Contig 002021:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052H17+                            CGGAAGATACAAGTGAAGAAGTCACTACCGTATTAAACCGGTG
                      ____________________________________________________________
consensus                              CGGAAGATACAAGTGAAGAAGTCACTACCGTATTAAACCGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052H17+           CAGTGTGCTTGTTTTGCATTCAATTGGTAGGAATGTATTTGTATCAGATGTTAGCTGCAA
                      ____________________________________________________________
consensus             CAGTGTGCTTGTTTTGCATTCAATTGGTAGGAATGTATTTGTATCAGATGTTAGCTGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052H17+           CAGAGCCTCCGGGGAAATATTTTTTGAATTTCTCAATGCTGTTGAGTTTGAAGCAAGCAG
                      ____________________________________________________________
consensus             CAGAGCCTCCGGGGAAATATTTTTTGAATTTCTCAATGCTGTTGAGTTTGAAGCAAGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052H17+           CCGCAAATGCTGGATAAATGACTCCCAGTGAGCAGGCATGTTCACGCGCACCAAGTAAAG
                      ____________________________________________________________
consensus             CCGCAAATGCTGGATAAATGACTCCCAGTGAGCAGGCATGTTCACGCGCACCAAGTAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052H17+           GATCCTGGAAGTCACTTTGTTCCGGAAAAATTCACCAAGTATTTCAGTAGCCAGTATGGT
                      ____________________________________________________________
consensus             GATCCTGGAAGTCACTTTGTTCCGGAAAAATTCACCAAGTATTTCAGTAGCCAGTATGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052H17+           ATTCTTTTTAAACAATAACTCATGTTGTTCTGCCTTCTTCCCGTCAAAAGTATCCCGGTT
                      ____________________________________________________________
consensus             ATTCTTTTTAAACAATAACTCATGTTGTTCTGCCTTCTTCCCGTCAAAAGTATCCCGGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052H17+           GTCTATTTCCATGTCTTGTGTCCTGATTGGCCACCTAGATTCCTTTTCAGTGGTGAGTTC
                      ____________________________________________________________
consensus             GTCTATTTCCATGTCTTGTGTCCTGATTGGCCACCTAGATTCCTTTTCAGTGGTGAGTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF019O18+                       ATCATCAAGTGATGCATCAACTAACCCCCACACACTCGCAAAAACAAA
JMSF052H17+           CAGCAATCCCTCATCATCAAGTGATGCATCAACTAACCCCCACACACTCGCAAAAACAAA
JMFS155D05+                                                   CACACACTCGCAAAAACAAA
                      ____________________________________________________________
consensus             CAGCAATCCCTCATCATCAAGTGATGCATCAACTAACCCCCACACACTCGCAAAAACAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF019O18+           TTCCACCATTAGCAACCCAGCTTCACATTCTGGAATCCCGAAAATCTCTGAAAGATTAAG
JMSF052H17+           TTCCACCATTAGCAACCCAGCTTCACATTCTGGAATCCCGAAAATCTCTGAAAGATTAAG
JMFS122H02+                        AACCCAGCTTCACATTCTGGAATCCCGANAATCTCTGAAAGATTAAG
JMFS155D05+           TTCCACCATTAGCAACCCAGCTTCACATTCTGGAATCCCGAAAATCTCTGAAAGATTAAG
                      ____________________________________________________________
consensus             TTCCACCATTAGCAACCCAGCTTCACATTCTGGAATCCCGAAAATCTCTGAAAGATTAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF019O18+           AGTCTCGTTGATGGATGCCATAATCTTTTGATGATTTGGGCCATTAATCATAGATGTCAA
JMSF052H17+           AGTCTCGTTGATGGATGCCATAATCTTTTGATGATTTGGGCCATTAATCATAGATGTCAA
JMFS122H02+           AGTCTCGTTGATGGATGCCATAATCTTTTGATGATTTGGGCCATTAATCATAGATGTCAA
JMFS155D05+           AGTCTCGTTGATGGATGCCATAATCTTTTGATGATTTGGGCCATTAATCATAGATGTCAA
                      ____________________________________________________________
consensus             AGTCTCGTTGATGGATGCCATAATCTTTTGATGATTTGGGCCATTAATCATAGATGTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF019O18+           TGAAAAGACATATCTTTTCAGAAGTTCCATATACAGTCTATAGGCCACTGGATAGCTCCT
JMSF052H17+           TGAAAAGACATATCTTTTCAGAAGTTCCATATACAGTCTATAGGCCACTGGATAGCTCCT
JMFS122H02+           TGAAAAGACATATCTTTTCAGAAGTTCCATATACAGTCTATAGGCCACTGGATAGCTCCT
JMFS155D05+           TGAAAAGACATATCTTTTCAGAAGTTCCATATACAGTCTATAGGCCACTGGATAGCTCCT
                      ____________________________________________________________
consensus             TGAAAAGACATATCTTTTCAGAAGTTCCATATACAGTCTATAGGCCACTGGATAGCTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF019O18+           TCTGTTAGGAATCACTCTGGAAGAGAGAAGAGCGAGAACGTAGAGCGGAGGCACAACCCT
JMSF052H17+           TCTGTTAGGAATCACTCTGGAAGAGAGAAGAGCGAGAACGTAGAGCGGAGGCACAACCCT
JMFS122H02+           TCTGTTAGGAATCACTCTGGAAGAGAGAAGAGCGAGAACGTAGAGCGGAGGCACAACCCT
JMFS155D05+           TCTGTTAGGAATCACTCTGGAAGAGAGAAGAGCGAGAACGTAGAGCGGAGGCACAACCCT
                      ____________________________________________________________
consensus             TCTGTTAGGAATCACTCTGGAAGAGAGAAGAGCGAGAACGTAGAGCGGAGGCACAACCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF019O18+           GATAGTCAAGGCTTT                                             
JMSF052H17+           GATAGTCAAGGCTTT                                             
JMFS122H02+           GATAGTCAAGGCTTTCTCGAGGAACTTCCAAGTAATAGGAACGTTATTGGCCCAGCAGAT
JMFS155D05+           GATAGTCAAGGCTTTCTCGAGGAACTTCCAAGTAATAGGAACGTTATTGGCCCAGCAGAT
                      ____________________________________________________________
consensus             GATAGTCAAGGCTTTCTCGAGGAACTTCCAAGTAATAGGAACGTTATTGGCCCAGCAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS122H02+           GTGGGAGACGAGGAGGGCGGCGACGTCGGTGGAGGGCACGGCAACGCCGGCGGCGTTGAG
JMFS155D05+           GTGGGAGACGAGGAGGGCGGCGACGTCGGTGGAGGGCACGGCAACGCCGGCGGCGTTGAG
                      ____________________________________________________________
consensus             GTGGGAGACGAGGAGGGCGGCGACGTCGGTGGAGGGCACGGCAACGCCGGCGGCGTTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS122H02+           TGTGGAGGAGAGCTGCATGGCGTACACCAAGGGGTCAGTGCCCCTGTCCTGAGCCAGCTT
JMFS155D05+           TGTGGAGGAGAGCTGCATGGCGTACACCAAGGGGTCAGTGCCCCTGTCCTGAGCCAGCTT
                      ____________________________________________________________
consensus             TGTGGAGGAGAGCTGCATGGCGTACACCAAGGGGTCAGTGCCCCTGTCCTGAGCCAGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS122H02+           AGTGAGCTCCATCGCAGTATCCCACCAGTGGCTGGGCTGTACGGACACCACCGCCATGGT
JMFS155D05+           AGTGAGCTCCATCGCAGTATCCCACCAGTGGCTGGGCTGTACGGACACCACCGCCATGGT
                      ____________________________________________________________
consensus             AGTGAGCTCCATCGCAGTATCCCACCAGTGGCTGGGCTGTACGGACACCACCGCCATGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS122H02+           TTGAACTCAATTTTGTTTCCTAGGGTTAGAGCAGATCTATAGGTAAGCTTTCATGCCGAG
JMFS155D05+           TTGAACTCAATTTTGTTTCCTAGGGTTAGAGCAGATCTATAGGTAAGCTTTCATGCCGAG
                      ____________________________________________________________
consensus             TTGAACTCAATTTTGTTTCCTAGGGTTAGAGCAGATCTATAGGTAAGCTTTCATGCCGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS122H02+           TAACTGCAAATTCTTCGGTTCTTTTTTGAACAAAGAGAATATCGGA              
JMFS155D05+           TAACTGCAAATTCTTCGGTTCTTTTTTGAACAAAGAGAATATCGGAGAGTGACAATGTTG
                      ____________________________________________________________
consensus             TAACTGCAAATTCTTCGGTTCTTTTTTGAACAAAGAGAATATCGGAGAGTGACAATGTTG