| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005E13 | Sequence | 487 | 001995 (3) | ref|XP_009592826.1| | 1e-33 | PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X3 [Nicot | 500 | 005395 (2) | ref|XP_006365191.1| | 6e-13 | PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X1 [Solan |
| JMFF017P13 | Sequence | 580 | 001995 (3) | ref|XP_009592826.1| | 2e-33 | PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X3 [Nicot | 744 | 005395 (2) | ref|XP_010313262.1| | 3e-33 | PREDICTED: zinc finger CCCH domain-containing protein 22 isoform X4 [Solanum ly |
| JMFS132F10 | Sequence | 610 | 001995 (3) | ref|XP_009592826.1| | 2e-32 | PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X3 [Nicot | |||||
This contig is upended
. : . : . : . : . : . :
JMFF017P13+ TCGGCGG
____________________________________________________________
consensus TCGGCGG
. : . : . : . : . : . :
JMFF017P13+ CGTCCCCATTGTAGAACCCCGCATGAGAAGGGGAGCTAGAAGACCCAGAGGAAGCGGGGT
____________________________________________________________
consensus CGTCCCCATTGTAGAACCCCGCATGAGAAGGGGAGCTAGAAGACCCAGAGGAAGCGGGGT
. : . : . : . : . : . :
JMFF017P13+ TCGCGGAACCGTTAACCACCGCCGCGTACGAAAGAGGGCTCCTGGGAAAAGCCGGCGAAC
JMFF005E13+ TACGAAAGAGGGCTCCTGGGAAAAGCCGGCGAAC
JMFS132F10+ GCCGGCGAAC
____________________________________________________________
consensus TCGCGGAACCGTTAACCACCGCCGCGTACGAAAGAGGGCTCCTGGGAAAAGCCGGCGAAC
. : . : . : . : . : . :
JMFF017P13+ CGGCCGACCAAAGCGAGGACGGAGAAGACGACGGAAACCCATTGTTGGGAATCGTGATCC
JMFF005E13+ CGGCCGACCAAAGCGAGGACGGAGAAGACGACGGAAACCCATTGTTGGGAATCGTGATCC
JMFS132F10+ CGGCCGACCAAAGCGAGGACGGAGAAGACGACGGAAACCCATTGTTGGGAATCGTGATCC
____________________________________________________________
consensus CGGCCGACCAAAGCGAGGACGGAGAAGACGACGGAAACCCATTGTTGGGAATCGTGATCC
. : . : . : . : . : . :
JMFF017P13+ TGGGCGAAGTCTGGGGAAAAGGACCAAACTTAGTGGGACTGTAAGGCGAGGGAGAAGAAG
JMFF005E13+ TGGGCGAAGTCTGGGGAAAAGGACCAAACTTAGTGGGACTGTAAGGCGAGGGAGAAGAAG
JMFS132F10+ TGGGCGAAGTCTGGGGAAAAGGACCAAACTTAGTGGGACTGTAAGGCGAGGGAGAAGAAG
____________________________________________________________
consensus TGGGCGAAGTCTGGGGAAAAGGACCAAACTTAGTGGGACTGTAAGGCGAGGGAGAAGAAG
. : . : . : . : . : . :
JMFF017P13+ GCGTAGAATGCGAAGAACACGAAGAGTTAGAAGACAGTCCCAGACAATCTTTAGCTTGAT
JMFF005E13+ GCGTAGAATGCGAAGAACACGAAGAGTTAGAAGACAGTCCCAGACAATCTTTAGCTTGAT
JMFS132F10+ GCGTAGAATGCGAAGAACACGAAGAGTTAGAAGACAGTCCCAGACAATCTTTAGCTTGAT
____________________________________________________________
consensus GCGTAGAATGCGAAGAACACGAAGAGTTAGAAGACAGTCCCAGACAATCTTTAGCTTGAT
. : . : . : . : . : . :
JMFF017P13+ TGATGAGCGAAAACAGGAAAGCATCGGGGCCATGGGCTAATCTTATCATCTCCTCATCCC
JMFF005E13+ TGATGAGCGAAAACAGGAAAGCATCGGGGCCATGGGCTAATCTTATCATCTCCTCATCCC
JMFS132F10+ TGATGAGCGAAAACAGGAAAGCATCGGGGCCATGGGCTAATCTTATCATCTCCTCATCCC
____________________________________________________________
consensus TGATGAGCGAAAACAGGAAAGCATCGGGGCCATGGGCTAATCTTATCATCTCCTCATCCC
. : . : . : . : . : . :
JMFF017P13+ CCTGGTCTTGAATCAGTATATAACCCATGATTTTTGAAGCGTTTTCTGGATCCAAGCTTT
JMFF005E13+ CCTGGTCTTGAATCAGTATATAACCCATGATTTTTGAAGCGTTTTCTGGATCCAAGCTTT
JMFS132F10+ CCTGGTCTTGAATCAGTATATAACCCATGATTTTTGAAGCGTTTTCTGGATCCAAGCTTT
____________________________________________________________
consensus CCTGGTCTTGAATCAGTATATAACCCATGATTTTTGAAGCGTTTTCTGGATCCAAGCTTT
. : . : . : . : . : . :
JMFF017P13+ GAATCCTGGAGAACACTATCTTAGTAGCCTCGTAAGTATCCATAGCTGTGAGTGGAGAGT
JMFF005E13+ GAATCCTGGAGAACACTATCTTAGTAGCCTCGTAAGTATCCATAGCTGTGAGTGGAGAGT
JMFS132F10+ GAATCCTGGAGAACACTATCTTAGTAGCCTCGTAAGTATCCATAGCTGTGAGTGGAGAGT
____________________________________________________________
consensus GAATCCTGGAGAACACTATCTTAGTAGCCTCGTAAGTATCCATAGCTGTGAGTGGAGAGT
. : . : . : . : . : . :
JMFF017P13+ GAGAGTGAGAAGGAAAGGAGTAGTCTACTCCTGAGTATATAGTAGAGTAGAGATAGTGAG
JMFF005E13+ GAGAGTGAGAAGGAAAGGAGTAGTCTACTCCTGAGTATATAGTAGAGTAGAGATAGTGAG
JMFS132F10+ GAGAGTGAGAAGGAAAGGAGTAGTCTACTCCTGAGTATATAGTAGAGTAGAGATAGTGAG
____________________________________________________________
consensus GAGAGTGAGAAGGAAAGGAGTAGTCTACTCCTGAGTATATAGTAGAGTAGAGATAGTGAG
. : . : . : . : . : . :
JMFF017P13+ AGAAAGTATCTCTTGGATTTCTCTCGTTTATGT
JMFF005E13+ AGAAAGTATCTCTTGGATTTCTCTCGTTTATGT
JMFS132F10+ AGAAAGTATCTCTTGGATTTCTCTCGTTTATGTATGTAATGTTTGATTGATGTTTTTTTT
____________________________________________________________
consensus AGAAAGTATCTCTTGGATTTCTCTCGTTTATGTATGTAATGTTTGATTGATGTTTTTTTT
. : . : . : . : . : . :
JMFS132F10+ CTAGACAGAGAAACGATAGAGATAGAAGATAGAGATAGAGAGAGAGAAAATAAGGGCGGA
____________________________________________________________
consensus CTAGACAGAGAAACGATAGAGATAGAAGATAGAGATAGAGAGAGAGAAAATAAGGGCGGA
. : . : . : . : . : . :
JMFS132F10+ GTTCCGGAGAGGTCAGTTTCATCGACCGGGTAAAGGATGCTCCGTTAAATTACCAATCTC
____________________________________________________________
consensus GTTCCGGAGAGGTCAGTTTCATCGACCGGGTAAAGGATGCTCCGTTAAATTACCAATCTC