Contig 002173:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015N03Sequence492002173 (2)ref|XP_009771164.1|4e-44PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [Ni653001434 (2)gb|AES75162.2|3e-04RNA polymerase II-binding domain protein [Medicago truncatula]
JMSF037J07Sequence681002173 (2)ref|XP_006352321.1|2e-79PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like [So760001434 (2)ref|XP_004250299.1|3e-09PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1A-like [So

Alignment

This contig is upended


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JMSF037J07+                                                  ATAGGAGTNGGATTCTTGCCA
                      ____________________________________________________________
consensus                                                    ATAGGAGTNGGATTCTTGCCA
 
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JMSF037J07+           TTGCTGACTGGTAAAGATGGATTTTTGCCCAGCACTTCATCTTTAAGAAGTTGACCCCTA
                      ____________________________________________________________
consensus             TTGCTGACTGGTAAAGATGGATTTTTGCCCAGCACTTCATCTTTAAGAAGTTGACCCCTA
 
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JMSF037J07+           GATCCAAAAACTTTTCTCTCTTCCCATATGTCAACCAATCTGGATGCAACTTTCTTCCCA
                      ____________________________________________________________
consensus             GATCCAAAAACTTTTCTCTCTTCCCATATGTCAACCAATCTGGATGCAACTTTCTTCCCA
 
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JMSF037J07+           GATTCATGACCACTTTCATAAACATGCTTAAGAGCAGCTGGTAGGACCTTCCAGAATTCA
JMSF015N03+                                                           TTCCAGAATTCA
                      ____________________________________________________________
consensus             GATTCATGACCACTTTCATAAACATGCTTAAGAGCAGCTGGTAGGACCTTCCAGAATTCA
 
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JMSF037J07+           TTGACAAACTCACTGCCTCTGCGACGACTATTTTGCAGGATATCATTGGCCAAATATAAA
JMSF015N03+           TTGACAAACTCACTGCCTCTGCGACGACTATTTTGCAGGATATCATTGGCCAAATATAAA
                      ____________________________________________________________
consensus             TTGACAAACTCACTGCCTCTGCGACGACTATTTTGCAGGATATCATTGGCCAAATATAAA
 
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JMSF037J07+           AATGCAACACGCTGCTCTTTCTGTGCAGATTTAAATAATTTATCCCATGTTTCAACAATT
JMSF015N03+           AATGCAACACGCTGCTCTTTCTGTGCAGATTTAAATAATTTATCCCATGTTTCAACAATT
                      ____________________________________________________________
consensus             AATGCAACACGCTGCTCTTTCTGTGCAGATTTAAATAATTTATCCCATGTTTCAACAATT
 
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JMSF037J07+           TGCTTGGATTTTTTCCTGAATGAAGTGCACCAACGAGACAATGATTCTATGCTTTGTTGT
JMSF015N03+           TGCTTGGATTTTTTCCTGAATGAAGTGCACCAACGAGACAATGATTCTATGCTTTGTTGT
                      ____________________________________________________________
consensus             TGCTTGGATTTTTTCCTGAATGAAGTGCACCAACGAGACAATGATTCTATGCTTTGTTGT
 
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JMSF037J07+           GAACTGTTAAGTTTAGACAACTTTTCAGTCAATGTTTGCCCATCAAAAGCTTCATCACCC
JMSF015N03+           GAACTGTTAAGTTTAGACAACTTTTCAGTCAATGTTTGCCCATCAAAAGCTTCATCACCC
                      ____________________________________________________________
consensus             GAACTGTTAAGTTTAGACAACTTTTCAGTCAATGTTTGCCCATCAAAAGCTTCATCACCC
 
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JMSF037J07+           ATCCTCTTGCTTGTGATGCTTACACTAAAACTCCCGGAAAATTAAAAGCTCACTCAGTTT
JMSF015N03+           ATCCTCTTGCTTGTGATGCTTACACTAAAACTCCCGGAAAATTAAAAGCTCACTCAGTTT
                      ____________________________________________________________
consensus             ATCCTCTTGCTTGTGATGCTTACACTAAAACTCCCGGAAAATTAAAAGCTCACTCAGTTT
 
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JMSF037J07+           TCCCCGAACTCAAGGAACAGTCTCAAACTGAAACGCTTTCATTCTCTCCACATTTGCACT
JMSF015N03+           TCCCCGAACTCAAGGAACAGTCTCAAACTGAAACGCTTTCATTCTCTCCACATTTGCACT
                      ____________________________________________________________
consensus             TCCCCGAACTCAAGGAACAGTCTCAAACTGAAACGCTTTCATTCTCTCCACATTTGCACT
 
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JMSF037J07+           CCTGGAGCAATCAATTTCAAAAATCCTCGGTTTAGATGGTCGGAGCTTCAGAAACCCTAG
JMSF015N03+           CCTGGAGCAATCAATTTCAAAAATCCTCGGTTTAGATGGTCGGAGCTTCAGAAACCCTAG
                      ____________________________________________________________
consensus             CCTGGAGCAATCAATTTCAAAAATCCTCGGTTTAGATGGTCGGAGCTTCAGAAACCCTAG
 
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JMSF037J07+           CTGAGAGAAAGGAATTGGGTGGGAATGAGAGGGGCAGCGGTTTAACGGAGCCTCTTGTCC
JMSF015N03+           CTGAGAGAAAGGAATTGGGTGGGAATGAGAGGGGCAGCGGTTTAACGGAGCCTCTTGTCC
                      ____________________________________________________________
consensus             CTGAGAGAAAGGAATTGGGTGGGAATGAGAGGGGCAGCGGTTTAACGGAGCCTCTTGTCC