Contig 001982:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS119H11Sequence627001982 (4)ref|XP_010108000.1|3e-40Chloride channel protein CLC-d [Morus notabilis] gb|EXC17565.1| Chloride channel
JMFS120H01Sequence618001982 (4)ref|XP_010108000.1|6e-38Chloride channel protein CLC-d [Morus notabilis] gb|EXC17565.1| Chloride channel
JMFS127B03Sequence635001982 (4)ref|XP_010108000.1|2e-30Chloride channel protein CLC-d [Morus notabilis] gb|EXC17565.1| Chloride channel
JMFS129F01Sequence611001982 (4)ref|XP_010108000.1|1e-33Chloride channel protein CLC-d [Morus notabilis] gb|EXC17565.1| Chloride channel

Alignment

This contig is upended


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JMFS120H01+                                                           ACCCGGCAAAGT
JMFS119H11+                                                    TATTTCCACCCGGCAAAGT
                      ____________________________________________________________
consensus                                                      TATTTCCACCCGGCAAAGT
 
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JMFS120H01+           TTTTAACAGAGATATTGATGAAAACAGCCGCAAGTCCAGTTCCGATACCAATAAGCAAAG
JMFS119H11+           TTTCAACAGAGATATTGATGAAAACAGCCGCAAGTCCAGTTCCGATACCAATAAGCAAAG
JMFS129F01+                    AGATATTGATGAAAACAGCCGCAAGTCCAGTTCCGATACCAATAAGCAAAG
JMFS127B03+                                    AGCCGCAAGTCCAGTTCCGATACCAATAAGCAAAG
                      ____________________________________________________________
consensus             TTTTAACAGAGATATTGATGAAAACAGCCGCAAGTCCAGTTCCGATACCAATAAGCAAAG
 
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JMFS120H01+           CAAACAACCACTTCACCACAACTGAATACCCCACATAAAGCTTCCCTTTTTTGGCCTGTT
JMFS119H11+           CAAACAACCACTTCACCACAACTGAATACCCCACATAAAGCTTCCCTTTTTTGGCCTGTT
JMFS129F01+           CAAACAACCACTTCACCACAACTGAATACCCCACATAAAGCTTCCCTTTTTTGGCCTGTT
JMFS127B03+           CAAACAACCACTTCACCACAACTGAATACCCCACATAAAGCTTCCCTTTTTTGGCCTGTT
                      ____________________________________________________________
consensus             CAAACAACCACTTCACCACAACTGAATACCCCACATAAAGCTTCCCTTTTTTGGCCTGTT
 
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JMFS120H01+           GTTCTCGATAAGCGTAGTTTTCAATGACTTCATAGTCGAGACTCTCCACAGAGCCGTCGT
JMFS119H11+           GTTCTCGATAAGCGTAGTTTTCAATGACTTCATAGTCGAGACTCTCCACAGAGCCGTCGT
JMFS129F01+           GTTCTCGATAAGCGTAGTTTTCAATGACTTCATAGTCGAGACTCTCCACAGAGCCGTCGT
JMFS127B03+           GTTCTCGATAAGCGTAGTTTTCAATGACTTCATAGTCGAGACTCTCCACAGAGCCGTCGT
                      ____________________________________________________________
consensus             GTTCTCGATAAGCGTAGTTTTCAATGACTTCATAGTCGAGACTCTCCACAGAGCCGTCGT
 
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JMFS120H01+           CCATCTTCTTGGAGGAGACCAACCCTTCGCGCTCTTCCTCCTCTTCTGCCGGCAGCCGCG
JMFS119H11+           CCATCTTCTTGGAGGAGACCAACCCTTCGCGCTCTTCCTCCTCTTCTGCCGGCAGCCGCG
JMFS129F01+           CCATCTTCTTGGAGGAGACCAACCCTTCGCGCTCTTCCTCCTCTTCTGCCGGCAGCCGCG
JMFS127B03+           CCATCTTCTTGGAGGAGACCAACCCTTCGCGCTCTTCCTCCTCTTCTGCCGGCAGCCGCG
                      ____________________________________________________________
consensus             CCATCTTCTTGGAGGAGACCAACCCTTCGCGCTCTTCCTCCTCTTCTGCCGGCAGCCGCG
 
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JMFS120H01+           ACCACATCGTCTTCGCCGTTTCCAGCCCGTTCTGTAAATGATTCGATAACATCTTCCCTT
JMFS119H11+           ACCACATCGTCTTCGCCGTTTCCAGCCCGTTCTGTAAATGATTCGATAACATCTTCCCTT
JMFS129F01+           ACCACATCGTCTTCGCCGTTTCCAGCCCGTTCTGTAAATGATTCGATAACATCTTCCCTT
JMFS127B03+           ACCACATCGTCTTCGCCGTTTCCAGCCCGTTCTGTAAATGATTCGATAACATCTTCCCTT
                      ____________________________________________________________
consensus             ACCACATCGTCTTCGCCGTTTCCAGCCCGTTCTGTAAATGATTCGATAACATCTTCCCTT
 
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JMFS120H01+           CAAATTCCTTCTAATCTATGAAGAACCGAAAACCCCAAAATTCCAAACTCTTTTCACTGC
JMFS119H11+           CAAATTCCTTCTAATCTATGAAGAACCGAAAACCCCAAAATTCCAAACTCTTTTCACTGC
JMFS129F01+           CAAATTCCTTCTAATCTATGAAGAACCGAAAACCCCAAAATTCCAAACTCTTTTCACTGC
JMFS127B03+           CAAATTCCTTCTAATCTATGAAGAACCGAAAACCCCAAAATTCCAAACTCTTTTCACTGC
                      ____________________________________________________________
consensus             CAAATTCCTTCTAATCTATGAAGAACCGAAAACCCCAAAATTCCAAACTCTTTTCACTGC
 
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JMFS120H01+           CAAAGACGCGGAAATTGTAACTTTCTTGGCGTTATTCCAGATAGAATTCGAAAATTTTCC
JMFS119H11+           CAAAGACGCGGAAATTGTAACTTTCTTGGCGTTATTCCAGATAGAATTCGAAAATTTTCC
JMFS129F01+           CAAAGACGCGGAAATTGTAACTTTCTTGGCGTTATTCCAGATAGAATTCGAAAATTTTCC
JMFS127B03+           CAAAGACGCGGAAATTGTAACTTTCTTGGCGTTATTCCAGATAGAATTCGAAAATTTTCC
                      ____________________________________________________________
consensus             CAAAGACGCGGAAATTGTAACTTTCTTGGCGTTATTCCAGATAGAATTCGAAAATTTTCC
 
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JMFS120H01+           GATCAAAACGGAATTTTACCGTTAACAAATTCTCATCAGTGTTTATGTGTATACATATAT
JMFS119H11+           GATCAAAACGGAATTTTACCGTTAACAAATTCTCATCAGTGTTTATGTGTATACATATAT
JMFS129F01+           GATCAAAACGGAATTTTACCGTTAACAAATTCTCATCAGTGTTTATGTGTATACATATAT
JMFS127B03+           GATCAAAACGGAATTTTACCGTTAACAAATTCTCATCAGTGTTTATGTGTATACATATAT
                      ____________________________________________________________
consensus             GATCAAAACGGAATTTTACCGTTAACAAATTCTCATCAGTGTTTATGTGTATACATATAT
 
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JMFS120H01+           GATATGTGGGCTGTGGGTGGAGAATTTGAATTGATTCGATCGGTGAAACAGGATTTCTTT
JMFS119H11+           GATATGTGGGCTGTGGGTGGAGAATTTGAATTGATTCGATCGGTGAAACAGGATTTCTTT
JMFS129F01+           GATATGTGGGCTGTGGGTGGAGAATTTGAATTGATTCGATCGGTGAAACAGGATTTCTTT
JMFS127B03+           GATATGTGGGCTGTGGGTGGAGAATTTGAATTGATTCGATCGGTGAAACAGGATTTCTTT
                      ____________________________________________________________
consensus             GATATGTGGGCTGTGGGTGGAGAATTTGAATTGATTCGATCGGTGAAACAGGATTTCTTT
 
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JMFS120H01+           GATTCGAAGATAAGAGAGAGAAGACTCGGGAAGGCTGGTTGTTGGATGACTCGTTTTTCC
JMFS119H11+           GATTCGAAGATAAGAGAGAGAAGACTCGGGAAGGCTGGTTGTTGGATGACTCGTTTTTCC
JMFS129F01+           GATTCGAAGATAAGAGAGAGAAGACTCGGGAAGGCTGGTTGTTGGATGACTCGTTTTTCC
JMFS127B03+           GATTCGAAGATAAGAGAGAGAAGACTCGGGAAGGCTGGTTGTTGGATGACTCGTTTTTCC
                      ____________________________________________________________
consensus             GATTCGAAGATAAGAGAGAGAAGACTCGGGAAGGCTGGTTGTTGGATGACTCGTTTTTCC
 
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JMFS120H01+           ACTGTC                                                      
JMFS119H11+           ACTGTC                                                      
JMFS129F01+           ACTGTCTCCCTCTCTCAGCG                                        
JMFS127B03+           ACTGTCTCCCTCTCTCAGCGTTGGAAGAGAGCAGTGTGGTTTTCTTTGCAAACTGTGAAC
                      ____________________________________________________________
consensus             ACTGTCTCCCTCTCTCAGCGTTGGAAGAGAGCAGTGTGGTTTTCTTTGCAAACTGTGAAC