Contig 002075:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008P08Sequence534002075 (8)gb|ACF17669.1|5e-39putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum]756004303 (4)gb|ACF17669.1|1e-71putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum]
JMFF011M04Sequence599002075 (8)gb|ACF17669.1|3e-54putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum]708004303 (4)ref|XP_009793937.1|3e-55PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-l
JMFF017E11Sequence532002075 (8)gb|ACF17669.1|1e-39putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum]
JMFF047I24Sequence424002075 (8)gb|ACF17669.1|7e-15putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum]388004303 (4)ref|XP_011101308.1|1e-32PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [
JMFN020G16Sequence605002075 (8)gb|ACF17669.1|1e-58putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum]
JMSF004M24Sequence360002075 (8)gb|ACF17669.1|1e-04putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum]
JMSF004N18Sequence311002075 (8)
JMSF032F06Sequence693002075 (8)gb|ACF17669.1|6e-78putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum]762004303 (4)gb|KJB49643.1|1e-44hypothetical protein B456_008G131200 [Gossypium raimondii]

Alignment

This contig is upended


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JMSF032F06+                                                           CATTGTGCTCTT
                      ____________________________________________________________
consensus                                                             CATTGTGCTCTT
 
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JMFN020G16+                                                                      A
JMSF032F06+           TAGAAAACATGTGCATAGAGCCACCCTGACNTCTGCAACAACCCGTGGTCTTACCAAAGA
                      ____________________________________________________________
consensus             TAGAAAACATGTGCATAGAGCCACCCTGACNTCTGCAACAACCCGTGGTCTTACCAAAGA
 
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JMFN020G16+           GTTCACTCATCACTTCACGAGCTGACACACCCTTGCTCAATGCATGGACATGATCACGGT
JMFF011M04+                                CTGACACACCCTTGCTCAATGCATGGACATGATCACGGT
JMSF032F06+           GTTCACTCATCACTTCACGAGCTGACACACCCTTGCTCAATGCATGGACATGATCACGGT
                      ____________________________________________________________
consensus             GTTCACTCATCACTTCACGAGCTGACACACCCTTGCTCAATGCATGGACATGATCACGGT
 
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JMFN020G16+           AAGTGCTAACCACAGTGTCTTCCTTCTTCAGGAGTTTGATGAAGCCAGTAGAAACTGCTT
JMFF017E11+                                  TTCTTCAGGAGTTTGATGAAGCCAGTAGAAACTGCTT
JMFF011M04+           AAGTGCTAACCACAGTGTCTTCCTTCTTCAGGAGTTTGATGAAGCCAGTAGAAACTGCTT
JMFF008P08+                                     TTCAGGAGTTTGATGAAGCCAGTAGAAACTGCTT
JMSF032F06+           AAGTGCTAACCACAGTGTCTTCCTTCTTCAGGAGTTTGATGAAGCCAGTAGAAACTGCTT
                      ____________________________________________________________
consensus             AAGTGCTAACCACAGTGTCTTCCTTCTTCAGGAGTTTGATGAAGCCAGTAGAAACTGCTT
 
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JMFN020G16+           CCTGGCCATTGTACAAGTGCACAAAACCAAACATTTTGCCTCTGTAGTACATCTGGGCAC
JMFF017E11+           CCTGGCCATTGTACAAGTGCACAAAACCAAACATTTTGCCTCTGTAGTACATCTGGGCAC
JMFF011M04+           CCTGGCCATTGTACAAGTGCACAAAACCAAACATTTTGCCTCTGTAGTACATCTGGGCAC
JMFF008P08+           CCTGGCCATTGTACAAGTGCACAAAACCAAACATTTTGCCTCTGTAGTACATCTGGGCAC
JMSF032F06+           CCTGGCCATTGTACAAGTGCACAAAACCAAACATTTTGCCTCTGTAGTACATCTGGGCAC
                      ____________________________________________________________
consensus             CCTGGCCATTGTACAAGTGCACAAAACCAAACATTTTGCCTCTGTAGTACATCTGGGCAC
 
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JMFN020G16+           ACATATCCTCAAATGCCCTCCCCAGAATCATATCTTCGTACAACACCAAACCTTCCTGCT
JMFF047I24+                      AATGCCCTCCCCAGAATCATATCTTCGTACAACACCAAACCTTCCTGCT
JMFF017E11+           ACATATCCTCAAATGCCCTCCCCAGAATCATATCTTCGTACAACACCAAACCTTCCTGCT
JMFF011M04+           ACATATCCTCAAATGCCCTCCCCAGAATCATATCTTCGTACAACACCAAACCTTCCTGCT
JMFF008P08+           ACATATCCTCAAATGCCCTCCCCAGAATCATATCTTCGTACAACACCAAACCTTCCTGCT
JMSF032F06+           ACATATCCTCAAATGCCCTCCCCAGAATCATATCTTCGTACAACACCAAACCTTCCTGCT
                      ____________________________________________________________
consensus             ACATATCCTCAAATGCCCTCCCCAGAATCATATCTTCGTACAACACCAAACCTTCCTGCT
 
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JMFN020G16+           TGGTAATTAGCAGATTGGAGGCAGAGGAGGCAGATTTGAGCTTGTTTTCCTTGACAACAT
JMFF047I24+           GNGTAATTAGCAGATGNGAGGCAGAGGAGGCAGATTTGAGCTTGTTTTCCTTGACAACAT
JMFF017E11+           TGGTAATTAGCAGATTGGAGGCAGAGGAGGCAGATTTGAGCTTGTTTTCCTTGACAACAT
JMFF011M04+           TGGTAATTAGCAGATTGGAGGCAGAGGAGGCAGATTTGAGCTTGTTTTCCTTGACAACAT
JMFF008P08+           TGGTAATTAGCAGATTGGAGGCAGAGGAGGCAGATTTGAGCTTGTTTTCCTTGACAACAT
JMSF004M24+                           GGAGGCAGAGGAGGCAGATTTGAGCTTGTTTTCCTTGACAACAT
JMSF032F06+           TGGTAATTAGCAGATTGGAGGCAGAGGAGGCAGATTTGAGCTTGTTTTCCTTGACAACAT
                      ____________________________________________________________
consensus             TGGTAATTAGCAGATTGGAGGCAGAGGAGGCAGATTTGAGCTTGTTTTCCTTGACAACAT
 
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JMFN020G16+           CGGAGACGGCGAGGATACGGGTGGATCTGCGGTGAGAGTGAGGAGATGCAGAGAAGTTGT
JMFF047I24+           CGGAGACGGCGAGGATACGGGTGGATCTGCGGTGAGAGTGAGGAGATGCAGAGAAGTTGT
JMFF017E11+           CGGAGACGGCGAGGATACGGGTGGATCTGCGGTGAGAGTGAGGAGATGCAGAGAAGTTGT
JMFF011M04+           CGGAGACGGCGAGGATACGGGTGGATCTGCGGTGAGAGTGAGGAGATGCAGAGAAGTTGT
JMFF008P08+           CGGAGACGGCGAGGATACGGGTGGATCTGCGGTGAGAGTGAGGAGATGCAGAGAAGTTGT
JMSF004M24+           CGGAGACGGCGAGGATACGGGTGGATCTGCGGTGAGAGTGAGGAGATGCAGAGAAGTTGT
JMSF032F06+           CGGAGACGGCGAGGATACGGGTGGATCTGCGGTGAGAGTGAGGAGATGCAGAGAAGTTGT
                      ____________________________________________________________
consensus             CGGAGACGGCGAGGATACGGGTGGATCTGCGGTGAGAGTGAGGAGATGCAGAGAAGTTGT
 
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JMFN020G16+           TGATGAGGGGAAGCTTGTGGGAAGATGAGCCTCCGAGAAAGGAGGAGGCGGAGAAGAGGG
JMFF047I24+           TGATGAGGGGAAGCTTGTGGGAAGATGAGCCTCCGAGAAAGGAGGAGGCGGAGAAGAGGG
JMFF017E11+           TGATGAGGGGAAGCTTGTGGGAAGATGAGCCTCCGAGAAAGGAGGAGGCGGAGAAGAGGG
JMFF011M04+           TGATGAGGGGAAGCTTGTGGGAAGATGAGCCTCCGAGAAAGGAGGAGGCGGAGAAGAGGG
JMFF008P08+           TGATGAGGGGAAGCTTGTGGGAAGATGAGCCTCCGAGAAAGGAGGAGGCGGAGAAGAGGG
JMSF004M24+           TGATGAGGGGAAGCTTGTGGGAAGATGAGCCTCCGAGAAAGGAGGAGGCGGAGAAGAGGG
JMSF032F06+           TGATGAGGGGAAGCTTGTGGGAAGATGAGCCTCCGAGAAAGGAGGAGGCGGAGAAGAGGG
JMSF004N18+                                                            GGAGAAGAGGG
                      ____________________________________________________________
consensus             TGATGAGGGGAAGCTTGTGGGAAGATGAGCCTCCGAGAAAGGAGGAGGCGGAGAAGAGGG
 
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JMFN020G16+           GTTTTTCAGCAGATCTGGTGGAGTGGAGGGGCATAGAAGAAGGAGTGTGCACCAATTTGG
JMFF047I24+           GTTTTTCAGCAGATCTGGTGGAGTGGAGGGGCATAGAAGAAGGAGTGTGCACCAATTTGG
JMFF017E11+           GTTTTTCAGCAGATCTGGTGGAGTGGAGGGGCATAGAAGAAGGAGTGTGCACCAATTTGG
JMFF011M04+           GTTTTTCAGCAGATCTGGTGGAGTGGAGGGGCATAGAAGAAGGAGTGTGCACCAATTTGG
JMFF008P08+           GTTTTTCAGCAGATCTGGTGGAGTGGAGGGGCATAGAAGAAGGAGTGTGCACCAATTTGG
JMSF004M24+           GTTTTTCAGCAGATCTGGTGGAGTGGAGGGGCATAGAAGAAGGAGTGTGCACCAATTTGG
JMSF032F06+           GTTTTTCAGCAGATCTGGTGGAGTGGAGGGGCATAGAAGAAGGAGTGTGCACCAATTTGG
JMSF004N18+           GTTTTTCAGCAGATCTGGTGGAGTGGAGGGGCATAGAAGAAGGAGTGTGCACCAATTTGG
                      ____________________________________________________________
consensus             GTTTTTCAGCAGATCTGGTGGAGTGGAGGGGCATAGAAGAAGGAGTGTGCACCAATTTGG
 
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JMFN020G16+           CCAAAGAGAAAGACGAAGCCATTGCACTTGATCTTCGTCTTCGTCTTCGTCTTCGTCTTC
JMFF047I24+           CCAAAGAGAAAGACGAAGCCATTGCACTTGATCTTCGTCTTCGTCTTCGTCTTCGTCTTC
JMFF017E11+           CCAAAGAGAAAGACGAAGCCATTGCACTTGATCTTCGTCTTCGTCTTCGTCTTCGTCTTC
JMFF011M04+           CCAAAGAGAAAGACGAAGCCATTGCACTTGATCTTCGTCTTCGTCTTCGTCTTCGTCTTC
JMFF008P08+           CCAAAGAGAAAGACGAAGCCATTGCACTTGATCTTCGTCTTCGTCTTCGTCTTCGTCTTC
JMSF004M24+           CCAAAGAGAAAGACGAAGCCATTGCACTTGATCTTCGTCTTCGTCTTCGTCTTCGTCTTC
JMSF032F06+           CCAAAGAGAAAGACGAAGCCATTGCACTTGATCTTCGTCTTCGTCTTCGTCTTCGTCTTC
JMSF004N18+           CCAAAGAGAAAGACGAAGCCATTGCACTTGATCTTCGTCTTCGTCTTCGTCTTCGTCTTC
                      ____________________________________________________________
consensus             CCAAAGAGAAAGACGAAGCCATTGCACTTGATCTTCGTCTTCGTCTTCGTCTTCGTCTTC
 
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JMFN020G16+           GTCTTCAAGGGCAATAGAATACAACAGCACAGTACAGCAGCCGAAGCTGTAGAAGACAGA
JMFF047I24+           GTCTTCAAGGGCAATAGAATACAACAGCACAGTACAGCAGCCGAAGCTGTAGAAGACAGA
JMFF017E11+           GTCTTCAAGGGCAATAGAATACAACAGCACAGTACAGCAGCCGAAGCTGTAGAAGACAGA
JMFF011M04+           GTCTTCAAGGGCAATAGAATACAACAGCACAGTACAGCAGCCGAAGCTGTAGAAGACAGA
JMFF008P08+           GTCTTCAAGGGCAACAGAATACAACAGCACAGTACAGCAGCCGAAGCTGTAGAAGACAGA
JMSF004M24+           GTCTTCAAGGGCAATAGAATACAACAGCACAGTACAGCAGCCGAAGCTGTAGAAGACAGA
JMSF032F06+           GTCTTCAAGGGCAATAGAATACAACAGCACAGTACAGCAGCCGAAGCTGTAGAAGACAGA
JMSF004N18+           GTCTTCAAGGGCAATAGAATACAACAGCACAGTACAGCAGCCGAAGCTGTAGAAGACAGA
                      ____________________________________________________________
consensus             GTCTTCAAGGGCAATAGAATACAACAGCACAGTACAGCAGCCGAAGCTGTAGAAGACAGA
 
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JMFN020G16+           GAAA                                                        
JMFF047I24+           GAAAGAGAG                                                   
JMFF017E11+           GAAAGAGAGTGAAAC                                             
JMFF011M04+           GAAAGAGAGTGAAACAGAT                                         
JMFF008P08+           GAAAGAGAGTGAAAC                                             
JMSF004M24+           GAAAGAGAGTGAAAC                                             
JMSF032F06+           GAAAGAGAGTGAAACAGAT                                         
JMSF004N18+           GAAAGAGAGTGAAACAGATTGAAGAGAGAAAAGTGGAAATGGAAGAATATAAAGGAGCGG
                      ____________________________________________________________
consensus             GAAAGAGAGTGAAACAGATTGAAGAGAGAAAAGTGGAAATGGAAGAATATAAAGGAGCGG
 
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JMSF004N18+           AAAAAGGGAAGAGTTAGGAGAGGAAGCGGAGAAAACGAAGAAACACTCTGGGAATAACCC
                      ____________________________________________________________
consensus             AAAAAGGGAAGAGTTAGGAGAGGAAGCGGAGAAAACGAAGAAACACTCTGGGAATAACCC