Contig 002019:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014F15Sequence601011505 (4)ref|XP_009606232.1|2e-21PREDICTED: pre-mRNA-processing protein 40A isoform X3 [Nicotiana tomentosiformi751002019 (3)ref|XP_010323429.1|5e-07PREDICTED: pre-mRNA-processing protein 40A [Solanum lycopersicum]
JMFS153E11Sequence251002019 (3)
JMSF034G07Sequence638022169ref|XP_006343433.1|4e-77PREDICTED: pre-mRNA-processing protein 40A-like isoform X1 [Solanum tuberosum]745002019 (3)ref|XP_009606233.1|2e-95PREDICTED: pre-mRNA-processing protein 40A isoform X4 [Nicotiana tomentosiformi

Alignment

This contig is upended


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rJMSF034G07+                                     AGATGATGAAAGATGCTCGCGCCTTGNAAAAAT
                      ____________________________________________________________
consensus                                        AGATGATGAAAGATGCTCGCGCCTTGNAAAAAT
 
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rJMSF034G07+          TGATCGCTTGGAGGTTTTCCAGGAATATATTCGTGACTTGGAGAAGGAAGAGGAAGAGCA
                      ____________________________________________________________
consensus             TGATCGCTTGGAGGTTTTCCAGGAATATATTCGTGACTTGGAGAAGGAAGAGGAAGAGCA
 
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rJMSF034G07+          ACGGAAAACACAAAAGGAACAATTGAGACGTGCTGAGCGCAAGAACCGTGATGCTTTTCG
                      ____________________________________________________________
consensus             ACGGAAAACACAAAAGGAACAATTGAGACGTGCTGAGCGCAAGAACCGTGATGCTTTTCG
 
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rJMSF034G07+          TAATATGATGGAAGACCATATTGCTGCTGGCACAGTCACTGCTAAAACACTATGGCGTGA
                      ____________________________________________________________
consensus             TAATATGATGGAAGACCATATTGCTGCTGGCACAGTCACTGCTAAAACACTATGGCGTGA
 
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rJMSF034G07+          CTATTGTCCAATGGTGAAGGAGTCCGTGGCTTATCAGGCTGTTGCATCCAACACTTCAGG
                      ____________________________________________________________
consensus             CTATTGTCCAATGGTGAAGGAGTCCGTGGCTTATCAGGCTGTTGCATCCAACACTTCAGG
 
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rJMSF034G07+          TTCTACACCAAAGGATTTGTTTGAAGATGTTGTGGAAGAGTTGGAAAATCAGTATCATGA
                      ____________________________________________________________
consensus             TTCTACACCAAAGGATTTGTTTGAAGATGTTGTGGAAGAGTTGGAAAATCAGTATCATGA
 
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rJMSF034G07+          AGACAAAACACGTGTTAAAAATGTCTTGAAGTCAGAAAAGATAACATTCTCACCATTATG
                      ____________________________________________________________
consensus             AGACAAAACACGTGTTAAAAATGTCTTGAAGTCAGAAAAGATAACATTCTCACCATTATG
 
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rJMSF034G07+          GTCATTTGAGGACTTTAAAGCTGCTATTCTGGAAACCATTGGTACCCCATCCATTTCTGA
                      ____________________________________________________________
consensus             GTCATTTGAGGACTTTAAAGCTGCTATTCTGGAAACCATTGGTACCCCATCCATTTCTGA
 
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rJMSF034G07+          GGTTAATTTGCAGCTCATTTTTGAGGACCTCATGGAGAGAGCCAAGGATAAGGAGGAGAA
                      ____________________________________________________________
consensus             GGTTAATTTGCAGCTCATTTTTGAGGACCTCATGGAGAGAGCCAAGGATAAGGAGGAGAA
 
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rJMSF034G07+          AGAAGCTAAAAAGCGTCAACGGCTTGCAAAAGATTTTGTTGAGATGCTGAGCAATGCTGA
                      ____________________________________________________________
consensus             AGAAGCTAAAAAGCGTCAACGGCTTGCAAAAGATTTTGTTGAGATGCTGAGCAATGCTGA
 
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rJMSF034G07+          TGAAATAACTGCTGCTTCTAGTTGGGAGGAATGCAAAGAGCTTGTGGAGGATAGCTCAGA
rJMFF014F15+                                      GAATGCAAAGAGCTTGTGGAGGATAGCTCAGA
                      ____________________________________________________________
consensus             TGAAATAACTGCTGCTTCTAGTTGGGAGGAATGCAAAGAGCTTGTGGAGGATAGCTCAGA
 
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rJMSF034G07+          ATACAAAGCTATTGGAGAAGAGACAACCTTGAGGGAAATCTTTGAGGAATATGTTACTCG
rJMFF014F15+          ATCCAAAGCTATTGGAGAAGAGACAACCTTGAGGGAAATCTTTGAGGAATATGTTACTCG
                      ____________________________________________________________
consensus             ATCCAAAGCTATTGGAGAAGAGACAACCTTGAGGGAAATCTTTGAGGAATATGTTACTCG
 
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rJMSF034G07+          CTTGCAGGAGAAGGCAAAAGAAAAGGAACGCAGACGAGAGGAGGAAAAGGCT        
rJMFF014F15+          CTTGCAGGAGAAGGCAAAAGAAAAGGAACGCAGACGAGAGGAGGAAAAGGCTAAAAAGGA
                      ____________________________________________________________
consensus             CTTGCAGGAGAAGGCAAAAGAAAAGGAACGCAGACGAGAGGAGGAAAAGGCTAAAAAGGA
 
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rJMFF014F15+          TAAGGAAAAAGAGGAGAAAGAAAAGAGAAAAGATAAAGAGAGAAAAGAGAAGGACAAGGA
                      ____________________________________________________________
consensus             TAAGGAAAAAGAGGAGAAAGAAAAGAGAAAAGATAAAGAGAGAAAAGAGAAGGACAAGGA
 
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rJMFF014F15+          GAAGGAAGAGCAGCGTGAGAGAGAAAAGGAGAAGGGAAAAGAACGTTCGAGAAAGGATGA
                      ____________________________________________________________
consensus             GAAGGAAGAGCAGCGTGAGAGAGAAAAGGAGAAGGGAAAAGAACGTTCGAGAAAGGATGA
 
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rJMFF014F15+          TGCTGATAGTGAGAGTGTAGATTTCGTTGAATATGAACACAAAGAAGATAAAAAGAGGGA
                      ____________________________________________________________
consensus             TGCTGATAGTGAGAGTGTAGATTTCGTTGAATATGAACACAAAGAAGATAAAAAGAGGGA
 
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rJMFF014F15+          TAAGGACAAAGATAGGAAACATCGGAAACGGCATCATAGCTCTACTGATGATGTGACTTC
                      ____________________________________________________________
consensus             TAAGGACAAAGATAGGAAACATCGGAAACGGCATCATAGCTCTACTGATGATGTGACTTC
 
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rJMFF014F15+          TGATAAGGATGAGAAAGAGGAAACTAAGAAGTCCCGTCGACATAGTGGTGAACGGAAGAA
                      ____________________________________________________________
consensus             TGATAAGGATGAGAAAGAGGAAACTAAGAAGTCCCGTCGACATAGTGGTGAACGGAAGAA
 
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rJMFF014F15+          GTCAAAGAAGCATGCACATTCACCTGAATCAGACGGTGAAAGTCGACGCAAGAGACACAA
                      ____________________________________________________________
consensus             GTCAAAGAAGCATGCACATTCACCTGAATCAGACGGTGAAAGTCGACGCAAGAGACACAA
 
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rJMFF014F15+          AAAAGAACGCGATGCATCTCGTCGTAGTGGTGGATACGAAGAGCTGGAAGATGGTGAACT
JMFS153E11-                                                            GATGGTGAACT
                      ____________________________________________________________
consensus             AAAAGAACGCGATGCATCTCGTCGTAGTGGTGGATACGAAGAGCTGGAAGATGGTGAACT
 
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rJMFF014F15+          CGGTGAGGATGGTGAAATTCAGTAGTGCTTTTTGTTTTGTGCATTAGTGCTTTCTTACTA
JMFS153E11-           CGGTGAGGATGGTGAAATTCAGTAGTGCTTTTTGTTTTGTGCATTAGTGCTTTCTTACTA
                      ____________________________________________________________
consensus             CGGTGAGGATGGTGAAATTCAGTAGTGCTTTTTGTTTTGTGCATTAGTGCTTTCTTACTA
 
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rJMFF014F15+          GAACTCTTCATAGCCTAGTACACTATTTTACTGCAAGATTTTGTCTATGATTTTTTAGTC
JMFS153E11-           GAACTCTTCATAGCCTAGTACACTATTTTACTGCAAGATTTTGTCTATGATTTTTTAGTC
                      ____________________________________________________________
consensus             GAACTCTTCATAGCCTAGTACACTATTTTACTGCAAGATTTTGTCTATGATTTTTTAGTC
 
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rJMFF014F15+          GCATCTAACAACACTATGATGTAACCTGTGTCGGTACCGAGTAGTGTTTTGTTATACAC 
JMFS153E11-           GCATCTAACAACACTATGATGTAACCTGTGTCGGTACCGAGTAGTGTTTTGTTATACACT
                      ____________________________________________________________
consensus             GCATCTAACAACACTATGATGTAACCTGTGTCGGTACCGAGTAGTGTTTTGTTATACACT
 
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JMFS153E11-           GGTGTAGATTGCCGCTGCAAATGCTATTTTCATCATGAAAAAGATGAGCTGTTACTATAC
                      ____________________________________________________________
consensus             GGTGTAGATTGCCGCTGCAAATGCTATTTTCATCATGAAAAAGATGAGCTGTTACTATAC