTTCGAGAGGGATGGGTCGACC