Contig 002073:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019A23Sequence415002073 (11)735011044 (10)ref|XP_009603377.1|8e-65PREDICTED: protein UPSTREAM OF FLC isoform X1 [Nicotiana tomentosiformis] ref|XP
JMFF019O04Sequence589002073 (11)ref|XP_009603382.1|2e-44PREDICTED: protein UPSTREAM OF FLC isoform X3 [Nicotiana tomentosiformis]759011044 (10)emb|CBI17136.3|1e-52unnamed protein product [Vitis vinifera]
JMSF004I04Sequence281002073 (11)268011044 (10)
JMSF006E05Sequence423007758 (6)ref|XP_006347139.1|5e-16PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochond406002073 (11)
JMSF011A24Sequence249002073 (11)766011044 (10)emb|CBI17136.3|7e-60unnamed protein product [Vitis vinifera]
JMSF020G23Sequence621002073 (11)ref|XP_009603377.1|4e-34PREDICTED: protein UPSTREAM OF FLC isoform X1 [Nicotiana tomentosiformis] ref|XP780011044 (10)ref|XP_009603377.1|8e-87PREDICTED: protein UPSTREAM OF FLC isoform X1 [Nicotiana tomentosiformis] ref|XP
JMSF030F05Sequence459002073 (11)747011044 (10)emb|CBI17136.3|2e-54unnamed protein product [Vitis vinifera]
JMSF042F21Sequence786002073 (11)ref|XP_009603382.1|2e-85PREDICTED: protein UPSTREAM OF FLC isoform X3 [Nicotiana tomentosiformis]789011044 (10)ref|XP_009603377.1|3e-66PREDICTED: protein UPSTREAM OF FLC isoform X1 [Nicotiana tomentosiformis] ref|XP
JMSF044F20Sequence759002073 (11)ref|XP_009603382.1|6e-22PREDICTED: protein UPSTREAM OF FLC isoform X3 [Nicotiana tomentosiformis]745011044 (10)emb|CBI17136.3|1e-43unnamed protein product [Vitis vinifera]
JMSF048L23Sequence619002073 (11)661011044 (10)ref|XP_009603377.1|9e-65PREDICTED: protein UPSTREAM OF FLC isoform X1 [Nicotiana tomentosiformis] ref|XP
JMSF049M08Sequence685002073 (11)ref|XP_009603382.1|4e-18PREDICTED: protein UPSTREAM OF FLC isoform X3 [Nicotiana tomentosiformis]699011044 (10)ref|XP_009603377.1|6e-66PREDICTED: protein UPSTREAM OF FLC isoform X1 [Nicotiana tomentosiformis] ref|XP

Alignment

This contig is upended


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JMSF042F21+                                                 TGGCTTGTAGCAGATGGCGGTT
                      ____________________________________________________________
consensus                                                   TGGCTTGTAGCAGATGGCGGTT
 
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JMSF042F21+           CGGGTAGCAGTTTTGGGTTTTGAAATCTAACGTTTCTTCCAGGGCTGAAGCTCCCTAAAT
                      ____________________________________________________________
consensus             CGGGTAGCAGTTTTGGGTTTTGAAATCTAACGTTTCTTCCAGGGCTGAAGCTCCCTAAAT
 
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JMSF042F21+           TAGATTCTTCCAAGAGTTCTGAACCCTTGAGAACATATTCATTACCATGAGCAGGAAGAA
                      ____________________________________________________________
consensus             TAGATTCTTCCAAGAGTTCTGAACCCTTGAGAACATATTCATTACCATGAGCAGGAAGAA
 
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JMFF019O04+                                                                 TGCAAG
rJMSF006E05-                                                           CCTCTTGCANG
JMSF042F21+           TGAGATCATCTTCAGAAAGATCATGCCAAACAAACCCATTCTTATAGCTCCTCTTGCAAG
                      ____________________________________________________________
consensus             TGAGATCATCTTCAGAAAGATCATGCCAAACAAACCCATTCTTATAGCTCCTCTTGCAAG
 
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JMFF019O04+           ACCAAGAGTACATTGAAGCCATGCCTCTGCCCCTCAAAACATTAAGCCTCTCAATTACAT
rJMSF006E05-          ACCAAGAGTACATTGAAGCCATGCCTCTGCCCCTCAAAA                     
JMSF042F21+           ACCAAGAGTACATTGAAGCCATGCCTCTGCCCCTCAAAACATTAAGCCTCTCAATTACAT
JMSF020G23+                      ATTGAAGCCATGCCTNTGCCCCTCAAAACATTAAGCCTCTCAATTACAT
                      ____________________________________________________________
consensus             ACCAAGAGTACATTGAAGCCATGCCTCTGCCCCTCAAAACATTAAGCCTCTCAATTACAT
 
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JMFF019O04+           CTCTCAAGTAGAGGCCATCTGGGGAAGAAAGAGGGACTTCAATGAAATGGGGATGCTCAA
JMSF042F21+           CTCTCAAGTAGAGGCCATCTGGGGAAGAAAGAGGGACTTCAATGAAATGGGGATGCTCAA
JMSF020G23+           CTCTCAAGTAGAGGCCATCTGGGGAAGAAAGAGGGACTTCAATGAAATGGGGATGCTCAA
JMSF049M08+                                              ACTTCAATGAAATGGGGATGCTCAA
JMSF044F20+                               GGGGAAGAAAGAGGGACTTCAATGAAATGGGGATGCTCAA
                      ____________________________________________________________
consensus             CTCTCAAGTAGAGGCCATCTGGGGAAGAAAGAGGGACTTCAATGAAATGGGGATGCTCAA
 
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JMFF019O04+           GCTGCCGATTTCTACAAAGATAATACACCACAGCAACTCTGTTATTATTACTACTTTCCT
JMSF042F21+           GCTGCCGATTTCTACAAAGATAATACACCACAGCAACTCTGTTATTATTACTACTTTCCT
JMSF020G23+           GCTGCCGATTTNTACAAAGATAATACNCCNCAGCAACTCTGTTATTATTACTACTTTCCT
JMSF049M08+           GCTGCCGATTTCTACAAAGATAATACNCCNCAGCAACTCTGTTATTATTACTACTTTCCT
JMSF044F20+           GCTGCCGATTTCTACAAAGATAATACACCACAGCAACTCTGTTATTATTACTACTTTCCT
                      ____________________________________________________________
consensus             GCTGCCGATTTCTACAAAGATAATACACCACAGCAACTCTGTTATTATTACTACTTTCCT
 
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JMFF019O04+           GCTCCTTCCGGGGCTGCTGTTTCTGCCGATATTTTGGAGATTTCTCCGTCCAAACTTTGG
JMSF042F21+           GCTCCTTCCGGGGCTGCTGTTTCTGCCGATATTTTGGAGATTTCTCCGTCCAAACTTTGG
JMSF020G23+           GCTCCTTCCGGGGNTGCTGTTTCTGCCGATATTTTGGAGATTTNTCCGTCCAAACTTTGG
JMSF049M08+           GCTCCTTCCGGGGCTGCTGTTTCTGCCGATATTTTGGAGATTTCTCCGTCCAAACTTTGG
JMSF044F20+           GCTCCTTCCGGGGCTGCTGTTTCTGCCGATATTTTGGAGATTTCTCCGTCCAAACTTTGG
JMSF048L23+                                                     TCTCCGTCCAAACTTTGG
                      ____________________________________________________________
consensus             GCTCCTTCCGGGGCTGCTGTTTCTGCCGATATTTTGGAGATTTCTCCGTCCAAACTTTGG
 
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JMFF019O04+           CTCTCTCCGGGCTCAAAGGACGGTACTTTTTCATCCGCCCCTCCATCCCAAACCCTAACT
JMSF042F21+           CTCTCTCCGGGCTCAAAGGACGGTACTTTTTCATCCGCCCCTCCATCCCAAACCCTAACT
JMSF020G23+           CTCTNTCCGGGCTCAAAGGACGGTACTTTTTCATCCGCCCCTCCATCCCAAACCCTAACT
JMSF049M08+           CTCTCTCCGGGCTCAAAGGACGGTACTTTTTCATCCGCCCCTCCATCCCAAACCCTAACT
JMSF044F20+           CTCTNTCCGGGCTCAAAGGACGGTACTTTTTCATCCGCCCCTCCATCCCAAACCCTAACT
JMSF048L23+           CTCTCTCCGGGCTCAAAGGACGGTACTTTTTCATCCGCCCCTCCATCCCAAACCCTAACT
                      ____________________________________________________________
consensus             CTCTCTCCGGGCTCAAAGGACGGTACTTTTTCATCCGCCCCTCCATCCCAAACCCTAACT
 
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JMFF019O04+           CAAAAATACTCCCGCTCCGATCTTCACAGAAAGCTCGCTCTTAAACAAGCAATTCATACG
JMSF042F21+           CAAAAATACTCCCGCTCCGATCTTCACAGAAAGCTCGCTCTTAAACAAGCAATTCATACG
JMSF020G23+           CAAAAATACTCCCGCTCCGATNTTCACAGAAAGCTCGCTNTTAAACAAGCAATTCATACG
JMSF049M08+           CAAAAATACTCCCGCTCCGATNTTCACAGAAAGCTCGCTNTTAAACAAGCAATTCATACG
JMSF030F05+                                     CAGAAAGCTCGCTTTTAAACNAGCAATTCATACG
JMSF044F20+           CAAAAATACTCCCGCTCCGATNTTCACAGAAAGCTCGCTNTTAAACAAGCAATTCATACG
JMSF048L23+           CAAAAATACTCCCGCTCCGATNTTCACAGAAAGCTCGCTNTTAAACAAGCAATTCATACG
                      ____________________________________________________________
consensus             CAAAAATACTCCCGCTCCGATCTTCACAGAAAGCTCGCTCTTAAACAAGCAATTCATACG
 
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JMFF019O04+           GCTTCTGAATCACTGATTGTGAGGATAGATACAATAGATCTGGGATTGAGCTAGAATCGC
JMSF042F21+           GCTTCTGAATCACTGATTGTGAGGATAGATACAATAGATCTGGGATTGAGCTAGAATCGC
JMSF020G23+           GNTTTTGAATCACTGATTGTGAGGATAGATACAATAGGTNTGGGATTGAGCTAGAATCGC
JMSF049M08+           GCTTNTGAATCACTGATTGTGAGGATAGATACAATAGATCTGGGATTGAGCTAGAATCGC
JMFF019A23+                       CTGATTGTGAGGATAGATACAATAGATNTGGGATTGAGCTAGAATCGC
JMSF030F05+           GNTTTTGAATCNCTGATTGTGNGGATAGATACNATAGATNTGGGATTGAGCTAGAATCNC
JMSF044F20+           GCTTTTGAATCACTGATTGTGAGGATAGATACAATAGATNTGGGATTGAGCTAGAATCGC
JMSF048L23+           GCTTTTGAATCACTGATTGTGAGGATAGATACAATAGATCTGGGATTGAGCTAGAATCGC
                      ____________________________________________________________
consensus             GCTTTTGAATCACTGATTGTGAGGATAGATACAATAGATCTGGGATTGAGCTAGAATCGC
 
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JMFF019O04+           CACGAAATCAAAGTATAATCGCAAAGATCAACAGTCCATGCACCGCAGCAGCTCAGTCCA
JMSF042F21+           CACGAAATCAAAGTATAATCGCAAAGATCAACAGTCCATGCACCGCAGCAGCTCAGTCCA
JMSF020G23+           CNCGAAATCAAAGTATAATCGCAAAGATCAACAGTCCATGCACCGCAGCAGCTCAGTCCA
JMSF049M08+           CNCGAAATCAAAGTATAATCGCAAAGATCAACAGTCCATGCACCGCAGCAGCTCAGTCCA
JMFF019A23+           CNCGAAATCAAAGTATAATCGCAAAGATCAACAGTCCATGCNCCGCAGCAGCTCAGTCCA
JMSF030F05+           CCCGAAATCAAAGTATAATNGCAAAGATCAACNGTCCNTGCNCCGCAGCAGCTCAGTCCN
JMSF044F20+           CNCGAAATCAAAGTATAATCGCAAAGATCAACAGTCCATGCACCGCAGCAGCTCAGTCCA
JMSF048L23+           CNCGAAATCAAAGTATAATCGCAAAGATCAACAGTCCATGCACCGCAGCAGCTCAGTCCA
                      ____________________________________________________________
consensus             CACGAAATCAAAGTATAATCGCAAAGATCAACAGTCCATGCACCGCAGCAGCTCAGTCCA
 
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JMFF019O04+           TGAAGACGCCAAACTTCTTCGCTTTTTCCTCTTCTGGGT                     
JMSF042F21+           TGAAGACGCCAAACTTCTTCGCTTTTTCCTCTTCTGGGT                     
JMSF020G23+           TGAAGACGCCAAACTTNTTCGCTTTTTCCTNTTCTGGGT                     
JMSF049M08+           TGAAGACGCCAAACTTNTTCGCTTTTTCCTNTTCTGGGTNTGATGGGTAACATTGAACAC
JMFF019A23+           TGAAGACGCCAAACTTNTCCGCTTTTTCCTNTTNTGGGTNTGATGGGTAACATTGAACNC
JMSF030F05+           TGAAGACGCCAAANTTTTTCGCTTTTTCCTTTTNTGGGTTTGATGGGTAACNTTGAACNC
JMSF044F20+           TGAAGACGCCAAACTTNTTCGCTTTTTCCTNTTCTGGGTNTGATGGGTAACATTGAACAC
JMSF048L23+           TGAAGACGCCAAACTTNTTCGCTTTTTCCTNTTCTGGGTNTGATGGGTAACATTGAACAC
                      ____________________________________________________________
consensus             TGAAGACGCCAAACTTCTTCGCTTTTTCCTCTTCTGGGTTTGATGGGTAACATTGAACAC
 
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JMSF049M08+           CCNCNTTCAATAAAATGC-AAAAAAAAAACGGTGGGGAGCTCAGCAATGGCGGCGAAGCG
JMFF019A23+           CCNCATTCAATAAAATGC-AAAAAAAAAACGGTGGGGAGCTCAGCAATGGCGGCGAAGCG
JMSF030F05+           CCNCCTTCAATAAAATGCAAAAAAAAAAACGGTGGGGAGCTCAGCAATGGCGGCGAAGCG
JMSF011A24+                TTCAATAAAATGC-AAAAAAAAAACGGTGGGGAGCTCAGCAATGGCGGCGAAGCG
JMSF044F20+           CCNCNTTCAATAAAATGC-AAAAAAAAAACGGTGGGGAGCTCAGCAATGGCGGCGAAGCG
JMSF048L23+           CCNCNTTCAATAAAATGC-AAAAAAAAAACGGTGGGGAGCTCAGCAATGGCGGCGAAGCG
JMSF004I04+                              AAAAAAAAANCGGTGGGGAGCTCAGCAATGGCGGCGAAGCG
                      ____________________________________________________________
consensus             CCNCCTTCAATAAAATGC-AAAAAAAAAACGGTGGGGAGCTCAGCAATGGCGGCGAAGCG
 
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JMSF049M08+           GGAAGAAGGAGAAGAAGGAAAGGGACTAATGAGATTTGGAGAGGGGTAGCTGTGGGTTTT
JMFF019A23+           GGAAGAAGGAGAAGAAGGAAAGGGACTAATGAGATTTGGAGAGGGGTAGCTGTGGGTTTT
JMSF030F05+           GGAAGAAGGAGAAGAAGGAAAGGGACTAATGAGATTTGGAGAGGGGTAGCTGTGGGTTTT
JMSF011A24+           GGAAGAAGGAGAAGAAGGAAAGGGACTAATGAGATTTGGAGAGGGGTAGCTGTGGGTTTT
JMSF044F20+           GGAAGAAGGAGAAGAAGGAAAGGGACTAATGAGATTTGGAGAGGGGTAGCTGTGGGTTTT
JMSF048L23+           GGAAGAAGGAGAAGAAGGAAAGGGACTAATGAGATTTGGAGAGGGGTAGCTGTGGGTTTT
JMSF004I04+           GGAAGAAGGAGAAGAAGGAAAGGGACTAATGAGATTTGGAGAGGGGTAGCTGTGGGTTTT
                      ____________________________________________________________
consensus             GGAAGAAGGAGAAGAAGGAAAGGGACTAATGAGATTTGGAGAGGGGTAGCTGTGGGTTTT
 
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JMSF049M08+           CTTTACAGGCGGCGAGCTTTTTTGGTATGGCTTTTACCGGATTTGCTGCTGCGTTTTCTT
JMFF019A23+           CTTTACAGGCGGCGAGCTTTTTTGGTATGGCTTTTACCGGATTTGCTGCTGCGTTTTCTT
JMSF030F05+           CTTTACAGGCGGCGAGCTTTTTTGGTATGGCTTTTACCGGATTTGCTGCTGCGTTTTCTT
JMSF011A24+           CTTTACAGGCGGCGAGCTTTTTTGGTATGGCTTTTACCGGATTTGCTGCTGCGTTTTCTT
JMSF044F20+           CTTTACAGGCGGCGAGCTTTTTTGGTATGGCTTTTACCGGATTTGCTGCTGCGTTTTCTT
JMSF048L23+           CTTTACAGGCGGCGAGCTTTTTTGGTATGGCTTTTACCGGATTTGCTGCTGCGTTTTCTT
JMSF004I04+           CTTTACAGGCGGCGAGCTTTTTTGGTATGGCTTTTACCGGATTTGCTGCTGCGTTTTCTT
                      ____________________________________________________________
consensus             CTTTACAGGCGGCGAGCTTTTTTGGTATGGCTTTTACCGGATTTGCTGCTGCGTTTTCTT
 
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JMSF049M08+           TTGGCTGATTTGATGGGGGGTTTTAAGTTTGTGCATAGTGATTTGACTTCACCTCACT  
JMFF019A23+           TTGGCTGATTTGATGGGGGGTTTTAAGTTTGTGCATAGTGATTTGACTTCACCTCACTCT
JMSF030F05+           TTGGCTGATTTGATGGGGGGTTTTAAGTTTGTGCATAGTGATTTGACTTCACCTCACTCT
JMSF011A24+           TTGGCTGATTTGATGGGGGGTTTTAAGTTTGTGCATAGTGATTTGACTTCACCTCACTCT
JMSF044F20+           TTGGCTGATTTGATGGGGGGTTTTAAGTTTGTGCATAGTGATTTGACTTCACCTCACTCT
JMSF048L23+           TTGGCTGATTTGATGGGGGGTTTTAAGTTTGTGCATAGTGATTTGACTTCACCTCACTCT
JMSF004I04+           TTGGCTGATTTGATGGGGGGTTTTAAGTTTGTGCATAGTGATTTGACTTCACCTCACTCT
                      ____________________________________________________________
consensus             TTGGCTGATTTGATGGGGGGTTTTAAGTTTGTGCATAGTGATTTGACTTCACCTCACTCT
 
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JMFF019A23+           ACTTTCAC                                                    
JMSF011A24+           ACTCTCACTTC                                                 
JMSF044F20+           ACTCTCACTTCTGTTTCCTTCTTTCTTTTGTCTCTCCATATTCCTCTTTCAAACTC    
JMSF048L23+           ACTCTCACTTCTGTTTCCTTCTTTCTTTTGTCTCTCCATATTCCTCTTTCAAACTC    
JMSF004I04+           ACTCTCACTTCTGTATCCTTCTTTCTTTTGTCTCTCCATATTCCTCTTTCAAACTCCCTC
                      ____________________________________________________________
consensus             ACTCTCACTTCTGTTTCCTTCTTTCTTTTGTCTCTCCATATTCCTCTTTCAAACTCCCTC