| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF039I21 | Sequence | 268 | 002148 (5) | gb|ACB37380.1| | 3e-05 | 5-enolpyruvylshikimate 3-phosphate synthase [Calystegia hederacea] | 666 | 009846 (3) | gb|ACB37380.1| | 1e-99 | 5-enolpyruvylshikimate 3-phosphate synthase [Calystegia hederacea] |
| JMFF049G07 | Sequence | 425 | 002148 (5) | gb|ACB37380.1| | 5e-62 | 5-enolpyruvylshikimate 3-phosphate synthase [Calystegia hederacea] | 318 | 009846 (3) | ref|NP_001268176.1| | 6e-24 | 5-enolpyruvylshikimate-3-phosphate synthase [Vitis vinifera] emb|CBI38903.3| unn |
| JMSF012P02 | Sequence | 393 | 002148 (5) | 776 | 008473 (2) | gb|ACB37380.1| | 3e-115 | 5-enolpyruvylshikimate 3-phosphate synthase [Calystegia hederacea] | |||
| JMSF032M23 | Sequence | 651 | 002148 (5) | gb|ACB37380.1| | 1e-98 | 5-enolpyruvylshikimate 3-phosphate synthase [Calystegia hederacea] | 584 | 009846 (3) | ref|NP_001268176.1| | 3e-85 | 5-enolpyruvylshikimate-3-phosphate synthase [Vitis vinifera] emb|CBI38903.3| unn |
| JMSF053M17 | Sequence | 582 | 002148 (5) | gb|ACB37380.1| | 5e-10 | 5-enolpyruvylshikimate 3-phosphate synthase [Calystegia hederacea] | 907 | 008473 (2) | gb|ACB37380.1| | 7e-116 | 5-enolpyruvylshikimate 3-phosphate synthase [Calystegia hederacea] |
This contig is upended
. : . : . : . : . : . :
JMSF032M23+ GAACTCCATCAAGTACGTATCTTGCATTTCCACCGGCAGCAACAACTGCAGCAGTCAAT
____________________________________________________________
consensus GAACTCCATCAAGTACGTATCTTGCATTTCCACCGGCAGCAACAACTGCAGCAGTCAAT
. : . : . : . : . : . :
JMSF032M23+ GGTCGCATTGCTGTTCCAGCATTTCCCAGGAAAAGTTGAATTTCGTCCGTGGATTGCTTA
____________________________________________________________
consensus GGTCGCATTGCTGTTCCAGCATTTCCCAGGAAAAGTTGAATTTCGTCCGTGGATTGCTTA
. : . : . : . : . : . :
JMSF032M23+ CTGGCAGGGAAGAGACCACCCGAACCTTCTACAGTTGCTCGCTGGATTGCGTTATCTTCT
____________________________________________________________
consensus CTGGCAGGGAAGAGACCACCCGAACCTTCTACAGTTGCTCGCTGGATTGCGTTATCTTCT
. : . : . : . : . : . :
JMFF049G07+ AAGACCAAGCGTTCTCAATGCACCGAGCATATAATTAATATCATCACTGCTT
JMSF032M23+ TCAACACGAAGACCAAGCGTTCTCAATGCACCGAGCATATAATTAATATCATCACTGCTT
____________________________________________________________
consensus TCAACACGAAGACCAAGCGTTCTCAATGCACCGAGCATATAATTAATATCATCACTGCTT
. : . : . : . : . : . :
JMFF049G07+ AGTAAATNGTCTACCACAGTTGTTCCCTGAGAAAGAGCAGCAAGGAGGAGAATGCGATTG
JMSF032M23+ AGTAAATTGTCTACCACAGTTGTTCCCTGAGAAAGAGCAGCAAGGAGGAGAATGCGATTG
____________________________________________________________
consensus AGTAAATTGTCTACCACAGTTGTTCCCTGAGAAAGAGCAGCAAGGAGGAGAATGCGATTG
. : . : . : . : . : . :
JMFF049G07+ GAGAGGGATTTAGAGCCGGGCAACTTGACGGTGCCGGAGATCTCTTTGATGGGCTGCAGC
JMSF032M23+ GAGAGGGATTTAGAGCCGGGCAACTTGACGGTGCCGGAGATCTCTTTGATGGGCTGCAGC
____________________________________________________________
consensus GAGAGGGATTTAGAGCCGGGCAACTTGACGGTGCCGGAGATCTCTTTGATGGGCTGCAGC
. : . : . : . : . : . :
JMFF049G07+ ACAATCTCCTCCGGCGCCTTCGATGGCTTTTCGGCGGTGACCACCGATGCCCGGACCTGT
JMSF032M23+ ACAATCTCCTCCGGCGCCTTCGATGGCTTTTCGGCGGTGACCACCGATGCCCGGACCTGT
JMSF053M17+ TTCGATGGCTTTTTGGTGGTGGCCACCGATGCCCTGACCTGT
____________________________________________________________
consensus ACAATCTCCTCCGGCGCCTTCGATGGCTTTTCGGCGGTGACCACCGATGCCCGGACCTGT
. : . : . : . : . : . :
JMFF049G07+ AACGGCGACCGGGTGGCAATAAAAATCGAATCTTTATTACTCTTCAAGAACTTAACAGAA
JMSF032M23+ AACGGCGACCGGGTGGCAATAAAAATCGAATCTTTATTACTCTTCAAGAACTTAACAGAA
JMFF039I21+ TTCAAGAACTTAACAGAA
JMSF053M17+ AACGGCAACCGGGTGGCAGTAAAAATCGAATCTTTATTACTCTTCAAGAACTTAACAGAA
____________________________________________________________
consensus AACGGCGACCGGGTGGCAATAAAAATCGAATCTTTATTACTCTTCAAGAACTTAACAGAA
. : . : . : . : . : . :
JMFF049G07+ ACAGGTGAATTCTTCAGGCTGCTTGACCCCAACAAAAGGGAATGCGAAGACAGAGGGGTT
JMSF032M23+ ACAGGTGAATTCTTCAGGCTGCTTGACCCCAACAAAAGGGAATGCGAAGACAGAGGGGTT
JMFF039I21+ ACAGGTGAATTCTTCAGGCTGCTTGACCCCAACAAAAGGGAATGCGAAGACAGAGGGGTT
JMSF053M17+ ACAGCTGATTTCTTCAGGCTGCTCGACCCCAACAAAAGCGACCGCGAAGGCAGAGGGGTC
____________________________________________________________
consensus ACAGGTGAATTCTTCAGGCTGCTTGACCCCAACAAAAGGGAATGCGAAGACAGAGGGGTT
. : . : . : . : . : . :
JMFF049G07+ TGAGGTTTAGACAGATTTCTGGGATTCAAACGCTGACCCTGCATCATG
JMSF032M23+ TGAGGTTTAGACAGATTTCTGGGATTCAAACGCTGACCCTGCATCATG
JMFF039I21+ TGAGGTTTAGACAGATTTCTGGGATTCAAACGCTGACCCTGCATCATG
JMSF053M17+ TGAGGTTTGGATAGATTGGTGGGATTCAAACGCAGACCCTGCATCATGTGTGCCATATCC
JMSF012P02+ AAACGCAGACCCTGCATCATGTGTGCCATATCC
____________________________________________________________
consensus TGAGGTTTAGACAGATTTCTGGGATTCAAACGCTGACCCTGCATCATGTGTGCCATATCC
. : . : . : . : . : . :
JMSF053M17+ TCCCACTGCACAGAGCTTGAGACCTTTCAATTGAATTTGGTAGGTGGGTAGCTTGAAAGG
JMSF012P02+ TCCCACTGCACAGAGCTTGAGACCTTTCAATTGAATTTGGTAGGTGGGTAGCTTGAAAGG
____________________________________________________________
consensus TCCCACTGCACAGAGCTTGAGACCTTTCAATTGAATTTGGTAGGTGGGTAGCTTGAAAGG
. : . : . : . : . : . :
JMSF053M17+ GGTGAATCAGAGAGTAGCGTGGCGACAAGAACTTGTATTAGTACAATCCCTCTCAACAAC
JMSF012P02+ GGTGAATCAGAGAGTAGCGTGGCGACAAGAACTTGTATTAGTACAATCCCTCTCAACAAC
____________________________________________________________
consensus GGTGAATCAGAGAGTAGCGTGGCGACAAGAACTTGTATTAGTACAATCCCTCTCAACAAC
. : . : . : . : . : . :
JMSF053M17+ CCACTTCTGGTTGAGCAGGTGGACTCGTTTTATCTTTTGAACCTTAGAGTCACACTGACT
JMSF012P02+ CCACTTCTGGTTGAGCAGGTGGACTCGTTTTATCTTTTGAACCTTAGAGTCACACTGACT
____________________________________________________________
consensus CCACTTCTGGTTGAGCAGGTGGACTCGTTTTATCTTTTGAACCTTAGAGTCACACTGACT
. : . : . : . : . : . :
JMSF053M17+ GACTCAGTGAAGCAGAGACGGGCTGAGGTGAGGCCCGCAGAGCCGCTGAGTCGATGAAGT
JMSF012P02+ GACTCAGTGAAGCAGAGACGGGCTGAGGTGAGGCCCGCAGAGCCGCTGAGTCGATGAAGT
____________________________________________________________
consensus GACTCAGTGAAGCAGAGACGGGCTGAGGTGAGGCCCGCAGAGCCGCTGAGTCGATGAAGT
. : . : . : . : . : . :
JMSF053M17+ GAGGTCTGACGGCGAGGGTGGACCAGAGGCGGTGAGAGACGACGGAGAGAACCGTCGTCG
JMSF012P02+ GAGGTCTGACGGCGAGGGCGGACCAGAGGCGGTGAGAGACGACGGAGAGAACCATCGTCG
____________________________________________________________
consensus GAGGTCTGACGGCGAGGGTGGACCAGAGGCGGTGAGAGACGACGGAGAGAACCGTCGTCG
. : . : . : . : . : . :
JMSF053M17+ AAGAGAATGTGTCTGCGCAGACCTTTGAATTGAATTTGGTAGATTGAAAGGGGTGAATCC
JMSF012P02+ AAGAGAATGTGTCTGCGCAGACCTTTGAATTGAATTTGGTAGATTGAAAGGGGTGAATCC
____________________________________________________________
consensus AAGAGAATGTGTCTGCGCAGACCTTTGAATTGAATTTGGTAGATTGAAAGGGGTGAATCC