Contig 002055:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003A13Sequence239002055 (4)dbj|BAA11310.1|2e-14chlorophyl a/b binding protein [Ipomoea nil]758009894 (15)ref|XP_008456347.1|3e-169PREDICTED: chlorophyll a-b binding protein of LHCII type 1 [Cucumis melo]
JMSF003O11Sequence180002055 (4)739009894 (15)ref|XP_004145734.1|4e-167PREDICTED: chlorophyll a-b binding protein, chloroplastic-like [Cucumis sativus
JMSF006P01Sequence307002055 (4)ref|XP_011096521.1|1e-29PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like [Sesamum indi426009894 (15)ref|WP_039311891.1|1e-48hypothetical protein, partial [Paenibacillus sp. IHB B 3415] gb|KHL91104.1| hypo
JMSF025F13Sequence679002055 (4)ref|XP_011096521.1|1e-125PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like [Sesamum indi760009894 (15)gb|AFW81158.1|1e-137light harvesting chlorophyll a/b binding protein3 [Zea mays]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF025F13+ GTCGAAGCTGCCACCGGGGTAGAG
                      ____________________________________________________________
consensus GTCGAAGCTGCCACCGGGGTAGAG
 
. : . : . : . : . : . :
JMSF025F13+ TGGGTCGGTGATCTCTCCGAGGGGTCCGCCGGCAATACGGTAACCCTCAACGGCTCCCAT
                      ____________________________________________________________
consensus TGGGTCGGTGATCTCTCCGAGGGGTCCGCCGGCAATACGGTAACCCTCAACGGCTCCCAT
 
. : . : . : . : . : . :
JMSF025F13+ CAACACAACTTGGCATGCCCAGATGGCCAAGATGCTCTGTGCGTGGATCAAGCTTGGGTT
                      ____________________________________________________________
consensus CAACACAACTTGGCATGCCCAGATGGCCAAGATGCTCTGTGCGTGGATCAAGCTTGGGTT
 
. : . : . : . : . : . :
JMSF025F13+ GCCCAAGTAGTCAAGACCTCCCTCGCTGAAGATCTGAGCTCCGGCCTTGAACCACACTGC
                      ____________________________________________________________
consensus GCCCAAGTAGTCAAGACCTCCCTCGCTGAAGATCTGAGCTCCGGCCTTGAACCACACTGC
 
. : . : . : . : . : . :
JMSF025F13+ CTCGCCGAACTTCACGCCGTTGCGGGACAACAGCTCCGGGAAAACGCATCCAAGGGCTCC
                      ____________________________________________________________
consensus CTCGCCGAACTTCACGCCGTTGCGGGACAACAGCTCCGGGAAAACGCATCCAAGGGCTCC
 
. : . : . : . : . : . :
JMSF025F13+ CAGCATCGCCCATCTGGAGTGGATCACCTCCAGCTCGCGGTTCTTGGCGAAGGTCTCTGG
                      ____________________________________________________________
consensus CAGCATCGCCCATCTGGAGTGGATCACCTCCAGCTCGCGGTTCTTGGCGAAGGTCTCTGG
 
. : . : . : . : . : . :
JMSF025F13+ GTCAGCAGAGAGGCCAGCAGTGTCCCATCCGTAGTCGCCGGGGAACTCTCCGGTCAGGTA
JMSF006P01+ TCCGGTCAGGTA
                      ____________________________________________________________
consensus GTCAGCAGAGAGGCCAGCAGTGTCCCATCCGTAGTCGCCGGGGAACTCTCCGGTCAGGTA
 
. : . : . : . : . : . :
JMSF025F13+ GCTTGGGGGCTCGCCGGAGAATGGACCCAAGTACTTAACACGGTCTGGGCCGTACCATGG
JMSF006P01+ GCTTGGGGGCTCGCCGGAGAATGGACCCAAGTACTTAACACGGTCTGGGCCGTACCATGG
                      ____________________________________________________________
consensus GCTTGGGGGCTCGCCGGAGAATGGACCCAAGTACTTAACACGGTCTGGGCCGTACCATGG
 
. : . : . : . : . : . :
JMSF025F13+ GCTGCCGGATGAAACAGGCTTCGGCTTACCAGCGGTCTTCCTCATGGTAAACTTGGCGTT
JMSF006P01+ GCTGCCGGATGAAACAGGCTTCGGCTTACCAGCGGTCTTCCTCATGGTAAACTTGGCGTT
JMSF003A13+ CTGCCGGATGAAACAGGCTTCGGCTTACCAGCGGTCTTCCTCATGGTAAACTTGGCGTT
                      ____________________________________________________________
consensus GCTGCCGGATGAAACAGGCTTCGGCTTACCAGCGGTCTTCCTCATGGTAAACTTGGCGTT
 
. : . : . : . : . : . :
JMSF025F13+ TCCGGTGATTTCCGGTGTGGAGGGCGAGAGCTTCACTGCCTTTCCGGCGAAACTAGGGGA
JMSF006P01+ TCCGGTGATTTCCGGTGTGGAGGGCGAGAGCTTCACTGCCTTTCCGGCGAAACTAGGGGA
JMSF003O11+ TCCGGTGATTTCCGGTGTGGAGGGCGAGAGCTTCACTGCCTTTCCGGCGAAACTAGGGGA
JMSF003A13+ TCCGGTGATTTCCGGTGTGGAGGGCGAGAGCTTCACTGCCTTTCCGGCGAAACTAGGGGA
                      ____________________________________________________________
consensus TCCGGTGATTTCCGGTGTGGAGGGCGAGAGCTTCACTGCCTTTCCGGCGAAACTAGGGGA
 
. : . : . : . : . : . :
JMSF025F13+ AGAGAGAGCCATTGTAGCTGCTGCCATTGTACTTCTTTATAAGTGAAATGCAAAGACAAA
JMSF006P01+ AGAGAGAGCCATTGTAGCTGCTGCCATTGTACTTCTTTATAAGTGAAATGCAAAGACAAA
JMSF003O11+ AGAGAGAGCCATTGTAGCTGCTGCCATTGTACTTCTTTATAAGTGAAATGCAAAGACAAA
JMSF003A13+ AGAGAGAGCCATTGTAGCTGCTGCCATTGTACTTCTTTATAAGTGAAATGCAAAGACAAA
                      ____________________________________________________________
consensus AGAGAGAGCCATTGTAGCTGCTGCCATTGTACTTCTTTATAAGTGAAATGCAAAGACAAA
 
. : . : . : . : . : . :
JMSF025F13+ TGAAGCTAAAGAAGGTGGTAACTACAAGAAGTGTGAATAGCTCCTTTAATTTGT
JMSF006P01+ TGAAGCTAAAGAAGGTGGTAACTACAAGAAGTGTGAATAGCTCCTTTAATTTGT
JMSF003O11+ TGAAGCTAAAGAAGGTGGTAACTACAAGAAGTGTGAATAGCTCCTTTAATTTGT
JMSF003A13+ TGAAGCTAAAGAAGGTGGTAACTACAAGAAGTGTGAATAGCTCCTTTAATTTGTGGCTTC
                      ____________________________________________________________
consensus TGAAGCTAAAGAAGGTGGTAACTACAAGAAGTGTGAATAGCTCCTTTAATTTGTGGCTTC