| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001H17 | Sequence | 516 | 002033 (7) | 671 | 005520 (6) | ref|XP_009630870.1| | 6e-76 | PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Nicotiana tomentosiformis | |||
| JMFF017E18 | Sequence | 586 | 002033 (7) | ref|XP_004246663.1| | 2e-08 | PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Solanum lycopersicum] | 666 | 005520 (6) | ref|XP_004246663.1| | 1e-62 | PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Solanum lycopersicum] |
| JMFF023K16 | Sequence | 563 | 002033 (7) | 661 | 005520 (6) | ref|XP_009630870.1| | 5e-70 | PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Nicotiana tomentosiformis | |||
| JMFF045E08 | Sequence | 645 | 002033 (7) | ref|XP_004246663.1| | 7e-11 | PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Solanum lycopersicum] | 643 | 005520 (6) | ref|XP_009630870.1| | 6e-70 | PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Nicotiana tomentosiformis |
| JMSF001A10 | Sequence | 205 | 002033 (7) | ||||||||
| JMSF001I04 | Sequence | 255 | 002033 (7) | 711 | 005520 (6) | ref|XP_009630870.1| | 4e-82 | PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Nicotiana tomentosiformis | |||
| JMSF008G18 | Sequence | 488 | 002033 (7) | 693 | 005520 (6) | ref|XP_009630870.1| | 1e-73 | PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Nicotiana tomentosiformis | |||
This contig is upended
. : . : . : . : . : . :
JMFF017E18+ CGACG
JMFF045E08+ TATAGTCACCGCCTTTGGTGCTCGACG
____________________________________________________________
consensus TATAGTCACCGCCTTTGGTGCTCGACG
. : . : . : . : . : . :
JMFF017E18+ TATGGTGCGGGCTGGGGAATCATGGGCCGGCACGGGTACCGCCCGCTAATCCAATCCGCA
JMFF045E08+ TATGGTGCGGGCTGGGGAATCATGGGCCGGCACGGGTACCGCCCGCTAATCCAATCCGCA
____________________________________________________________
consensus TATGGTGCGGGCTGGGGAATCATGGGCCGGCACGGGTACCGCCCGCTAATCCAATCCGCA
. : . : . : . : . : . :
JMFF017E18+ TGGGACGGGTCCAAGCGGTGTTGGTGATCAAAGGGTAACGGCCGAGAAGGAGGCGGCGGC
JMFF001H17+ CCAAGCGGTGTTGGTGATCAAAGGGTAACGGCCGAGAAGGAGGCGGCGGC
JMFF045E08+ TGGGACGGGTCCAAGCGGTGTTGGTGATCAAAGGGTAACGGCCGAGAAGGAGGCGGCGGC
JMFF023K16+ CCAAGCGGTGTTGGTGATCAAAGGGTAACGGCCGAGAAGGAGGCGGCGGC
____________________________________________________________
consensus TGGGACGGGTCCAAGCGGTGTTGGTGATCAAAGGGTAACGGCCGAGAAGGAGGCGGCGGC
. : . : . : . : . : . :
JMFF017E18+ GGCTGATAGTAGGGCGGGTACTGGTAATACGGCGGCGCGTTAGGGTTGGGGTATTGGGAA
JMFF001H17+ GGCTGATAGTAGGGCGGGTACTGGTAATACGGCGGCGCGTTAGGGTTGGGGTATTGGGAA
JMFF045E08+ GGCTGATAGTAGGGCGGGTACTGGTAATACGGCGGCGCGTTAGGGTTGGGGTATTGGGAA
JMFF023K16+ GGCTGATAGTAGGGCGGGTACTGGTAATACGGCGGCGCGTTAGGGTTGGGGTATTGGGAA
JMSF008G18+ GGTACTGGTAATACGGCGGCGCGTTAGGGTTGGGGTATTGGGAA
____________________________________________________________
consensus GGCTGATAGTAGGGCGGGTACTGGTAATACGGCGGCGCGTTAGGGTTGGGGTATTGGGAA
. : . : . : . : . : . :
JMFF017E18+ GGGTAAGGCGTCGCAGCAGCAAACACGTACTGGTTGGCGCTGATCTCAGGCTGCGGCTGC
JMFF001H17+ GGGTAAGGCGTCGCAGCAGCAAACACGTACTGGTTGGCGCTGATCTCAGGCTGCGGCTGC
JMFF045E08+ GGGTAAGGCGTCGCAGCAGCAAACACGTACTGGTTGGCGCTGATCTCAGGCTGCGGCTGC
JMFF023K16+ GGGTAAGGCGTCGCAGCAGCAAACACGTACTGGTTGGCGCTGATCTCAGGCTGCGGCTGC
JMSF008G18+ GGGTAAGGCGTCGCAGCAGCAAACACGTACTGGTTGGCGCTGATCTCAGGCTGCGGCTGC
____________________________________________________________
consensus GGGTAAGGCGTCGCAGCAGCAAACACGTACTGGTTGGCGCTGATCTCAGGCTGCGGCTGC
. : . : . : . : . : . :
JMFF017E18+ GGCTGAGGCGGTGGCGGTGGAGGCGGCGGCGGGTGCCTCCTCCGACTGCTATTGCTTCTT
JMFF001H17+ GGCTGAGGCGGTGGCGGTGGAGGCGGCGGCGGGTGCCTCCTCCGACTGCTATTGCTTCTT
JMFF045E08+ GGCTGAGGCGGTGGCGGTGGAGGCGGCGGCGGGTGCCTCCTCCGACTGCTATTGCTTCTT
JMFF023K16+ GGCTGAGGCGGTGGCGGTGGAGGCGGCGGCGGGTGCCTCCTCCGACTGCTATTGCTTCTT
JMSF008G18+ GGCTGAGGCGGTGGCGGTGGAGGCGGCGGCGGGTGCCTCCTCCGACTGCTATTGCTTCTT
____________________________________________________________
consensus GGCTGAGGCGGTGGCGGTGGAGGCGGCGGCGGGTGCCTCCTCCGACTGCTATTGCTTCTT
. : . : . : . : . : . :
JMSF001I04+ GACGNTACCCATCTCACAAGCTTCCTCCTTTCTC
JMFF017E18+ CGCCGCCCGTTCACTCCACTGCTTCCGACGTTACCCATCTCACAAGCTTCCTCCTTTCTC
JMFF001H17+ CGCCGCCCGTTCACTCCACTGCTTCCGACGTTACCCATCTCACAAGCTTCCTCCTTTCTC
JMFF045E08+ CGCCGCCCGTTCACTCCACTGCTTCCGACGTTACCCATCTCACAAGCTTCCTCCTTTCTC
JMFF023K16+ CGCCGCCCGTTCACTCCACTGCTTCCGACGTTACCCATCTCACAAGCTTCCTCCTTTCTC
JMSF008G18+ CGCCGCCCGTTCACTCCACTGCTTCCGACGTTACCCATCTCACAAGCTTCCTCCTTTCTC
____________________________________________________________
consensus CGCCGCCCGTTCACTCCACTGCTTCCGACGTTACCCATCTCACAAGCTTCCTCCTTTCTC
. : . : . : . : . : . :
JMSF001I04+ CAGAACCAAATCTATCATCAAAATTCCAAGTAAAGCAAAACCCGAACTAGTATTTCTCAG
JMFF017E18+ CAGAACCAAATCTATCATCAAAATTCCAAGTAAAGCAAAACCCGAACTAGTATTTCTCAG
JMFF001H17+ CAGAACCAAATCTATCATCAAAATTCCAAGTAAAGCAAAACCCGAACTAGTATTTCTCAG
JMFF045E08+ CAGAACCAAATCTATCATCAAAATTCCAAGTAAAGCAAAACCCGAACTAGTATTTCTCAG
JMFF023K16+ CAGAACCAAATCTATCATCAAAATTCCAAGTAAAGCAAAACCCGAACTAGTATTTCTCAG
JMSF008G18+ CAGAACCAAATCTATCATCAAAATTCCAAGTAAAGCAAAACCCGAACTAGTATTTCTCAG
____________________________________________________________
consensus CAGAACCAAATCTATCATCAAAATTCCAAGTAAAGCAAAACCCGAACTAGTATTTCTCAG
. : . : . : . : . : . :
JMSF001I04+ GAATTCAGAGCCGGGAGTCACAAAATTCCTGCTTTTTCCCCGATCCGAAAGGAAACGATA
JMFF017E18+ GAATTCAGAGCCGGGAGTCACAAAATTCCTGCTTTTTCCCCGATCCGAAAGGAAACGATA
JMFF001H17+ GAATTCAGAGCCGGGAGTCACAAAATTCCTGCTTTTTCCCCGATCCGAAAGGAAACGATA
JMFF045E08+ GAATTCAGAGCCGGGAGTCACAAAATTCCTGCTTTTTCCCCGATCCGAAAGGAAACGATA
JMFF023K16+ GAATTCAGAGCCGGGAGTCACAAAATTCCTGCTTTTTCCCCGATCCGAAAGGAAACGATA
JMSF008G18+ GAATTCAGAGCCGGGAGTCACAAAATTCCTGCTTTTTCCCCGATCCGAAAGGAAACGATA
____________________________________________________________
consensus GAATTCAGAGCCGGGAGTCACAAAATTCCTGCTTTTTCCCCGATCCGAAAGGAAACGATA
. : . : . : . : . : . :
JMSF001I04+ TGTTATAGCTCAAGATAGGAACATCCTGAGTTAGGTTCTGAGAGAGAGAAAATTGAGGGT
JMFF017E18+ TGTTATAGCTCAAGATAGGAACATCCTGAGTTAGGTTCTGAGAGAGAGAAAATTGAGGGT
JMFF001H17+ TGTTATAGCTCAAGATAGGAACATCCTGAGTTAGGTTCTGAGAGAGAGAAAATTGAGGGT
JMFF045E08+ TGTTATAGCTCAAGATAGGAACATCCTGAGTTAGGTTCTGAGAGAGAGAAAATTGAGGGT
JMFF023K16+ TGTTATAGCTCAAGATAGGAACATCCTGAGTTAGGTTCTGAGAGAGAGAAAATTGAGGGT
JMSF008G18+ TGTTATAGCTCAAGATAGGAACATCCTGAGTTAGGTTCTGAGAGAGAGAAAATTGAGGGT
JMSF001A10+ TTCTGAGAGAGAGAAAATTGAGGGT
____________________________________________________________
consensus TGTTATAGCTCAAGATAGGAACATCCTGAGTTAGGTTCTGAGAGAGAGAAAATTGAGGGT
. : . : . : . : . : . :
JMSF001I04+ AGGTTCACATCCAATTATTGATGGTGGTAGAGAAT
JMFF017E18+ AGGTTCACATCCAATTATTGATGGTGGTAGAGAATAGGAT
JMFF001H17+ AGGTTCACATCCAATTATTGATGGT
JMFF045E08+ AGGTTCACATCCAATTATTGATGGTGGTAGAGAATAGGATGGAACAAGAAAGCTACGGTG
JMFF023K16+ AGGTTCACATCCAATTATTGATGGTGGTAGAGAATAGGATGGAACAAGAAAGCTACGGTG
JMSF008G18+ AGGTTCACATCCAATTATTGATGGTGGTAGAGAATAGGATGGAACAAGAAAGCTACGGTG
JMSF001A10+ AGGTTCACATCCAATTATTGATGGTGGTAGAGAATAGGATGGAACAAGAAAGCTACGGTG
____________________________________________________________
consensus AGGTTCACATCCAATTATTGATGGTGGTAGAGAATAGGATGGAACAAGAAAGCTACGGTG
. : . : . : . : . : . :
JMFF045E08+ AAGAAGAAGAAGAAGAA
JMFF023K16+ AAGAAGAAGAAGAAGAA
JMSF008G18+ AAGAAGAAGAAGAAGAA
JMSF001A10+ AAGAAGAAGAAGAAGAACGGGGGTTGCGTAAAGTTGCATACAGAACGAATAACATTAATG
____________________________________________________________
consensus AAGAAGAAGAAGAAGAACGGGGGTTGCGTAAAGTTGCATACAGAACGAATAACATTAATG
. : . : . : . : . : . :
JMSF001A10+ AATCGGAGGGAAAAATTGGGTACAGCTGAGATGAGCTGCTTTGCTTTTGCAGTTCATGCC
____________________________________________________________
consensus AATCGGAGGGAAAAATTGGGTACAGCTGAGATGAGCTGCTTTGCTTTTGCAGTTCATGCC