Contig 002169:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS124D04Sequence572002169 (3)
JMSF015J09Sequence586002169 (3)774005649 (2)ref|XP_009797500.1|4e-28PREDICTED: WPP domain-interacting protein 2 [Nicotiana sylvestris] ref|XP_009797
JMSF045O15Sequence729002169 (3)ref|XP_009776682.1|2e-34PREDICTED: WPP domain-interacting protein 1 [Nicotiana sylvestris]627005649 (2)ref|XP_009797500.1|2e-14PREDICTED: WPP domain-interacting protein 2 [Nicotiana sylvestris] ref|XP_009797

Alignment

This contig is upended


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JMSF045O15+                               TCACCCAGTTCTTATCACGTCCATGTTCAACAACCACAGG
                      ____________________________________________________________
consensus                                 TCACCCAGTTCTTATCACGTCCATGTTCAACAACCACAGG
 
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JMSF045O15+           TTTGGTGTACCGCATTTTTGGGGCACTAGCTGCAGTTGAAGACCTACTGCTCTGACCCTC
                      ____________________________________________________________
consensus             TTTGGTGTACCGCATTTTTGGGGCACTAGCTGCAGTTGAAGACCTACTGCTCTGACCCTC
 
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JMSF045O15+           ACTGTTCTCCGAGTCCGTCCCAGCCATGAAAGCAGGTCCATTAACTGCCCCTGTATCACC
                      ____________________________________________________________
consensus             ACTGTTCTCCGAGTCCGTCCCAGCCATGAAAGCAGGTCCATTAACTGCCCCTGTATCACC
 
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JMSF045O15+           AATTCCACCAAAGCAATCAAACAGCTGACCAGGACTCCTCATAAAGGCAACTGTAGATGA
                      ____________________________________________________________
consensus             AATTCCACCAAAGCAATCAAACAGCTGACCAGGACTCCTCATAAAGGCAACTGTAGATGA
 
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JMSF045O15+           ATTAGATCCCTCACTTTTCTGCATTACTCCAGCAGAAAAATGCCCAGGTTTCGCTGGATT
                      ____________________________________________________________
consensus             ATTAGATCCCTCACTTTTCTGCATTACTCCAGCAGAAAAATGCCCAGGTTTCGCTGGATT
 
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JMSF045O15+           ATTACCTCCTGAATGTGACAAACCCCTCTTCAACATCTTGCTAGTGTCTATGTTAGTATC
                      ____________________________________________________________
consensus             ATTACCTCCTGAATGTGACAAACCCCTCTTCAACATCTTGCTAGTGTCTATGTTAGTATC
 
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JMSF045O15+           CCCATCCATCCGTGCTTCTTTTTTGAACCTCCTCCATTTCCTCAAACCCTTTCCTTTCGT
JMFS124D04+                                                                      T
                      ____________________________________________________________
consensus             CCCATCCATCCGTGCTTCTTTTTTGAACCTCCTCCATTTCCTCAAACCCTTTCCTTTCGT
 
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JMSF045O15+           ACTCATAGGTATAGGTGTAGATTTGACATCCACAACTGGAGGCATATCCCCAGCCTCCTC
JMFS124D04+           ACTCATAGGTATAGGTGTAGATTTGACATCCACAACTGGAGGCATATCCCCAGCCTCCTC
                      ____________________________________________________________
consensus             ACTCATAGGTATAGGTGTAGATTTGACATCCACAACTGGAGGCATATCCCCAGCCTCCTC
 
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JMSF045O15+           CACAACTTCATTTCCCTTCCCATTCATTTGCTTTTGCTCAGCCACGCCACATCCATTATT
JMFS124D04+           CACAACTTCATTTCCCTTCCCATTCATTTGCTTTTGCTCAGCCACGCCACATCCATTATT
JMSF015J09+                         CCTTCCCATTCATTNGCTTTTGNTCAGCCACGCCACATCCATTATT
                      ____________________________________________________________
consensus             CACAACTTCATTTCCCTTCCCATTCATTTGCTTTTGCTCAGCCACGCCACATCCATTATT
 
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JMSF045O15+           TGACACTTGTTGTTCAGCCGAATTAGTATCCAACTTTTCAGCATTTATATTGCTTATTGC
JMFS124D04+           TGACACTTGTTGTTCAGCCGAATTAGTATCCAACTTTTCAGCATTTATATTGCTTATTGC
JMSF015J09+           TGACACTTGTTGTTCAGCCGAATTAGTATCCAACTTTTCAGCATTTATATTGCTTATTGC
                      ____________________________________________________________
consensus             TGACACTTGTTGTTCAGCCGAATTAGTATCCAACTTTTCAGCATTTATATTGCTTATTGC
 
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JMSF045O15+           TTCGTTATCCTGCGCAGATTCAAGAGCTGAACATTCCCTCTCCAATTCCATCACT     
JMFS124D04+           TTCGTTATCCTGCGCAGATTCAAGAGCTGAACATTCCCTCTCCAATTCCATCACTACAAC
JMSF015J09+           TTCGTTATCCTGCGCAGATTCAAGAGCTGAACATTCCCTCTCCAATTCCATCACTACAAC
                      ____________________________________________________________
consensus             TTCGTTATCCTGCGCAGATTCAAGAGCTGAACATTCCCTCTCCAATTCCATCACTACAAC
 
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JMFS124D04+           AATTACAAAACTTTCAGCTCAGATGAAGAAAGCTCAGAAATCCAATATCAAAATCAGATC
JMSF015J09+           AATTACAAAACTTTCAGCTCAGATGAAGAAAGCTCAGAAATCCAATATCAAAATCAGATC
                      ____________________________________________________________
consensus             AATTACAAAACTTTCAGCTCAGATGAAGAAAGCTCAGAAATCCAATATCAAAATCAGATC
 
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JMFS124D04+           AAGATCAAGAAGTAGCGACTGAAATTCCGGCAGAGGATTAATTGATCATAATCTTGAAAT
JMSF015J09+           AAGATCAAGAAGTAGCGACTGAAATTCCGGC--AGGATTAATTGATCATAATCTTGAAAT
                      ____________________________________________________________
consensus             AAGATCAAGAAGTAGCGACTGAAATTCCGGCAGAGGATTAATTGATCATAATCTTGAAAT
 
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JMFS124D04+           CCGCTAAAACTGATAACTCTCTCTTTTTTTCTTTTTTCTTTTTTAAATGGAGTAGTTAGA
JMSF015J09+           CCGCTAAAACTGATAACTCTCTCTTTTTTTCTTTTTTCTTTTTTAAATGGAGTAGTTAGA
                      ____________________________________________________________
consensus             CCGCTAAAACTGATAACTCTCTCTTTTTTTCTTTTTTCTTTTTTAAATGGAGTAGTTAGA
 
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JMFS124D04+           AATCAGTATTCTCCGATATTGTATCGAATCTCTCAAAACCAGTTGGAATTTAATTTAAGA
JMSF015J09+           AATCAGTATTCTCCGATATTGTATCGAATCTCTCAAAACCAGTTGGAATTTAATTTAAGA
                      ____________________________________________________________
consensus             AATCAGTATTCTCCGATATTGTATCGAATCTCTCAAAACCAGTTGGAATTTAATTTAAGA
 
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JMFS124D04+           GAAGCTAATCAAACTGAAACAAATGAACATTAGGAAGCATAAAGTAATGATCATCGTACC
JMSF015J09+           GAAGCTAATCAAACTGAAACAAATGAACATTAGGAAGCATAAAGTAATGATCATCGTACC
                      ____________________________________________________________
consensus             GAAGCTAATCAAACTGAAACAAATGAACATTAGGAAGCATAAAGTAATGATCATCGTACC
 
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JMFS124D04+           TTTTGTTTCATTATTGTGGATTTTGCAGATG                             
JMSF015J09+           TTTTGTTTCATTATTGTGGATTTTGCAGATGCGGAAATAGAGAAACCCTAGAAGCTCTGT
                      ____________________________________________________________
consensus             TTTTGTTTCATTATTGTGGATTTTGCAGATGCGGAAATAGAGAAACCCTAGAAGCTCTGT
 
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JMSF015J09+           GGATTTGAAGATTTATACCCTCGAAATTTAAGGTGATCAGCAAATCAGCGATCTCTGTTC
                      ____________________________________________________________
consensus             GGATTTGAAGATTTATACCCTCGAAATTTAAGGTGATCAGCAAATCAGCGATCTCTGTTC