Contig 002094:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS141E05Sequence608002094 (4)ref|XP_007215123.1|1e-80hypothetical protein PRUPE_ppa004338mg [Prunus persica] gb|EMJ16322.1| hypotheti
JMSF007D21Sequence355002094 (4)727005693 (3)ref|XP_010088373.1|4e-26Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isofor
JMSF010E21Sequence294002094 (4)710005693 (3)ref|XP_010088373.1|5e-42Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isofor
JMSF025A13Sequence651002094 (4)ref|XP_011072480.1|7e-45PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B 703005693 (3)ref|XP_002534125.1|2e-09protein phosphatase pp2a regulatory subunit B, putative [Ricinus communis] gb|E

Alignment

This contig is upended


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JMFS141E05+                                                    TGTTTTATCATTAGTGGAC
                      ____________________________________________________________
consensus                                                      TGTTTTATCATTAGTGGAC
 
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JMFS141E05+           AGAACGAAGAGCGCACCATTAGCTGTCTGGCACCACCGTATCTTGTTTATTTTCTCCTCA
                      ____________________________________________________________
consensus             AGAACGAAGAGCGCACCATTAGCTGTCTGGCACCACCGTATCTTGTTTATTTTCTCCTCA
 
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JMFS141E05+           ATCTCCAAACTCTTGAGATAATCAAACTCAGGTTCATGGCTTTGAAATTCTGTCTTGTAC
JMSF025A13+                                                                    TAC
                      ____________________________________________________________
consensus             ATCTCCAAACTCTTGAGATAATCAAACTCAGGTTCATGGCTTTGAAATTCTGTCTTGTAC
 
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JMFS141E05+           CGGAACTCTGGATGCCGACTAACAGGATAGTCTGTCCTCTCCAACTCTCTTCGACTTCCA
JMSF025A13+           CGGAACTCTGGATGCCGACTAACTGGATAGTCCATCCGCTCCAATTCTCTTCGGCTTCCA
                      ____________________________________________________________
consensus             CGGAACTCTGGATGCCGACTAACTGGATAGTCTGTCCTCTCCAATTCTCTTCGGCTTCCA
 
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JMFS141E05+           ACAAGCTCCTTTGTATCAGTCCTTTCAAATAATACCACTCTACCCCCACGGTCACCAGTA
JMSF025A13+           GCATGCTCTTTAGTATCAGTCCTTTCAAATAATACAACCCTACCCCCACGATCTCCAGTA
                      ____________________________________________________________
consensus             GCATGCTCTTTTGTATCAGTCCTTTCAAATAATACCACTCTACCCCCACGGTCTCCAGTA
 
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JMFS141E05+           GCAAGATGGTCGCCAGTTTTATCAAACTCAATGGCAGAAATGATATCAACTTCCTGAACT
JMSF025A13+           GCAAGATGGTCACCAGTTTTATCAAACTCAATTGCTGAGATGATATCAACTTCCTGAACT
                      ____________________________________________________________
consensus             GCAAGATGGTCGCCAGTTTTATCAAACTCAATTGCTGAGATGATATCAACTTCCTGAACT
 
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JMFS141E05+           TCCTCGCCTGCCGTACGTTCACCAAACACCTGAGAAAATTTCCACTC             
JMSF025A13+           TCTTCTCCGGCCGCACGCTCACCAAATACCTGAGAGAATTTCCACTCAAGATGCTGTGGC
                      ____________________________________________________________
consensus             TCTTCTCCTGCCGTACGTTCACCAAATACCTGAGAGAATTTCCACTCAAGATGCTGTGGC
 
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JMSF010E21+                              CGCCCCCGCCACCATCACCACCGCTGAACATCTTTTTTCTG
JMSF025A13+           GGGCCCGCGACGTTTCCTCCGCCCCCGCCACCATCACCACCGCTGAACATCTTTTTTCTG
                      ____________________________________________________________
consensus             GGGCCCGCGACGTTTCCTCCGCCCCCGCCACCATCACCACCGCTGAACATCTTTTTTCTG
 
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JMSF010E21+           CTCCCTCAGAATCACCAGCCGAGCAAAGCACCAACGCGAAATCGAAATCGGAGGGGAAAA
JMSF025A13+           CTCCCTCAGAATCACCAGCCGAGCAAAGCACCAACGCGAAATCGAAATCGGAGGGGAAAA
JMSF007D21+                TCAGAATCACCAGCCGAGCAAAGCACCAACGCGAAATCGAAATCGGAGGGGAAAA
                      ____________________________________________________________
consensus             CTCCCTCAGAATCACCAGCCGAGCAAAGCACCAACGCGAAATCGAAATCGGAGGGGAAAA
 
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JMSF010E21+           ACTCGAATCGGACAAAGAATGCGAAAACTAATCACACGCAGCTCTCACTTCATCGGGGAA
JMSF025A13+           ACTCGAATCGGACAAAGAATGCGAAAACTAATCACACGCAGCTCTCACTTCATCGGGGAA
JMSF007D21+           ACTCGAATCGGACAAAGAATGCGAAAACTAATCACACGCAGCTCTCACTTCATCGGGGAA
                      ____________________________________________________________
consensus             ACTCGAATCGGACAAAGAATGCGAAAACTAATCACACGCAGCTCTCACTTCATCGGGGAA
 
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JMSF010E21+           CAAAAACGATCGGCCTTGTAGCTGAAACCTTGGTGAAAAATAATGTCGGATTCAGATTCA
JMSF025A13+           CAAAAACGATCGGCCTTGTAGCTGAAACCTTGGTGAAAAATAATGTCGGATTCAGATTCA
JMSF007D21+           CAAAAACGATCGGCCTTGTAGCTGAAACCTTGGTGAAAAATAATGTCGGATTCAGATTCA
                      ____________________________________________________________
consensus             CAAAAACGATCGGCCTTGTAGCTGAAACCTTGGTGAAAAATAATGTCGGATTCAGATTCA
 
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JMSF010E21+           GCCATTACAAGTGCAAACATCAACAACGCCACATGGCCTTCAACGCAGATTGCGATTTTC
JMSF025A13+           GCCATTACAAGTGCAAACATCAACAACGCCACATGGCCTTCAACGCAGATTGCGATTTTC
JMSF007D21+           GCCATTACAAGTGCAAACATCAACAACGCCACATGGCCTTCAACGCAGATTGCGATTTTC
                      ____________________________________________________________
consensus             GCCATTACAAGTGCAAACATCAACAACGCCACATGGCCTTCAACGCAGATTGCGATTTTC
 
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JMSF010E21+           TCTTCCTTTTTC                                                
JMSF025A13+           TCTTCCTTTTTCACTTTCTCTCTCTAGAGTCGAGTCGAAGATGGGTTCGGGGCGAGGAGA
JMSF007D21+           TCTTCCTTTTTCACTTTCTCTCTCTAGAGTCGAGTCGAAGATGGGTTCGGGGCGAGGAGA
                      ____________________________________________________________
consensus             TCTTCCTTTTTCACTTTCTCTCTCTAGAGTCGAGTCGAAGATGGGTTCGGGGCGAGGAGA
 
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JMSF025A13+           AAATTGGAATTTCGGAGTGGCGAAGCAAATTAGCAAACCGCAGCGTTC            
JMSF007D21+           AAATTGGAATTTCGGAGTGGCGAAGCAAATTAGCAAACCGCAGCGTTCTCCTTCCGTCTC
                      ____________________________________________________________
consensus             AAATTGGAATTTCGGAGTGGCGAAGCAAATTAGCAAACCGCAGCGTTCTCCTTCCGTCTC