Contig 002166:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN004K12Sequence576002166 (3)ref|XP_002325629.1|2e-38ubiquinol-cytochrome C reductase complex ubiquinone-binding family protein [Pop
JMSF015E04Sequence254002166 (3)ref|XP_006435966.1|8e-10hypothetical protein CICLE_v10033444mg, partial [Citrus clementina] gb|ESR49206.663002166 (3)ref|XP_002325629.1|5e-38ubiquinol-cytochrome C reductase complex ubiquinone-binding family protein [Pop

Alignment

This contig is upended


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JMFN004K12+                                                                     GG
                      ____________________________________________________________
consensus                                                                       GG
 
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JMFN004K12+           CAACAACATTGTTTTCACTTGATAGTTTCACAAGCAACATGTGAATATAAGTATATAAGG
rJMSF015E04-                                                                   AGG
                      ____________________________________________________________
consensus             CAACAACATTGTTTTCACTTGATAGTTTCACAAGCAACATGTGAATATAAGTATATAAGG
 
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JMFN004K12+           TCTCTGGTTCTCACATCAAATTCACAATTAACCTCAACATTAGAGGCCAGAAGAGTTTTA
rJMSF015E04-          TCTCTGGTTCTCACATCAAATTCACAATTAACCTCAACATTAGAGGCCAGAAGAGTTTTA
                      ____________________________________________________________
consensus             TCTCTGGTTCTCACATCAAATTCACAATTAACCTCAACATTAGAGGCCAGAAGAGTTTTA
 
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JMFN004K12+           AAATGTGATACCACAGTAACCAGACCAAATACAATAAAGCATTAAGCTTATTAAGTTACA
rJMSF015E04-          AAATGTGATACCACAGTAACCAGACCAAATACAATAAAGCATTAAGCTTATTAAGTTACA
                      ____________________________________________________________
consensus             AAATGTGATACCACAGTAACCAGACCAAATACAATAAAGCATTAAGCTTATTAAGTTACA
 
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JMFN004K12+           GGTAAAGAATAATCACAAGATATCAAAACTTGAACAGTATGACTGATTCTGGTTGCGAAT
rJMSF015E04-          GGTAAAGAATAATCACAAGATATCAAAACTTGAACAGTATGACTGATTCTGGTTGCGAAT
                      ____________________________________________________________
consensus             GGTAAAGAATAATCACAAGATATCAAAACTTGAACAGTATGACTGATTCTGGTTGCGAAT
 
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JMFN004K12+           CGCATTTGACTTATTTTCGGGTGGAATTTGAATAAAAATGGTTAAATGGGAGCTTTTGCC
rJMSF015E04-          CGCATTTGACTTATTTTCGGGTGGAATTTGAATAAAAATGGTTAAATGGGAGCTTTTGCC
                      ____________________________________________________________
consensus             CGCATTTGACTTATTTTCGGGTGGAATTTGAATAAAAATGGTTAAATGGGAGCTTTTGCC
 
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JMFN004K12+           AAACATACGAAGTACTTTTGATAGCTAGCTTCAGTATCTGTGAGCTAACTTCTCCTTTTC
rJMSF015E04-          AAACATACGAAGTACTTTTGATAGCTAGCTTCAGTATCTGTGAGCTAACTTCTCCTTTTC
                      ____________________________________________________________
consensus             AAACATACGAAGTACTTTTGATAGCTAGCTTCAGTATCTGTGAGCTAACTTCTCCTTTTC
 
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JMFN004K12+           CTGGTATTGCTGCACATATGTGTAGACGCCGACGAGAGGACCGAGGAGGAGGGAGGCGCT
rJMSF015E04-          CTGGTATTGCTGCACATATGTGTAGACGCCGACGAGAGGACCGAGGAGGAGGGAGGCGCT
                      ____________________________________________________________
consensus             CTGGTATTGCTGCACATATGTGTAGACGCCGACGAGAGGACCGAGGAGGAGGGAGGCGCT
 
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JMFN004K12+           GATCCAGTTCTCGGAGACCTTGTGGTTGATCTTACCGGGAAGGTCCTTCCAAAGTCCAGG
rJMSF015E04-          GATCCAGTTCTCGGAGACCTTGTGGTTGATCTTACCGGGAAGGTCCTTCCAAAGTCCAGG
JMSF015E04+                                                         TTCCAAAGTCCAGG
                      ____________________________________________________________
consensus             GATCCAGTTCTCGGAGACCTTGTGGTTGATCTTACCGGGAAGGTCCTTCCAAAGTCCAGG
 
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JMFN004K12+           CATCACCTTCTGCTGGAACGGCGATAGCGCGTAAACAACAGCCTTCAACCTCACTGGCTG
rJMSF015E04-          CATCACCTTCTGCTGGAACGGCGATAGCGCGTAAACAACAGCCTTCAACCTCACTGGCTG
JMSF015E04+           CATCACCTTCTGCTGGAACGGCGATAGCGCGTAAACAACAGCCTTCAACCTCACTGGCTG
                      ____________________________________________________________
consensus             CATCACCTTCTGCTGGAACGGCGATAGCGCGTAAACAACAGCCTTCAACCTCACTGGCTG
 
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JMFN004K12+           CTTCCCCAT                                                   
rJMSF015E04-          CTTCCCCATATCCTCAAACTGCAATCTCTTCTTCTTCTTCTTCTTCTTTGGGTTGCGCGG
JMSF015E04+           CTTCCCCATATCCTCAAACTGCAATCTCTTCTTCTTCTTCTTCTTCTTTGGGTTGCGCGG
                      ____________________________________________________________
consensus             CTTCCCCATATCCTCAAACTGCAATCTCTTCTTCTTCTTCTTCTTCTTTGGGTTGCGCGG
 
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rJMSF015E04-          TGTGCTAGGGCTTCAGATCGTTGAGAAGAAAATGGAAGGTTCTCATCGCCTACGAATATG
JMSF015E04+           TGTGCTAGGGCTTCAGATCGTTGAGAAGAAAATGGAAGGTTCTCATCGCCTACGAATATG
                      ____________________________________________________________
consensus             TGTGCTAGGGCTTCAGATCGTTGAGAAGAAAATGGAAGGTTCTCATCGCCTACGAATATG
 
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rJMSF015E04-          AACAGAACAGATGAAGTAGCCACCGCTGAGGAAATCTTCCATAGGACTCGGTCCTCCGCC
JMSF015E04+           AACAGAACAGATGAAGTAGCCACCGCTGAGGAAATCTTCCATAGGACTCGGTCCTCCGCC
                      ____________________________________________________________
consensus             AACAGAACAGATGAAGTAGCCACCGCTGAGGAAATCTTCCATAGGACTCGGTCCTCCGCC