Contig 002124:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF048O17Sequence545002124 (7)ref|XP_009766227.1|3e-64PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Nic555002124 (7)ref|XP_004159288.1|1e-27PREDICTED: sec-independent protein translocase protein TATC, chloroplastic-like
JMSF010E16Sequence266002124 (7)ref|XP_009766227.1|3e-12PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Nic736002124 (7)ref|XP_010279415.1|1e-82PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Nel
JMSF041A09Sequence834002124 (7)ref|XP_009766227.1|4e-127PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Nic737002124 (7)ref|XP_010279415.1|1e-75PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Nel
JMSF047O05Sequence706002124 (7)ref|XP_009766227.1|1e-102PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Nic751000235 (181)ref|XP_004145734.1|4e-167PREDICTED: chlorophyll a-b binding protein, chloroplastic-like [Cucumis sativus

Alignment

This contig is upended


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rJMFF048O17-                                       AGATGATGAAAGCAATATTGCAGAGGCCTTG
                      ____________________________________________________________
consensus                                          AGATGATGAAAGCAATATTGCAGAGGCCTTG
 
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rJMFF048O17-          AAAACTCTTTATTTTACAGTGGTAACAAACTTTCACATTAAACAAGAAAGGAAAAACAAA
rJMSF010E16-                                             CATTAAACAAGAAAGGAAAAACAAA
rJMSF041A09-                                             CATTAAACAAGAAAGGAAAAACAAA
                      ____________________________________________________________
consensus             AAAACTCTTTATTTTACAGTGGTAACAAACTTTCACATTAAACAAGAAAGGAAAAACAAA
 
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rJMFF048O17-          TATCATGACGAGAATAGAGTAAATGAAAGGCTATCTATACTATGCTCCAGTATACATTCT
rJMSF010E16-          TATCATGACAAGAATAGAGTAAATGAAAGGCTATCTATACTATGCTCCAGTATACATTCT
rJMSF041A09-          TATCATGACAAGAATAGAGTAAATGAAAGGCTATCTATACTATGCTCCAGTATACATTCT
                      ____________________________________________________________
consensus             TATCATGACAAGAATAGAGTAAATGAAAGGCTATCTATACTATGCTCCAGTATACATTCT
 
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rJMFF048O17-          ATGCTACATAAATCCACGGATCATATTTGAGGACCTGGGCATCTCTGAGCTGCTTGGAAC
rJMSF010E16-          ATGCTACATAAATCCACGGATCATATTTGAGGACCTGGGCATCTCTGAGCTGCTTGGAAC
rJMSF041A09-          ATGCTACATAAATCCACGGATCATATTTGAGGACCTGGGCATCTCTGAGCTGCTTGGAAC
                      ____________________________________________________________
consensus             ATGCTACATAAATCCACGGATCATATTTGAGGACCTGGGCATCTCTGAGCTGCTTGGAAC
 
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rJMFF048O17-          AGATTTTTTGCTCCATCTATTTCCCAGAAAGCTTTACCACCCATGCTCCACCCAAGTAAA
rJMSF010E16-          AGATTTTTTGCTCCATCTATTTCCCAGAAAGCTTTACCACCCATGCTCCACCCAAGTAAA
rJMSF041A09-          AGATTTTTTGCTCCATCTATTTCCCAGAAAGCTTTACCACCCATGCTCCACCCAAGTAAA
                      ____________________________________________________________
consensus             AGATTTTTTGCTCCATCTATTTCCCAGAAAGCTTTACCACCCATGCTCCACCCAAGTAAA
 
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rJMFF048O17-          GCCCCAAAAGCGGGCCGGCAAGCAAAACCTGAGTGAGGGGGTCTGTCGATGGCGTAAGCA
rJMSF010E16-          GCCCCAAAAGCGGGCCGGCAAGCAAAACCTGAGTGAGGGGGTCTGTCGATGGCGTAAGCA
rJMSF041A09-          GCCCCAAAAGCGGGCCGGCAAGCAAAACCTGAGTGAGGGGGTCTGTCGATGGCGTAAGCA
                      ____________________________________________________________
consensus             GCCCCAAAAGCGGGCCGGCAAGCAAAACCTGAGTGAGGGGGTCTGTCGATGGCGTAAGCA
 
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rJMFF048O17-          CAGCAGCTGCAACCACGGCTCCAACCACCACATATCTCCAAATCGACGGCATTTGATCCC
rJMSF010E16-          CAGCAGCTGCAACCACGGCTCCTACCACCACATATCTCCAAATCGACAGCATTTGATCCC
rJMSF041A09-          CAGCAGCTGCAACCACGGCTCCTACCACCACATATCTCCAAATCGACAGCATTTGATCCC
                      ____________________________________________________________
consensus             CAGCAGCTGCAACCACGGCTCCTACCACCACATATCTCCAAATCGACAGCATTTGATCCC
 
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rJMFF048O17-          CAGATACTAGACCGGTTTGCCCCAGAAGCAGCTGCACAACCGGAACCTGGAAAGATAGTC
rJMSF010E16-          CAGATACTAGACCGGTTTGCCCCAGAAGCAGCTGCACAACCGGAACCTGGAAAGATAGTC
rJMSF041A09-          CAGATACTAGACCGGTTTGCCCCAGAAGCAGCTGCACAACCGGAACCTGGAAAGATAGTC
                      ____________________________________________________________
consensus             CAGATACTAGACCGGTTTGCCCCAGAAGCAGCTGCACAACCGGAACCTGGAAAGATAGTC
 
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rJMFF048O17-          CTGTGCTGAACATGAGCACGAGCACAAATT-CAAAGTATTGATCAATGGACCACAATGAT
rJMSF010E16-          CTGTGCTGAACATGAGCACGAGCACAAATT-CAAAGTATTGATCAATGGACCACAATGAT
rJMSF041A09-          CTGTGCTGAACATGAGCACGAGCACAAATT-CAAAGTATTGATCAATGGACCACAATGAT
JMSF041A09+               GCTGAACATGAGCACGAGCACAAATTNCAAAGTATTGATCAATGGACCACAATGAT
                      ____________________________________________________________
consensus             CTGTGCTGAACATGAGCACGAGCACAAATT-CAAAGTATTGATCAATGGACCACAATGAT
 
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rJMFF048O17-          TCCACAGCCCCTTCCGCATAATTAACAAAGAAATTTAAAGCTGCT               
rJMSF010E16-          TCCACAGCCCCTTCCGCATAATTAACAAAGAAATTTAAAGCTGCTGGAGTGAGAACATAA
rJMSF041A09-          TCCACAGCCCCTTCCGCATAATTAACAAAGAAATTTAAAGCTGCTGGAGTGAGAACATAA
JMSF041A09+           TCCACAGCCCCTTCCGCATAATTAACAAAGAAATTTAAAGCTGCTGGAGTGAGAACATAA
                      ____________________________________________________________
consensus             TCCACAGCCCCTTCCGCATAATTAACAAAGAAATTTAAAGCTGCTGGAGTGAGAACATAA
 
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rJMSF010E16-          TATGAGAAGACAATTCCGGCATAGAAAAGTACGGAGGATCCTAGGACAATTGGTGCGAGG
rJMSF041A09-          TATGAGAAGACAATTCCGGCATAGAAAAGTACGGAGGATCCTAGGACAATTGGTGCGAGG
JMSF041A09+           TATGAGAAGACAATTCCGGCATAGAAAAGTACGGAGGATCCTAGGACAATTGGTGCGAGG
JMSF047O05+                        TTCCGGCATAGAAAAGTACGGAGGATCCTAGGACAATTGGTGCGAGG
                      ____________________________________________________________
consensus             TATGAGAAGACAATTCCGGCATAGAAAAGTACGGAGGATCCTAGGACAATTGGTGCGAGG
 
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rJMSF010E16-          AATCTTCGTTCTGCCTTTGTTAAACCTGGAAGAACAAAGGCTATGATCTCATAGAGAATA
rJMSF041A09-          AATCTTCGTTCTGCCTTTGTTAAACCTGGAAGAACAAAGGCTATGATCTCATAGAGAATA
JMSF041A09+           AATCTTCGTTCTGCCTTTGTTAAACCTGGAAGAACAAAGGCTATGATCTCATAGAGAATA
JMSF047O05+           AATCTTCGTTCTGCCTTTGTTAAACCTGGAAGAACAAAGGCTATGATCTCATAGAGAATA
                      ____________________________________________________________
consensus             AATCTTCGTTCTGCCTTTGTTAAACCTGGAAGAACAAAGGCTATGATCTCATAGAGAATA
 
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rJMSF010E16-          ACGGGGCTTCCTAGAAGGAGGCCACAATATCCCGACACCTTTAGTGTTGTGAAGAAAAAT
rJMSF041A09-          ACGGGGCTTCCTAGAAGGAGGCCACAATATCCCGACACCTTTAGTGTTGTGAAGAAAAAT
JMSF041A09+           ACGGGGCTTCCTAGAAGGAGGCCACAATATCCCGACACCTTTAGTGTTGTGAAGAAAAAT
JMFF048O17+                                                                GAAAAAT
JMSF047O05+           ACGGGGCTTCCTAGAAGGAGGCCACAATATCCCGACACCTTTAGTGTTGTGAAGAAAAAT
                      ____________________________________________________________
consensus             ACGGGGCTTCCTAGAAGGAGGCCACAATATCCCGACACCTTTAGTGTTGTGAAGAAAAAT
 
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rJMSF010E16-          TCACC-GGGACCTAGTTGTAAAAACCGAACACCCTGTGCACTA                 
rJMSF041A09-          TCACCGGGGACCTAGTTGTAAAAACCGAACACCCTGTGCACTA                 
JMSF041A09+           TCACC-GGGACCTAGTTGTAAAAACCGAACACCCTGTGCACTAACGGGAGCTTCGAGAAA
JMFF048O17+           TCACC-GGGACCTAGTTGTAAAAACCGAACACCCTGTGCACTAACGGGAGCTTCGAGAAA
JMSF047O05+           TCACC-GGGACCTAGTTGTAAAAACCGAACACCCTGTGCACTAACGGGAGCTTCGAGAAA
                      ____________________________________________________________
consensus             TCACC-GGGACCTAGTTGTAAAAACCGAACACCCTGTGCACTAACGGGAGCTTCGAGAAA
 
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JMSF041A09+           CAATATAAGTTCCTTTGAGATAGCAAAACATCCCGCCATAGCACCACCAACAGCCAAGAC
JMFF048O17+           CAATATAAGTTCCTTTGAGATAGCAAAACATCCCGCCATAGCACCACCAACAGCCAAGTC
JMSF047O05+           CAATATAAGTTCCTTTGAGATAGCAAAACATCCCGCCATAGCACCACCAACAGCCAAGAC
                      ____________________________________________________________
consensus             CAATATAAGTTCCTTTGAGATAGCAAAACATCCCGCCATAGCACCACCAACAGCCAAGAC
 
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JMSF041A09+           TGAAACAATGAGTCTTTCCCGCAACTCCTCTAAATGGTCAAAAATACTCATTTCTTTATC
JMFF048O17+           TGAAACAATGAGTCTTTCCCGCAACTCCTCTAAATGGTCAAAATTACTCATTTCTTTATC
JMSF047O05+           TGAAACAATGAGTCTTTCCCGCAACTCCTCTAAATGGTCAAAAATACTCATTTCTTTATC
                      ____________________________________________________________
consensus             TGAAACAATGAGTCTTTCCCGCAACTCCTCTAAATGGTCAAAAATACTCATTTCTTTATC
 
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JMSF041A09+           ATCTGGGAGAAGCTCTTTACTGGGATAAAGCAAATTATAAATAGCACTCCCTTCCAGATC
JMFF048O17+           ATCTGGGAGAAGCTCTTTACTGGGATAAAGCAAATTATAAATAGCACTCCCTTCCAGATC
JMSF047O05+           ATCTGGGAGAAGCTCTTTACTGGGATAAAGCAAATTATAAATAGCACTCCCTTCCAGATC
                      ____________________________________________________________
consensus             ATCTGGGAGAAGCTCTTTACTGGGATAAAGCAAATTATAAATAGCACTCCCTTCCAGATC
 
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JMSF041A09+           TGGTTCATCATTCCGAAATATATTTTCTTCGGGGGCATCAAGCCTATCTTCAACAGCAGA
JMFF048O17+           TGGCTCATCATTCCGAAATATATTTTCTTCGGGGGCATCAAGCCTATCTTCAACAGCAGA
JMSF047O05+           TGGTTCATCATTCCGAAATATATTTTCTTCGGGGGCATCAAGCCTATCTTCAACAGCAGA
JMSF010E16+                                             GCATCAAGCCTATCTTCAACAGCAGA
                      ____________________________________________________________
consensus             TGGTTCATCATTCCGAAATATATTTTCTTCGGGGGCATCAAGCCTATCTTCAACAGCAGA
 
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JMSF041A09+           TTGTTGTTTCTCCGTGGCATCTTCAACAGCAGAGCAAACTAGGCTGCTGAATCTCCTTCT
JMFF048O17+           TTGTTGTTTCTCCGTGGCATCTTCAACAGCAGAGCAAACTAGGCTGCTGAATCTCCTTCT
JMSF047O05+           TTGTTGTTTCTCCGTGGCATCTTCAACAGCAGAGCAAACTAGGCTGCTGAATCTCCTTCT
JMSF010E16+           TTGTTGTTTCTCCGTGGCATCTTCAACAGCAGAGCAAACTAGGCTGCTGAATCTCCTTCT
                      ____________________________________________________________
consensus             TTGTTGTTTCTCCGTGGCATCTTCAACAGCAGAGCAAACTAGGCTGCTGAATCTCCTTCT
 
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JMSF041A09+           GCTTGGGAAAGCCAACCTGGGTTTTCTTTGGAACAGCTTCAAGCTAGCTCTTTGATTCGA
JMFF048O17+           GCTTGGGAAAGCCAACCTGGGTTTTCTTTGGAACAGCTTCAAGCTAGCTCTTTGATTCGA
JMSF047O05+           GCTTGGGAAAGCCAACCTGGGTTTTCTTTGGAACAGCTTCAAGCTAGCTCTTTGATTCGA
JMSF010E16+           GCTTGGGAAAGCCAACCTGGGTTTTCTTTGGAACAGCTTCAAGCTAGCTCTTTGATTCGA
                      ____________________________________________________________
consensus             GCTTGGGAAAGCCAACCTGGGTTTTCTTTGGAACAGCTTCAAGCTAGCTCTTTGATTCGA
 
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JMSF041A09+           TAATTTTGAATTTAGGCATTTGAAACAGCGAGGGTTGTTGAGATTGAGATTGGGGATTAT
JMFF048O17+           TAATTTTGAATTTAGGCATTTGAAACAGCGAGGGTTGTTGAGATTGAGATTGGGGATTAT
JMSF047O05+           TAATTTTGAATTTAGGCATTTGAAACAGCGAGGGTTGTTGAGATTGAGATTGGGGATTAT
JMSF010E16+           TAATTTTGAATTTAGGCATTTGAAACAGCGAGGGTTGTTGAGATTGAGATTGGGGATTAT
                      ____________________________________________________________
consensus             TAATTTTGAATTTAGGCATTTGAAACAGCGAGGGTTGTTGAGATTGAGATTGGGGATTAT
 
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JMSF041A09+           AGCGCTCGAGCTTCCCATCTCTCTGGGTATGCAAGAAAATGGGCAAAAACTCTACTG   
JMFF048O17+           AGCGCTCGAGCTTCCCATCTCTCTGGGTATGCAAGAAAATGGGCAAAAACTCTACTG   
JMSF047O05+           AGCGCTCGAGCTTCCCATCTCTCTGGGTATGCAAGAAAATGGGCAAAAACTCTACTG   
JMSF010E16+           AGCGCTCGAGCTTCCCATCTCTCTGGGTATGCAAGAAAATGGGCAAAAACTCTACTGATC
                      ____________________________________________________________
consensus             AGCGCTCGAGCTTCCCATCTCTCTGGGTATGCAAGAAAATGGGCAAAAACTCTACTGATC